Mark R. Chance

28 papers B 1Misc 4Journal 19Unranked 4
YearRankTypeTitle / Venue / Authors
2022 J jnl
Functional characterization of co-phosphorylation networks.
Bioinform.
Marzieh Ayati, Serhan Yilmaz, Mark R. Chance, Mehmet Koyutürk
2021 J jnl
Co-phosphorylation networks reveal subtype-specific signaling modules in breast cancer.
Bioinform.
Marzieh Ayati, Mark R. Chance, Mehmet Koyutürk
2019 — conf
CoPhosK: A Method for Comprehensive Kinase Substrate Annotation using Co-phosphorylation Analysis.
BCB
Marzieh Ayati, Danica Wiredja, Daniela Schlatzer, Sean Maxwell, Ming Li, Mehmet Koyutürk, Mark R. Chance
2019 J jnl
CoPhosK: A method for comprehensive kinase substrate annotation using co-phosphorylation analysis.
PLoS Comput. Biol.
Marzieh Ayati, Danica Wiredja, Daniela Schlatzer, Sean Maxwell, Ming Li, Mehmet Koyutürk, Mark R. Chance
2017 J jnl
Linearity of network proximity measures: implications for set-based queries and significance testing.
Bioinform.
Sean Maxwell, Mark R. Chance, Mehmet Koyutürk
2017 J jnl
The KSEA App: a web-based tool for kinase activity inference from quantitative phosphoproteomics.
Bioinform.
Danica Wiredja, Mehmet Koyutürk, Mark R. Chance
2016 J jnl
A dynamical systems model of progesterone receptor interactions with inflammation in human parturition.
BMC Syst. Biol.
Douglas Brubaker, Alethea Barbaro, Mark R. Chance, Sam Mesiano
2016 — conf
MoBaS on Phosphorylation Data.
BCB
Marzieh Ayati, Danica Wiredja, Daniela Schlatzer, Goutham Narla, Mark R. Chance, Mehmet Koyutürk
2015 J jnl
MOBAS: identification of disease-associated protein subnetworks using modularity-based scoring.
EURASIP J. Bioinform. Syst. Biol.
Marzieh Ayati, Sinan Erten, Mark R. Chance, Mehmet Koyutürk
2014 Misc conf
Drug Intervention Response Predictions with Paradigm (DIRPP) Identifies Drug Resistant Cancer Cell Lines and Pathway Mechanisms of Resistance.
Pacific Symposium on Biocomputing
Douglas Brubaker, Analisa Difeo, Yanwen Chen, Taylor Pearl, Kaide Zhai, Gürkan Bebek, Mark R. Chance, Jill S. Barnholtz-Sloan
2014 — conf
Efficiently Enumerating All Connected Induced Subgraphs of a Large Molecular Network.
AlCoB
Sean Maxwell, Mark R. Chance, Mehmet Koyutürk
2013 J jnl
Network Signatures of Survival in Glioblastoma Multiforme.
PLoS Comput. Biol.
Vishal N. Patel, Giridharan Gokulrangan, Salim A. Chowdhury, Yanwen Chen, Andrew E. Sloan, Mehmet Koyutürk, Jill S. Barnholtz-Sloan, Mark R. Chance
2013 Misc conf
Session introduction.
Pacific Symposium on Biocomputing
Gürkan Bebek, Mehmet Koyutürk, Thomas LaFramboise, Benjamin J. Raphael, Mark R. Chance
2012 — conf
Algorithms for detecting complementary SNPs within a region of interest that are associated with diseases.
BCB
Sinan Erten, Marzieh Ayati, Yu Liu, Mark R. Chance, Mehmet Koyutürk
2012 J jnl
Gene interaction enrichment and network analysis to identify dysregulated pathways and their interactions in complex diseases.
BMC Syst. Biol.
Yu Liu, Mehmet Koyutürk, Jill S. Barnholtz-Sloan, Mark R. Chance
2012 J jnl
Gene, pathway and network frameworks to identify epistatic interactions of single nucleotide polymorphisms derived from GWAS data.
BMC Syst. Biol.
Yu Liu, Sean Maxwell, Tao Feng, Xiaofeng Zhu, Robert C. Elston, Mehmet Koyutürk, Mark R. Chance
2012 J jnl
MAGNET: MicroArray Gene expression and Network Evaluation Toolkit.
Nucleic Acids Res.
George C. Linderman, Mark R. Chance, Gürkan Bebek
2012 J jnl
Network biology methods integrating biological data for translational science.
Briefings Bioinform.
Gürkan Bebek, Mehmet Koyutürk, Nathan D. Price, Mark R. Chance
2012 J jnl
Pairwise protein expression classifier for candidate biomarker discovery for early detection of human disease prognosis.
BMC Bioinform.
Parminder Kaur, Daniela Schlatzer, Kenneth Cooke, Mark R. Chance
2012 J jnl
Splitting random forest (SRF) for determining compact sets of genes that distinguish between cancer subtypes.
J. Clin. Bioinform.
Xiaowei Guan, Mark R. Chance, Jill S. Barnholtz-Sloan
2011 J jnl
BiC: a web server for calculating bimodality of coexpression between gene and protein networks.
Bioinform.
George C. Linderman, Vishal N. Patel, Mark R. Chance, Gürkan Bebek
2011 J jnl
Frontiers of Oncology: Biobanking Resources for the 21
J. Clin. Bioinform.
Jill S. Barnholtz-Sloan, Mark R. Chance
2011 Misc conf
Session Introduction.
Pacific Symposium on Biocomputing
Gürkan Bebek, Mehmet Koyutürk, Mark R. Chance, Nathan D. Price
2011 J jnl
Subnetwork State Functions Define Dysregulated Subnetworks in Cancer.
J. Comput. Biol.
Salim A. Chowdhury, Rod K. Nibbe, Mark R. Chance, Mehmet Koyutürk
2011 Misc conf
Systems Biology Analyses of Gene Expression and Genome Wide Association Study Data in Obstructive Sleep Apnea.
Pacific Symposium on Biocomputing
Yu Liu, Sanjay R. Patel, Rod K. Nibbe, Sean Maxwell, Salim A. Chowdhury, Mehmet Koyutürk, Xiaofeng Zhu, Emma Larkin, Sarah Buxbaum, Naresh Punjabi, Sina Gharib, Susan Redline, Mark R. Chance
2010 J jnl
An Integrative -omics Approach to Identify Functional Sub-Networks in Human Colorectal Cancer.
PLoS Comput. Biol.
Rod K. Nibbe, Mehmet Koyutürk, Mark R. Chance
2010 J jnl
PETALS: Proteomic Evaluation and Topological Analysis of a mutated Locus' Signaling.
BMC Bioinform.
Gürkan Bebek, Vishal N. Patel, Mark R. Chance
2010 B conf
Subnetwork State Functions Define Dysregulated Subnetworks in Cancer.
RECOMB
Salim A. Chowdhury, Rod K. Nibbe, Mark R. Chance, Mehmet Koyutürk