Markus W. Covert

11 papers Journal 11
YearRankTypeTitle / Venue / Authors
2023 J jnl
Whole-cell modeling of E. coli colonies enables quantification of single-cell heterogeneity in antibiotic responses.
PLoS Comput. Biol.
Christopher J. Skalnik, Sean Y. Cheah, Mica Y. Yang, Mattheus B. Wolff, Ryan K. Spangler, Lee Talman, Jerry H. Morrison, Shayn M. Peirce, Eran Agmon, Markus W. Covert
2022 J jnl
Vivarium: an interface and engine for integrative multiscale modeling in computational biology.
Bioinform.
Eran Agmon, Ryan K. Spangler, Christopher J. Skalnik, William Poole, Shayn M. Peirce, Jerry H. Morrison, Markus W. Covert
2016 J jnl
Deep Learning Automates the Quantitative Analysis of Individual Cells in Live-Cell Imaging Experiments.
PLoS Comput. Biol.
David A. Van Valen, Takamasa Kudo, Keara M. Lane, Derek N. Macklin, Nicolas T. Quach, Mialy M. DeFelice, Inbal Maayan, Yu Tanouchi, Euan A. Ashley, Markus W. Covert
2015 J jnl
NetworkPainter: dynamic intracellular pathway animation in Cytobank.
BMC Bioinform.
Jonathan R. Karr, Harendra Guturu, Edward Y. Chen, Stuart L. Blair, Jonathan M. Irish, Nikesh Kotecha, Markus W. Covert
2015 J jnl
Summary of the DREAM8 Parameter Estimation Challenge: Toward Parameter Identification for Whole-Cell Models.
PLoS Comput. Biol.
Jonathan R. Karr, Alex H. Williams, Jeremy D. Zucker, Andreas Raue, Bernhard Steiert, Jens Timmer, Clemens Kreutz, Simon Wilkinson, Brandon A. Allgood, Brian M. Bot, Bruce R. Hoff, Michael R. Kellen, Markus W. Covert, Gustavo A. Stolovitzky, Pablo Meyer
2014 J jnl
WholeCellSimDB: a hybrid relational/HDF database for whole-cell model predictions.
Database J. Biol. Databases Curation
Jonathan R. Karr, Nolan C. Phillips, Markus W. Covert
2013 J jnl
WholeCellKB: model organism databases for comprehensive whole-cell models.
Nucleic Acids Res.
Jonathan R. Karr, Jayodita C. Sanghvi, Derek N. Macklin, Abhishek Arora, Markus W. Covert
2013 J jnl
WholeCellViz: data visualization for whole-cell models.
BMC Bioinform.
Ruby Lee, Jonathan R. Karr, Markus W. Covert
2012 J jnl
Determining Host Metabolic Limitations on Viral Replication via Integrated Modeling and Experimental Perturbation.
PLoS Comput. Biol.
Elsa W. Birch, Nicholas A. Ruggero, Markus W. Covert
2009 J jnl
A dynamic network of transcription in LPS-treated human subjects.
BMC Syst. Biol.
Junhee Seok, Wenzhong Xiao, Lyle L. Moldawer, Ronald W. Davis, Markus W. Covert
2008 J jnl
Integrating metabolic, transcriptional regulatory and signal transduction models in
Bioinform.
Markus W. Covert, Nan Xiao, Tiffany J. Chen, Jonathan R. Karr