Marta E. Alarcón-Riquelme

12 papers Journal 12
YearRankTypeTitle / Venue / Authors
2025 J jnl
Benchmarking single-sample gene set scoring methods for application in precision medicine.
Briefings Bioinform.
Daniel Toro-Domínguez, Chang Wang, Iván Ellson-Lancho, Jordi Martorell-Marugan, Raúl López-Domínguez, Pedro Carmona-Saez, Marta E. Alarcón-Riquelme, Frédéric Baribaud
2025 J jnl
BiomiX, a user-friendly bioinformatic tool for democratized analysis and integration of multiomics data.
BMC Bioinform.
Cristian Iperi, Álvaro Fernández-Ochoa, Guillermo Barturen, Jacques-Olivier Pers, Nathan Foulquier, Eléonore Bettacchioli, Marta E. Alarcón-Riquelme, Divi Cornec, Anne Bordron, Christophe Jamin
2024 J jnl
Pheno-Ranker: a toolkit for comparison of phenotypic data stored in GA4GH standards and beyond.
BMC Bioinform.
Ivo C. Leist, María Rivas-Torrubia, Marta E. Alarcón-Riquelme, Guillermo Barturen, Ivo Glynne Gut, Manuel Rueda
2024 J jnl
Response to the letter 'testing the effectiveness of MyPROSLE in classifying patients with lupus nephritis'.
Briefings Bioinform.
Daniel Toro-Domínguez, Jordi Martorell-Marugan, Manuel Martínez-Bueno, Raúl López-Domínguez, Elena Carnero-Montoro, Guillermo Barturen, Daniel Goldman, Michelle Petri, Pedro Carmona-Saez, Marta E. Alarcón-Riquelme
2023 J jnl
Differential diagnosis of systemic lupus erythematosus and Sjögren's syndrome using machine learning and multi-omics data.
Comput. Biol. Medicine
Jordi Martorell-Marugan, Marco Chierici, Giuseppe Jurman, Marta E. Alarcón-Riquelme, Pedro Carmona-Saez
2022 J jnl
Scoring personalized molecular portraits identify Systemic Lupus Erythematosus subtypes and predict individualized drug responses, symptomatology and disease progression.
Briefings Bioinform.
Daniel Toro-Domínguez, Jordi Martorell-Marugan, Manuel Martínez-Bueno, Raúl López-Domínguez, Elena Carnero-Montoro, Guillermo Barturen, Daniel Goldman, Michelle Petri, Pedro Carmona-Saez, Marta E. Alarcón-Riquelme
2021 J jnl
A comprehensive database for integrated analysis of omics data in autoimmune diseases.
BMC Bioinform.
Jordi Martorell-Marugan, Raúl López-Domínguez, Adrián García-Moreno, Daniel Toro-Domínguez, Juan Antonio Villatoro-García, Guillermo Barturen, Adoración Martín-Gómez, Kevin Troulé, Gonzalo Gómez-López, Fátima Al-Shahrour, Víctor González-Rumayor, María Peña-Chilet, Joaquín Dopazo, Julio Sáez-Rodríguez, Marta E. Alarcón-Riquelme, Pedro Carmona-Saez
2021 J jnl
A survey of gene expression meta-analysis: methods and applications.
Briefings Bioinform.
Daniel Toro-Domínguez, Juan Antonio Villatoro-García, Jordi Martorell-Marugan, Yolanda Román-Montoya, Marta E. Alarcón-Riquelme, Pedro Carmona-Saez
2019 J jnl
ImaGEO: integrative gene expression meta-analysis from GEO database.
Bioinform.
Daniel Toro-Domínguez, Jordi Martorell-Marugan, Raúl López-Domínguez, Adrián García-Moreno, Víctor González-Rumayor, Marta E. Alarcón-Riquelme, Pedro Carmona-Saez
2017 J jnl
CymeR: cytometry analysis using KNIME, docker and R.
Bioinform.
B. Muchmore, Marta E. Alarcón-Riquelme
2017 J jnl
MetaGenyo: a web tool for meta-analysis of genetic association studies.
BMC Bioinform.
Jordi Martorell-Marugan, Daniel Toro-Domínguez, Marta E. Alarcón-Riquelme, Pedro Carmona-Saez
2017 J jnl
Metagene projection characterizes GEN2.2 and CAL-1 as relevant human plasmacytoid dendritic cell models.
Bioinform.
Pedro Carmona-Saez, Nieves Varela, María José Luque, Daniel Toro-Domínguez, Jordi Martorell-Marugan, Marta E. Alarcón-Riquelme, Concepción Marañón