Mark L. Blaxter

21 papers Journal 21
YearRankTypeTitle / Venue / Authors
2025 J jnl
tidk: a toolkit to rapidly identify telomeric repeats from genomic datasets.
Bioinform.
Max R. Brown, Pablo Manuel Gonzalez de La Rosa, Mark L. Blaxter
2023 J jnl
MitoHiFi: a python pipeline for mitochondrial genome assembly from PacBio high fidelity reads.
BMC Bioinform.
Marcela Uliano-Silva, João Gabriel R. N. Ferreira, Ksenia Krasheninnikova, Mark L. Blaxter, Nova Mieszkowska, Neil Hall, Peter Holland, Richard Durbin, Thomas Richards, Paul J. Kersey, Peter Hollingsworth, Willie Wilson, Alex Twyford, Ester Gaya, Mara Lawniczak, Owen Lewis, Gavin Broad, Fergal Martin, Michelle Hart, Ian Barnes, Giulio Formenti, Linelle Abueg, James W. Torrance, Eugene W. Myers, Shane A. McCarthy
2017 J jnl
BlobTools: Interrogation of genome assemblies.
F1000Research
Dominik R. Laetsch, Mark L. Blaxter
2017 J jnl
GenomeHubs: simple containerized setup of a custom Ensembl database and web server for any species.
Database J. Biol. Databases Curation
Richard J. Challis, Sujai Kumar, Lewis Stevens, Mark L. Blaxter
2015 J jnl
ReproPhylo: An Environment for Reproducible Phylogenomics.
PLoS Comput. Biol.
Amir Szitenberg, Max John, Mark L. Blaxter, David H. Lunt
2015 J jnl
Statistical models for RNA-seq data derived from a two-condition 48-replicate experiment.
Bioinform.
Marek Gierlinski, Christian Cole, Pietà Schofield, Nicholas J. Schurch, Alexander Sherstnev, Vijender Singh, Nicola Wrobel, Karim Gharbi, Gordon G. Simpson, Tom Owen-Hughes, Mark L. Blaxter, Geoffrey J. Barton
2015 J jnl
poRe: an R package for the visualization and analysis of nanopore sequencing data.
Bioinform.
Mick Watson, Marian Thomson, Judith E. Risse, Richard Talbot, Javier Santoyo-Lopez, Karim Gharbi, Mark L. Blaxter
2013 J jnl
Badger - an accessible genome exploration environment.
Bioinform.
Ben Elsworth, Martin O. Jones, Mark L. Blaxter
2013 J jnl
afterParty: turning raw transcriptomes into permanent resources.
BMC Bioinform.
Martin O. Jones, Mark L. Blaxter
2012 J jnl
959 Nematode Genomes: a semantic wiki for coordinating sequencing projects.
Nucleic Acids Res.
Sujai Kumar, Philipp H. Schiffer, Mark L. Blaxter
2011 J jnl
iPhy: an integrated phylogenetic workbench for supermatrix analyses.
BMC Bioinform.
Martin O. Jones, Georgios D. Koutsovoulos, Mark L. Blaxter
2010 J jnl
Linking toxicant physiological mode of action with induced gene expression changes in Caenorhabditis elegans.
BMC Syst. Biol.
Suresh Swain, Jodie F. Wren, Stephen R. Stürzenbaum, Peter Kille, A. John Morgan, Tjalling Jager, Martijs J. Jonker, Peter K. Hankard, Claus Svendsen, Jenifer Owen, Ann Hedley, Mark L. Blaxter, David J. Spurgeon
2008 J jnl
ButterflyBase: a platform for lepidopteran genomics.
Nucleic Acids Res.
Alexie Papanicolaou, Steffi Gebauer-Jung, Mark L. Blaxter, W. Owen McMillan, Chris D. Jiggins
2008 J jnl
annot8r: GO, EC and KEGG annotation of EST datasets.
BMC Bioinform.
Ralf Schmid, Mark L. Blaxter
2006 J jnl
TaxMan: a taxonomic database manager.
BMC Bioinform.
Martin O. Jones, Mark L. Blaxter
2005 J jnl
Exploring Parasite Gene Space.
BMC Bioinform.
James Wasmuth, Ralf Schmid, Alasdair Anthony, John Parkinson, Mark L. Blaxter
2004 J jnl
NEMBASE: a resource for parasitic nematode ESTs.
Nucleic Acids Res.
John Parkinson, Claire Whitton, Ralf Schmid, Marian Thomson, Mark L. Blaxter
2004 J jnl
PartiGene-constructing partial genomes.
Bioinform.
John Parkinson, Alasdair Anthony, James Wasmuth, Ralf Schmid, Ann Hedley, Mark L. Blaxter
2004 J jnl
prot4EST: Translating Expressed Sequence Tags from neglected genomes.
BMC Bioinform.
James Wasmuth, Mark L. Blaxter
2003 J jnl
SimiTri-visualizing similarity relationships for groups of sequences.
Bioinform.
John Parkinson, Mark L. Blaxter
2002 J jnl
Making sense of EST sequences by CLOBBing them.
BMC Bioinform.
John Parkinson, David B. Guiliano, Mark L. Blaxter