Markus Axer - RankMe

44 papers Journal 18Unranked 26

Year	Rank	Type	Title / Venue / Authors
2025	J	`jnl`	From Fibers to Cells: Fourier-Based Registration Enables Virtual Cresyl Violet Staining From 3D Polarized Light Imaging. CoRR Alexander Oberstraß, Esteban Vaca, Eric Upschulte, Meiqi Niu, Nicola Palomero-Gallagher, David Gräßel, Christian Schiffer, Markus Axer, Katrin Amunts, Timo Dickscheid
2024	—	`conf`	Analyzing Regional Organization of The Human Hippocampus in 3D-PLI Using Contrastive Learning and Geometric Unfolding. ISBI Alexander Oberstraß, Jordan DeKraker, Nicola Palomero-Gallagher, Sascha E. A. Muenzing, Alan C. Evans, Markus Axer, Katrin Amunts, Timo Dickscheid
2024	J	`jnl`	Analyzing Regional Organization of the Human Hippocampus in 3D-PLI Using Contrastive Learning and Geometric Unfolding. CoRR Alexander Oberstraß, Jordan DeKraker, Nicola Palomero-Gallagher, Sascha E. A. Muenzing, Alan C. Evans, Markus Axer, Katrin Amunts, Timo Dickscheid
2024	J	`jnl`	Self-Supervised Representation Learning for Nerve Fiber Distribution Patterns in 3D-PLI. CoRR Alexander Oberstraß, Sascha E. A. Muenzing, Meiqi Niu, Nicola Palomero-Gallagher, Christian Schiffer, Markus Axer, Katrin Amunts, Timo Dickscheid
2022	—	`conf`	GORDA: Graph-Based Orientation Distribution Analysis of SLI Scatterometry Patterns of Nerve Fibres. ISBI Esteban Vaca, Miriam Menzel, Katrin Amunts, Markus Axer, Timo Dickscheid
2022	J	`jnl`	GORDA: Graph-based ORientation Distribution Analysis of SLI scatterometry Patterns of Nerve Fibres. CoRR Esteban Vaca, Miriam Menzel, Katrin Amunts, Markus Axer, Timo Dickscheid
2022	J	`jnl`	Post mortem mapping of connectional anatomy for the validation of diffusion MRI. NeuroImage Anastasia Yendiki, Manisha Aggarwal, Markus Axer, Amy F. D. Howard, Anne-Marie van Cappellen van Walsum, Suzanne N. Haber
2021	J	`jnl`	Scattered Light Imaging: Resolving the substructure of nerve fiber crossings in whole brain sections with micrometer resolution. NeuroImage Miriam Menzel, Jan André Reuter, David Gräßel, Mike Huwer, Philipp Schlömer, Katrin Amunts, Markus Axer
2021	J	`jnl`	fastPLI: A Fiber Architecture Simulation Toolbox for 3D-PLI. J. Open Source Softw. Felix Matuschke, Katrin Amunts, Markus Axer
2020	J	`jnl`	Analytical and fast Fiber Orientation Distribution reconstruction in 3D-Polarized Light Imaging. Medical Image Anal. Abib Alimi, Samuel Deslauriers-Gauthier, Felix Matuschke, Andreas Müller, Sascha E. A. Muenzing, Markus Axer, Rachid Deriche
2019	—	`conf`	Analytical Fiber ODF Reconstruction in 3D Polarized Light Imaging: Performance Assessment. ISBI Abib Alimi, Samuel Deslauriers-Gauthier, Felix Matuschke, Daniel Schmitz, Markus Axer, Rachid Deriche
2019	—	`conf`	Efficient Construction of Geometric Nerve Fiber Models for Simulation with 3D-PLI. Bildverarbeitung für die Medizin Jan André Reuter, Felix Matuschke, Nicole Schubert, Markus Axer
2019	J	`jnl`	FAConstructor: an interactive tool for geometric modeling of nerve fiber architectures in the brain. Int. J. Comput. Assist. Radiol. Surg. Jan André Reuter, Felix Matuschke, Miriam Menzel, Nicole Schubert, Kévin Ginsburger, Cyril Poupon, Katrin Amunts, Markus Axer
2019	—	`conf`	Independent Component Analysis for Noise and Artifact Removal in Three-Dimensional Polarized Light Imaging. BrainComp Kai Benning, Miriam Menzel, Jan André Reuter, Markus Axer
2019	J	`jnl`	MEDUSA: A GPU-based tool to create realistic phantoms of the brain microstructure using tiny spheres. NeuroImage Kévin Ginsburger, Felix Matuschke, Fabrice Poupon, Jean-François Mangin, Markus Axer, Cyril Poupon
2019	—	`conf`	Parallel Particle Advection and Lagrangian Analysis for 3D-PLI Fiber Orientation Maps. LDAV Ali C. Demiralp, Daniel Zielasko, Markus Axer, Tom Vierjahn, Torsten W. Kuhlen
2019	—	`conf`	Tracing of Nerve Fibers Through Brain Regions of Fiber Crossings in Reconstructed 3D-PLI Volumes. Bildverarbeitung für die Medizin Marius Nolden, Nicole Schubert, Daniel Schmitz, Andreas Müller, Markus Axer
2018	—	`conf`	A least squares approach for the reconstruction of nerve fiber orientations from tiltable specimen experiments in 3D-PLI. ISBI Daniel Schmitz, Katrin Amunts, Thomas Lippert, Markus Axer
2018	—	`conf`	Comparison of Self-similarity Measures for Multi-modal Non-rigid Registration of 3D-PLI Brain Images. Bildverarbeitung für die Medizin Sharib Ali, Dehui Lin, Markus Axer, Karl Rohr
2018	—	`conf`	Evaluating local features in high-resolution 3D-PLI data. ISBI Sharib Ali, Markus Axer, Katrin Amunts, Roland Eils, Karl Rohr
2018	J	`jnl`	Rigid and non-rigid registration of polarized light imaging data for 3D reconstruction of the temporal lobe of the human brain at micrometer resolution. NeuroImage Sharib Ali, Stefan Wörz, Katrin Amunts, Roland Eils, Markus Axer, Karl Rohr
2018	—	`conf`	Scale-bundle spline-based non-rigid registration for handling fissures. ISBI Sharib Ali, Katrin Amunts, Roland Eils, Markus Axer, Karl Rohr
2018	—	`conf`	Towards Ultra-High Resolution 3D Reconstruction of a Whole Rat Brain from 3D-PLI Data. CNI@MICCAI Sharib Ali, Martin Schober, Philipp Schlömer, Katrin Amunts, Markus Axer, Karl Rohr
2018	J	`jnl`	Towards ultra-high resolution 3D reconstruction of a whole rat brain from 3D-PLI data. CoRR Sharib Ali, Martin Schober, Philipp Schlömer, Katrin Amunts, Markus Axer, Karl Rohr
2017	—	`conf`	Elastic registration of high-resolution 3D PLI data of the human brain. ISBI Sharib Ali, Karl Rohr, Markus Axer, David Gräßel, Philipp Schlömer, Katrin Amunts, Roland Eils, Stefan Wörz
2017	—	`conf`	Interactive Level-of-Detail Visualization of 3D-Polarized Light Imaging Data Using Spherical Harmonics. EuroVis (Short Papers) Claudia Hänel, Ali C. Demiralp, Markus Axer, David Gräßel, Bernd Hentschel, Torsten W. Kuhlen
2017	—	`conf`	Registration of ultra-high resolution 3D PLI data of human brain sections to their corresponding high-resolution counterpart. ISBI Sharib Ali, Karl Rohr, Markus Axer, Katrin Amunts, Roland Eils, Stefan Wörz
2017	—	`conf`	Spline-Based Multimodal Image Registration of 3D PLI Data of the Human Brain. Bildverarbeitung für die Medizin Sharib Ali, Karl Rohr, David Gräßel, Philipp Schlömer, Katrin Amunts, Roland Eils, Markus Axer, Stefan Wörz
2016	—	`conf`	Morphing Image Masks for Stacked Histological Sections Using Laplace's Equation. Bildverarbeitung für die Medizin Martin Schober, Markus Axer, Marcel Huysegoms, Nicole Schubert, Katrin Amunts, Timo Dickscheid
2016	—	`conf`	Visualization of Vector Fields Derived from 3D Polarized Light Imaging. Bildverarbeitung für die Medizin Nicole Schubert, David Gräßel, Uwe Pietrzyk, Katrin Amunts, Markus Axer
2015	—	`conf`	3D Reconstruction of Histological Rat Brain Images. Bildverarbeitung für die Medizin Nicole Schubert, Mehmet Eylem Kirlangic, Martin Schober, Anh-Minh Huynh, Katrin Amunts, Karl Zilles, Markus Axer
2015	—	`conf`	Finite-Difference Time-Domain Simulation for Three-Dimensional Polarized Light Imaging. BrainComp Miriam Menzel, Markus Axer, Hans De Raedt, Kristel Michielsen
2015	—	`conf`	Reconstructing a Series of Auto-Radiographic Images in Rat Brains. Bildverarbeitung für die Medizin Anh-Minh Huynh, Mehmet Eylem Kirlangic, Nicole Schubert, Martin Schober, Katrin Amunts, Karl Zilles, Markus Axer
2015	—	`conf`	Towards Large-Scale Fiber Orientation Models of the Brain - Automation and Parallelization of a Seeded Region Growing Segmentation of High-Resolution Brain Section Images. BrainComp Anna Lührs, Oliver Bücker, Markus Axer
2015	J	`jnl`	Understanding fiber mixture by simulation in 3D Polarized Light Imaging. NeuroImage Melanie Dohmen, Miriam Menzel, Hendrik Wiese, Julia Reckfort, Frederike Hanke, Uwe Pietrzyk, Karl Zilles, Katrin Amunts, Markus Axer
2013	—	`conf`	Computation of Mutual Information Metric for Image Registration on Multiple GPUs. Euro-Par Workshops Andrew V. Adinetz, Jiri Kraus, Markus Axer, Marcel Huysegoms, Stefan Köhnen, Dirk Pleiter
2013	—	`conf`	Towards a Multiscale, High-Resolution Model of the Human Brain. BrainComp Katrin Amunts, Oliver Bücker, Markus Axer
2012	J	`jnl`	Automatic identification of gray and white matter components in polarized light imaging. NeuroImage Jürgen Dammers, Lukas Breuer, Markus Axer, Melanie Kleiner, Björn Eiben, David Gräßel, Timo Dickscheid, Karl Zilles, Katrin Amunts, Nadim Joni Shah, Uwe Pietrzyk
2012	—	`conf`	Classification of Ambiguous Nerve Fiber Orientations in 3D Polarized Light Imaging. MICCAI (1) Melanie Kleiner, Markus Axer, David Gräßel, Julia Reckfort, Uwe Pietrzyk, Katrin Amunts, Timo Dickscheid
2011	J	`jnl`	A novel approach to the human connectome: Ultra-high resolution mapping of fiber tracts in the brain. NeuroImage Markus Axer, Katrin Amunts, David Gräßel, Christoph Palm, Jürgen Dammers, Hubertus Axer, Uwe Pietrzyk, Karl Zilles
2011	J	`jnl`	High-Resolution Fiber Tract Reconstruction in the Human Brain by Means of Three-Dimensional Polarized Light Imaging. Frontiers Neuroinformatics Markus Axer, David Gräßel, Melanie Kleiner, Jürgen Dammers, Timo Dickscheid, Julia Reckfort, Tim Hütz, Björn Eiben, Uwe Pietrzyk, Karl Zilles, Katrin Amunts
2011	J	`jnl`	Microstructural Analysis of Human White Matter Architecture Using Polarized Light Imaging: Views from Neuroanatomy. Frontiers Neuroinformatics Hubertus Axer, Sindy Beck, Markus Axer, Friederike Schuchardt, Jörn Heepe, Anja Flücken, Martina Axer, Andreas Prescher, Otto W. Witte
2010	J	`jnl`	Signal enhancement in polarized light imaging by means of independent component analysis. NeuroImage Jürgen Dammers, Markus Axer, David Gräßel, Christoph Palm, Karl Zilles, Katrin Amunts, Uwe Pietrzyk
2001	—	`conf`	Die Orientierung der Nervenfasern im menschlichen Gehirn sichtbar gemacht. Bildverarbeitung für die Medizin Hubertus Axer, Timo Krings, Markus Axer, Diedrich Graf v. Keyserlingk