Mark Yandell

14 papers Journal 13
YearRankTypeTitle / Venue / Authors
2025 J jnl
A machine learning decision support tool optimizes WGS utilization in a neonatal intensive care unit.
npj Digit. Medicine
Edwin F. Juarez, Bennet Peterson, Erica Sanford Kobayashi, Sheldon Gilmer, Laura E. Tobin, Brandan Schultz, Jerica Lenberg, Jeanne Carroll, Shiyu Bai-Tong, Nathaly M. Sweeney, Curtis Beebe, Lawrence Stewart, Lauren Olsen, Julie Reinke, Elizabeth A. Kiernan, Rebecca Reimers, Kristen Wigby, Chris Tackaberry, Mark Yandell, Charlotte Hobbs, Matthew N. Bainbridge
2021 J jnl
A Poisson binomial-based statistical testing framework for comorbidity discovery across electronic health record datasets.
Nat. Comput. Sci.
Gordon Lemmon, Sergiusz Wesolowski, Alex Henrie, Martin Tristani-Firouzi, Mark Yandell
2018 J jnl
Predicting gene structure changes resulting from genetic variants via exon definition features.
Bioinform.
William H. Majoros, Carson Holt, Michael Campbell, Doreen Ware, Mark Yandell, Timothy E. Reddy
2018 J jnl
The VAAST Variant Prioritizer (VVP): ultrafast, easy to use whole genome variant prioritization tool.
BMC Bioinform.
Steven Flygare, Edgar Javier Hernandez, Lon Phan, Barry Moore, Man Li, Anthony P. Fejes, Hao Hu, Karen Eilbeck, Chad D. Huff, Lynn Jorde, Martin G. Reese, Mark Yandell
2017 J jnl
High-throughput interpretation of gene structure changes in human and nonhuman resequencing data, using ACE.
Bioinform.
William H. Majoros, Michael Campbell, Carson Holt, Erin K. DeNardo, Doreen Ware, Andrew S. Allen, Mark Yandell, Timothy E. Reddy
2015 J jnl
Wham: Identifying Structural Variants of Biological Consequence.
PLoS Comput. Biol.
Zev N. Kronenberg, Edward J. Osborne, Kelsey R. Cone, Brett J. Kennedy, Eric T. Domyan, Michael D. Shapiro, Nels C. Elde, Mark Yandell
2013 J jnl
ImagePlane: An Automated Image Analysis Pipeline for High-Throughput Screens Using the Planarian
J. Comput. Biol.
Steven Flygare, Michael Campbell, Robert Mars Ross, Barry Moore, Mark Yandell
2011 J jnl
MAKER2: an annotation pipeline and genome-database management tool for second-generation genome projects.
BMC Bioinform.
Carson Holt, Mark Yandell
2009 J jnl
Quantitative measures for the management and comparison of annotated genomes.
BMC Bioinform.
Karen Eilbeck, Barry Moore, Carson Holt, Mark Yandell
2008 J jnl
Genome-Wide Analysis of Human Disease Alleles Reveals That Their Locations Are Correlated in Paralogous Proteins.
PLoS Comput. Biol.
Mark Yandell, Barry Moore, Fidel Salas, Chris Mungall, Andrew MacBride, Charles White, Martin G. Reese
2006 J jnl
Large-Scale Trends in the Evolution of Gene Structures within 11 Animal Genomes.
PLoS Comput. Biol.
Mark Yandell, Chris Mungall, Chris Smith, Simon Prochnik, Joshua S. Kaminker, George Hartzell, Suzanna Lewis, Gerald M. Rubin
2003 — book
BLAST - an essential guide to the basic local alignment search tool.
Ian Korf, Mark Yandell, Joseph A. Bedell
2003 J jnl
Identification of key concepts in biomedical literature using a modified Markov heuristic.
Bioinform.
William H. Majoros, G. M. Subramanian, Mark Yandell
2002 J jnl
The Celera Discovery SystemTM.
Nucleic Acids Res.
Anthony R. Kerlavage, Vivien Bonazzi, Matteo di Tommaso, Charles Lawrence, Peter Li, Frank Mayberry, Richard J. Mural, Marc Nodell, Mark Yandell, Jinghui Zhang, Paul D. Thomas