Mark Jenkinson

129 papers A* 1A 2Misc 1Journal 85Unranked 39

Year	Rank	Type	Title / Venue / Authors
2026	J	`jnl`	Denoising diffusion networks for normative modeling in neuroimaging. CoRR Luke Whitbread, Lyle J. Palmer, Mark Jenkinson
2025	J	`jnl`	From Healthy Scans to Annotated Tumors: A Tumor Fabrication Framework for 3D Brain MRI Synthesis. CoRR Nayu Dong, Townim F. Chowdhury, Hieu Phan, Mark Jenkinson, Johan Verjans, Zhibin Liao
2025	Misc	`conf`	From Healthy Scans to Annotated Tumors: A Tumor Fabrication Framework for 3D Brain Mri Synthesis. DICTA Nanyu Dong, Townim F. Chowdhury, Hieu Phan, Mark Jenkinson, Johan Verjans, Zhibin Liao
2025	J	`jnl`	Validation of a CT-brain analysis tool for measuring global cortical atrophy in older patient cohorts. CoRR Sukhdeep Bal, Emma Colbourne, Jasmine Gan, Ludovica Griffanti, Taylor Hanayik, Nele Demeyere, Jim Davies, Sarah T. Pendlebury, Mark Jenkinson
2024	J	`jnl`	Anatomically plausible segmentations: Explicitly preserving topology through prior deformations. Medical Image Anal. Madeleine K. Wyburd, Nicola K. Dinsdale, Mark Jenkinson, Ana I. L. Namburete
2023	J	`jnl`	Automated detection of cerebral microbleeds on MR images using knowledge distillation framework. Frontiers Neuroinformatics Vaanathi Sundaresan, Christoph Arthofer, Giovanna Zamboni, Andrew G. Murchison, Robert A. Dineen, Peter M. Rothwell, Dorothee P. Auer, Chaoyue Wang, Karla L. Miller, Benjamin C. Tendler, Fidel Alfaro-Almagro, Stamatios N. Sotiropoulos, Nikola Sprigg, Ludovica Griffanti, Mark Jenkinson
2023	—	`conf`	Improved Flexibility and Interpretability of Large Vessel Stroke Prognostication Using Image Synthesis and Multi-task Learning. MICCAI (5) Minyan Zeng, Yutong Xie, Minh-Son To, Lauren Oakden-Rayner, Luke Whitbread, Stephen Bacchi, Alix Bird, Luke Smith, Rebecca Scroop, Timothy Kleinig, Jim Jannes, Lyle J. Palmer, Mark Jenkinson
2023	J	`jnl`	Normative models for neuroimaging markers: Impact of model selection, sample size and evaluation criteria. NeuroImage Jelena Bozek, Ludovica Griffanti, Stephan Lau, Mark Jenkinson
2023	A*	`conf`	SFHarmony: Source Free Domain Adaptation for Distributed Neuroimaging Analysis. ICCV Nicola K. Dinsdale, Mark Jenkinson, Ana I. L. Namburete
2023	J	`jnl`	SFHarmony: Source Free Domain Adaptation for Distributed Neuroimaging Analysis. CoRR Nicola K. Dinsdale, Mark Jenkinson, Ana I. L. Namburete
2023	J	`jnl`	Segmentation method for cerebral blood vessels from MRA using hysteresis. CoRR Georgia Kenyon, Stephan Lau, Michael A. Chappell, Mark Jenkinson
2023	J	`jnl`	Tensor image registration library: Deformable registration of stand-alone histology images to whole-brain post-mortem MRI data. NeuroImage István N. Huszár, Menuka Pallebage-Gamarallage, Sarah Bangerter-Christensen, Hannah Brooks, Sean P. Fitzgibbon, Sean Foxley, Marlies Hiemstra, Amy F. D. Howard, Saâd Jbabdi, Daniel Z. L. Kor, Anna Leonte, Jeroen Mollink, Adele Smart, Benjamin C. Tendler, Martin R. Turner, Olaf Ansorge, Karla L. Miller, Mark Jenkinson
2022	J	`jnl`	A Comparison of Cranial Cavity Extraction Tools for Non-contrast Enhanced CT Scans in Acute Stroke Patients. Neuroinformatics Laurence Vass, M. J. Moore, Taylor Hanayik, Grant Mair, Sarah T. Pendlebury, Nele Demeyere, Mark Jenkinson
2022	—	`conf`	FedHarmony: Unlearning Scanner Bias with Distributed Data. MICCAI (8) Nicola K. Dinsdale, Mark Jenkinson, Ana I. L. Namburete
2022	J	`jnl`	FedHarmony: Unlearning Scanner Bias with Distributed Data. CoRR Nicola K. Dinsdale, Mark Jenkinson, Ana I. L. Namburete
2022	J	`jnl`	How certain are your uncertainties? CoRR Luke Whitbread, Mark Jenkinson
2022	—	`conf`	Mutual Information Neural Estimation for Unsupervised Multi-Modal Registration of Brain Images. EMBC Gerard Snaauw, Michele Sasdelli, Gabriel Maicas, Stephan Lau, Johan Verjans, Mark Jenkinson, Gustavo Carneiro
2022	J	`jnl`	Mutual information neural estimation for unsupervised multi-modal registration of brain images. CoRR Gerard Snaauw, Michele Sasdelli, Gabriel Maicas, Stephan Lau, Johan Verjans, Mark Jenkinson, Gustavo Carneiro
2022	—	`conf`	Omni-Supervised Domain Adversarial Training for White Matter Hyperintensity Segmentation in the UK Biobank. ISBI Vaanathi Sundaresan, Nicola K. Dinsdale, Mark Jenkinson, Ludovica Griffanti
2022	J	`jnl`	STAMP: Simultaneous Training and Model Pruning for low data regimes in medical image segmentation. Medical Image Anal. Nicola K. Dinsdale, Mark Jenkinson, Ana I. L. Namburete
2022	J	`jnl`	Subcortical segmentation of the fetal brain in 3D ultrasound using deep learning. NeuroImage Linde S. Hesse, Moska Aliasi, Felipe Moser, Monique C. Haak, Weidi Xie, Mark Jenkinson, Ana I. L. Namburete
2022	—	`conf`	Uncertainty Categories in Medical Image Segmentation: A Study of Source-Related Diversity. UNSURE@MICCAI Luke Whitbread, Mark Jenkinson
2021	—	`conf`	Assessment of Regional Cortical Development Through Fissure Based Gestational Age Estimation in 3D Fetal Ultrasound. UNSURE/PIPPI@MICCAI Madeleine K. Wyburd, Linde S. Hesse, Moska Aliasi, Mark Jenkinson, Aris T. Papageorghiou, Monique C. Haak, Ana I. L. Namburete
2021	J	`jnl`	Automated Detection of Candidate Subjects With Cerebral Microbleeds Using Machine Learning. Frontiers Neuroinformatics Vaanathi Sundaresan, Christoph Arthofer, Giovanna Zamboni, Robert A. Dineen, Peter M. Rothwell, Stamatios N. Sotiropoulos, Dorothee P. Auer, Daniel J. Tozer, Hugh S. Markus, Karla L. Miller, Iulius Dragonu, Nikola Sprigg, Fidel Alfaro-Almagro, Mark Jenkinson, Ludovica Griffanti
2021	J	`jnl`	Brain tumour segmentation using a triplanar ensemble of U-Nets. CoRR Vaanathi Sundaresan, Ludovica Griffanti, Mark Jenkinson
2021	J	`jnl`	Challenges for machine learning in clinical translation of big data imaging studies. CoRR Nicola K. Dinsdale, Emma Bluemke, Vaanathi Sundaresan, Mark Jenkinson, Stephen M. Smith, Ana I. L. Namburete
2021	J	`jnl`	Comparison of domain adaptation techniques for white matter hyperintensity segmentation in brain MR images. Medical Image Anal. Vaanathi Sundaresan, Giovanna Zamboni, Nicola K. Dinsdale, Peter M. Rothwell, Ludovica Griffanti, Mark Jenkinson
2021	J	`jnl`	Deep learning-based unlearning of dataset bias for MRI harmonisation and confound removal. NeuroImage Nicola K. Dinsdale, Mark Jenkinson, Ana I. L. Namburete
2021	J	`jnl`	Integrating large-scale neuroimaging research datasets: Harmonisation of white matter hyperintensity measurements across Whitehall and UK Biobank datasets. NeuroImage Valentina Bordin, Ilaria Bertani, Irene Mattioli, Vaanathi Sundaresan, Paul McCarthy, Sana Suri, Eniko Zsoldos, Nicola Filippini, Abda Mahmood, Luca Melazzini, Maria Marcella Laganà, Giovanna Zamboni, Archana Singh-Manoux, Mika Kivimäki, Klaus P. Ebmeier, Giuseppe Baselli, Mark Jenkinson, Clare E. Mackay, Eugene P. Duff, Ludovica Griffanti
2021	J	`jnl`	Learning patterns of the ageing brain in MRI using deep convolutional networks. NeuroImage Nicola K. Dinsdale, Emma Bluemke, Stephen M. Smith, Zobair Arya, Diego Vidaurre, Mark Jenkinson, Ana I. L. Namburete
2021	—	`conf`	Self-Supervised Lesion Change Detection and Localisation in Longitudinal Multiple Sclerosis Brain Imaging. MICCAI (7) Minh-Son To, Ian G. Sarno, Chee Chong, Mark Jenkinson, Gustavo Carneiro
2021	J	`jnl`	Self-supervised Lesion Change Detection and Localisation in Longitudinal Multiple Sclerosis Brain Imaging. CoRR Minh-Son To, Ian G. Sarno, Chee Chong, Mark Jenkinson, Gustavo Carneiro
2021	—	`conf`	TEDS-Net: Enforcing Diffeomorphisms in Spatial Transformers to Guarantee Topology Preservation in Segmentations. MICCAI (1) Madeleine K. Wyburd, Nicola K. Dinsdale, Ana I. L. Namburete, Mark Jenkinson
2021	J	`jnl`	TEDS-Net: Enforcing Diffeomorphisms in Spatial Transformers to Guarantee Topology Preservation in Segmentations. CoRR Madeleine K. Wyburd, Nicola K. Dinsdale, Ana I. L. Namburete, Mark Jenkinson
2021	J	`jnl`	Triplanar ensemble U-Net model for white matter hyperintensities segmentation on MR images. Medical Image Anal. Vaanathi Sundaresan, Giovanna Zamboni, Peter M. Rothwell, Mark Jenkinson, Ludovica Griffanti
2020	—	`conf`	A 2-Step Deep Learning Method with Domain Adaptation for Multi-Centre, Multi-Vendor and Multi-Disease Cardiac Magnetic Resonance Segmentation. M&Ms and EMIDEC/STACOM@MICCAI Jorge Corral Acero, Vaanathi Sundaresan, Nicola K. Dinsdale, Vicente Grau, Mark Jenkinson
2020	—	`conf`	Brain Tumour Segmentation Using a Triplanar Ensemble of U-Nets on MR Images. BrainLes@MICCAI (1) Vaanathi Sundaresan, Ludovica Griffanti, Mark Jenkinson
2020	—	`conf`	Cortical Plate Segmentation Using CNNs in 3D Fetal Ultrasound. MIUA Madeleine K. Wyburd, Mark Jenkinson, Ana I. L. Namburete
2020	J	`jnl`	The developing Human Connectome Project (dHCP) automated resting-state functional processing framework for newborn infants. NeuroImage Sean P. Fitzgibbon, Samuel J. Harrison, Mark Jenkinson, Luke Baxter, Emma C. Robinson, Matteo Bastiani, Jelena Bozek, Vyacheslav Karolis, Lucilio Cordero-Grande, Anthony N. Price, Emer J. Hughes, Antonios Makropoulos, Jonathan Passerat-Palmbach, Andreas Schuh, Jianliang Gao, Seyedeh-Rezvan Farahibozorg, Jonathan O'Muircheartaigh, Judit Ciarrusta, Jesper Andersson
2020	—	`conf`	Unlearning Scanner Bias for MRI Harmonisation in Medical Image Segmentation. MIUA Nicola K. Dinsdale, Mark Jenkinson, Ana I. L. Namburete
2020	—	`conf`	Unlearning Scanner Bias for MRI Harmonisation. MICCAI (2) Nicola K. Dinsdale, Mark Jenkinson, Ana I. L. Namburete
2019	J	`jnl`	Assessing Reliability of Myocardial Blood Flow After Motion Correction With Dynamic PET Using a Bayesian Framework. IEEE Trans. Medical Imaging Antoine Saillant, Ian Armstrong, Vijay P. Shah, Sven Zühlsdorf, Charles Hayden, Jérôme Declerck, Kimberley Saint, Matthew Memmott, Mark Jenkinson, Michael A. Chappell
2019	J	`jnl`	Automated lesion segmentation with BIANCA: Impact of population-level features, classification algorithm and locally adaptive thresholding. NeuroImage Vaanathi Sundaresan, Giovanna Zamboni, Campbell Le Heron, Peter M. Rothwell, Masud Husain, Marco Battaglini, Nicola De Stefano, Mark Jenkinson, Ludovica Griffanti
2019	J	`jnl`	Modelling the distribution of white matter hyperintensities due to ageing on MRI images using Bayesian inference. NeuroImage Vaanathi Sundaresan, Ludovica Griffanti, Petya Kindalova, Fidel Alfaro-Almagro, Giovanna Zamboni, Peter M. Rothwell, Thomas E. Nichols, Mark Jenkinson
2019	J	`jnl`	Optimising neonatal fMRI data analysis: Design and validation of an extended dHCP preprocessing pipeline to characterise noxious-evoked brain activity in infants. NeuroImage Luke Baxter, Sean P. Fitzgibbon, Fiona Moultrie, Sezgi Goksan, Mark Jenkinson, Stephen M. Smith, Jesper L. R. Andersson, Eugene P. Duff, Rebeccah Slater
2019	—	`conf`	Spatial Warping Network for 3D Segmentation of the Hippocampus in MR Images. MICCAI (3) Nicola K. Dinsdale, Mark Jenkinson, Ana I. L. Namburete
2018	J	`jnl`	Classification and characterization of periventricular and deep white matter hyperintensities on MRI: A study in older adults. NeuroImage Ludovica Griffanti, Mark Jenkinson, Sana Suri, Eniko Zsoldos, Abda Mahmood, Nicola Filippini, Claire E. Sexton, Anya Topiwala, Charlotte Allan, Mika Kivimäki, Archana Singh-Manoux, Klaus P. Ebmeier, Clare E. Mackay, Giovanna Zamboni
2018	J	`jnl`	Image processing and Quality Control for the first 10, 000 brain imaging datasets from UK Biobank. NeuroImage Fidel Alfaro-Almagro, Mark Jenkinson, Neal K. Bangerter, Jesper L. R. Andersson, Ludovica Griffanti, Gwenaëlle Douaud, Stamatios N. Sotiropoulos, Saâd Jbabdi, Moisés Hernández-Fernández, Emmanuel Vallée, Diego Vidaurre, Matthew A. Webster, Paul McCarthy, Christopher Rorden, Alessandro Daducci, Daniel C. Alexander, Hui Zhang, Iulius Dragonu, Paul M. Matthews, Karla L. Miller, Stephen M. Smith
2017	J	`jnl`	BIDS apps: Improving ease of use, accessibility, and reproducibility of neuroimaging data analysis methods. PLoS Comput. Biol. Krzysztof J. Gorgolewski, Fidel Alfaro-Almagro, Tibor Auer, Pierre Bellec, Mihai Capota, M. Mallar Chakravarty, Nathan William Churchill, Alexander Li Cohen, R. Cameron Craddock, Gabriel A. Devenyi, Anders Eklund, Oscar Esteban, Guillaume Flandin, Satrajit S. Ghosh, J. Swaroop Guntupalli, Mark Jenkinson, Anisha Keshavan, Gregory Kiar, Franziskus Liem, Pradeep Reddy Raamana, David Raffelt, Christopher John Steele, Pierre-Olivier Quirion, Robert E. Smith, Stephen C. Strother, Gaël Varoquaux, Yida Wang, Tal Yarkoni, Russell A. Poldrack
2017	J	`jnl`	Denoising spinal cord fMRI data: Approaches to acquisition and analysis. NeuroImage Falk Eippert, Yazhuo Kong, Mark Jenkinson, Irene Tracey, Jonathan C. W. Brooks
2017	J	`jnl`	Evaluating fibre orientation dispersion in white matter: Comparison of diffusion MRI, histology and polarized light imaging. NeuroImage Jeroen Mollink, Michiel Kleinnijenhuis, Anne-Marie van Cappellen van Walsum, Stamatios N. Sotiropoulos, Michiel Cottaar, Christopher Mirfin, Mattias P. Heinrich, Mark Jenkinson, Menuka Pallebage-Gamarallage, Olaf Ansorge, Saâd Jbabdi, Karla L. Miller
2017	—	`ed.`	Medical Computer Vision and Bayesian and Graphical Models for Biomedical Imaging - MICCAI 2016 International Workshops, MCV and BAMBI, Athens, Greece, October 21, 2016, Revised Selected Papers MCV/BAMBI@MICCAI Henning Müller, B. Michael Kelm, Tal Arbel, Weidong Cai, Manual Jorge Cardoso, Georg Langs, Bjoern H. Menze, Dimitris N. Metaxas, Albert Montillo, William M. Wells III, Shaoting Zhang, Albert C. S. Chung, Mark Jenkinson, Annemie Ribbens
2016	J	`jnl`	A multi-modal parcellation of human cerebral cortex. Nat. Matthew F. Glasser, Timothy S. Coalson, Emma C. Robinson, Carl D. Hacker, John W. Harwell, Essa Yacoub, Kâmil Ugurbil, Jesper L. R. Andersson, Christian F. Beckmann, Mark Jenkinson, Stephen M. Smith, David C. Van Essen
2016	J	`jnl`	Automated segmentation of the substantia nigra, subthalamic nucleus and red nucleus in 7 T data at young and old age. NeuroImage Eelke Visser, Max C. Keuken, Birte U. Forstmann, Mark Jenkinson
2016	J	`jnl`	Automatic segmentation of the striatum and globus pallidus using MIST: Multimodal Image Segmentation Tool. NeuroImage Eelke Visser, Max C. Keuken, Gwenaëlle Douaud, Véronique Gaura, Anne-Catherine Bachoud-Lévi, Philippe Remy, Birte U. Forstmann, Mark Jenkinson
2016	J	`jnl`	BIANCA (Brain Intensity AbNormality Classification Algorithm): A new tool for automated segmentation of white matter hyperintensities. NeuroImage Ludovica Griffanti, Giovanna Zamboni, Aamira Khan, Linxin Li, Guendalina Bonifacio, Vaanathi Sundaresan, Ursula G. Schulz, Wilhelm Kuker, Marco Battaglini, Peter M. Rothwell, Mark Jenkinson
2016	J	`jnl`	Challenges in the reproducibility of clinical studies with resting state fMRI: An example in early Parkinson's disease. NeuroImage Ludovica Griffanti, Michal Rolinski, Konrad Szewczyk-Krolikowski, Ricarda A. Menke, Nicola Filippini, Giovanna Zamboni, Mark Jenkinson, Michele T. M. Hu, Clare E. Mackay
2016	—	`conf`	Construction of a neonatal cortical surface atlas using multimodal surface matching. ISBI Jelena Bozek, Sean P. Fitzgibbon, Robert Wright, Daniel Rueckert, Mark Jenkinson, Emma C. Robinson
2016	—	`conf`	Iterative Dual LDA: A Novel Classification Algorithm for Resting State fMRI. MLMI@MICCAI Zobair Arya, Ludovica Griffanti, Clare E. Mackay, Mark Jenkinson
2016	J	`jnl`	Multi-modal characterization of rapid anterior hippocampal volume increase associated with aerobic exercise. NeuroImage Adam G. Thomas, Andrea Dennis, Nancy B. Rawlings, Charlotte J. Stagg, Lucy Matthews, Martyn Morris, Shannon H. Kolind, Sean Foxley, Mark Jenkinson, Thomas E. Nichols, Helen Dawes, Peter A. Bandettini, Heidi Johansen-Berg
2015	J	`jnl`	Functional subdivision of the human periaqueductal grey in respiratory control using 7 tesla fMRI. NeuroImage Olivia K. Faull, Mark Jenkinson, Stuart Clare, Kyle T. S. Pattinson
2015	J	`jnl`	Large-scale Probabilistic Functional Modes from resting state fMRI. NeuroImage Samuel J. Harrison, Mark W. Woolrich, Emma C. Robinson, Matthew F. Glasser, Christian F. Beckmann, Mark Jenkinson, Stephen M. Smith
2015	J	`jnl`	Quantitative Susceptibility Mapping by Inversion of a Perturbation Field Model: Correlation With Brain Iron in Normal Aging. IEEE Trans. Medical Imaging Clare B. Poynton, Mark Jenkinson, Elfar Adalsteinsson, Edith V. Sullivan, Adolf Pfefferbaum, William M. Wells III
2014	J	`jnl`	Correspondences between retinotopic areas and myelin maps in human visual cortex. NeuroImage Rouhollah O. Abdollahi, Hauke Kolster, Matthew F. Glasser, Emma C. Robinson, Timothy S. Coalson, Donna L. Dierker, Mark Jenkinson, David C. Van Essen, Guy A. Orban
2014	J	`jnl`	Gray matter volume is associated with rate of subsequent skill learning after a long term training intervention. NeuroImage Cassandra Sampaio-Baptista, Jan Scholz, Mark Jenkinson, Adam G. Thomas, Nicola Filippini, Gabrielle Smit, Gwenaëlle Douaud, Heidi Johansen-Berg
2014	J	`jnl`	MSM: A new flexible framework for Multimodal Surface Matching. NeuroImage Emma C. Robinson, Saâd Jbabdi, Matthew F. Glasser, Jesper L. R. Andersson, Gregory C. Burgess, Michael P. Harms, Stephen M. Smith, David C. Van Essen, Mark Jenkinson
2014	J	`jnl`	Optimizing RetroICor and RetroKCor corrections for multi-shot 3D FMRI acquisitions. NeuroImage Rob H. N. Tijssen, Mark Jenkinson, Jonathan C. W. Brooks, Peter Jezzard, Karla L. Miller
2014	J	`jnl`	Optimizing full-brain coverage in human brain MRI through population distributions of brain size. NeuroImage Maarten Mennes, Mark Jenkinson, Romain Valabrègue, Jan K. Buitelaar, Christian F. Beckmann, Stephen M. Smith
2013	J	`jnl`	Advances in diffusion MRI acquisition and processing in the Human Connectome Project. NeuroImage Stamatios N. Sotiropoulos, Saâd Jbabdi, Junqian Xu, Jesper L. R. Andersson, Steen Moeller, Edward J. Auerbach, Matthew F. Glasser, Moisés Hernández, Guillermo Sapiro, Mark Jenkinson, David A. Feinberg, Essa Yacoub, Christophe Lenglet, David C. Van Essen, Kâmil Ugurbil, Timothy Edward John Behrens
2013	—	`conf`	Edge- and Detail-Preserving Sparse Image Representations for Deformable Registration of Chest MRI and CT Volumes. IPMI Mattias P. Heinrich, Mark Jenkinson, Bartlomiej W. Papiez, Fergus V. Gleeson, Michael Brady, Julia A. Schnabel
2013	J	`jnl`	Human Connectome Project informatics: Quality control, database services, and data visualization. NeuroImage Daniel S. Marcus, Michael P. Harms, Abraham Z. Snyder, Mark Jenkinson, J. Anthony Wilson, Matthew F. Glasser, Deanna M. Barch, Kevin A. Archie, Gregory C. Burgess, Mohana Ramaratnam, Michael R. Hodge, William Horton, Rick Herrick, Timothy R. Olsen, Michael McKay, Matthew House, Michael Hileman, Erin Reid, John W. Harwell, Timothy S. Coalson, Jon Schindler, Jennifer Stine Elam, Sandra W. Curtiss, David C. Van Essen
2013	J	`jnl`	MRF-Based Deformable Registration and Ventilation Estimation of Lung CT. IEEE Trans. Medical Imaging Mattias P. Heinrich, Mark Jenkinson, Michael Brady, Julia A. Schnabel
2013	—	`conf`	Multimodal Surface Matching: Fast and Generalisable Cortical Registration Using Discrete Optimisation. IPMI Emma C. Robinson, Saâd Jbabdi, Jesper L. R. Andersson, Stephen M. Smith, Matthew F. Glasser, David C. Van Essen, Gregory C. Burgess, Michael P. Harms, Deanna M. Barch, Mark Jenkinson
2013	—	`conf`	The Impact of Heterogeneity and Uncertainty on Prediction of Response to Therapy Using Dynamic MRI Data. MICCAI (1) Manav Bhushan, Julia A. Schnabel, Michael A. Chappell, Fergus Gleeson, Mark Anderson, Jamie Franklin, Michael Brady, Mark Jenkinson
2013	J	`jnl`	The minimal preprocessing pipelines for the Human Connectome Project. NeuroImage Matthew F. Glasser, Stamatios N. Sotiropoulos, J. Anthony Wilson, Timothy S. Coalson, Bruce Fischl, Jesper L. R. Andersson, Junqian Xu, Saâd Jbabdi, Matthew A. Webster, Jonathan R. Polimeni, David C. Van Essen, Mark Jenkinson
2013	—	`conf`	Towards Realtime Multimodal Fusion for Image-Guided Interventions Using Self-similarities. MICCAI (1) Mattias P. Heinrich, Mark Jenkinson, Bartlomiej W. Papiez, Michael Brady, Julia A. Schnabel
2012	J	`jnl`	Assessment of physiological noise modelling methods for functional imaging of the spinal cord. NeuroImage Yazhuo Kong, Mark Jenkinson, Jesper L. R. Andersson, Irene Tracey, Jonathan C. W. Brooks
2012	J	`jnl`	FSL. NeuroImage Mark Jenkinson, Christian F. Beckmann, Timothy Edward John Behrens, Mark William Woolrich, Stephen M. Smith
2012	—	`conf`	Globally Optimal Deformable Registration on a Minimum Spanning Tree Using Dense Displacement Sampling. MICCAI (3) Mattias P. Heinrich, Mark Jenkinson, Michael Brady, Julia A. Schnabel
2012	J	`jnl`	MIND: Modality independent neighbourhood descriptor for multi-modal deformable registration. Medical Image Anal. Mattias P. Heinrich, Mark Jenkinson, Manav Bhushan, Tahreema N. Matin, Fergus Gleeson, Michael Brady, Julia A. Schnabel
2012	J	`jnl`	Optimizing parameter choice for FSL-Brain Extraction Tool (BET) on 3D T1 images in multiple sclerosis. NeuroImage Veronica Popescu, Marco Battaglini, W. S. Hoogstrate, Sander C. J. Verfaillie, I. C. Sluimer, Ronald A. van Schijndel, Bob W. van Dijk, Keith S. Cover, Dirk L. Knol, Mark Jenkinson, Frederik Barkhof, Nicola De Stefano, Hugo Vrenken
2012	—	`conf`	Textural mutual information based on cluster trees for multimodal deformable registration. ISBI Mattias P. Heinrich, Mark Jenkinson, Michael Brady, Julia A. Schnabel
2011	J	`jnl`	A Bayesian model of shape and appearance for subcortical brain segmentation. NeuroImage Brian Patenaude, Stephen M. Smith, David N. Kennedy, Mark Jenkinson
2011	J	`jnl`	Diffusion imaging of whole, post-mortem human brains on a clinical MRI scanner. NeuroImage Karla L. Miller, Charlotte J. Stagg, Gwenaëlle Douaud, Saâd Jbabdi, Stephen M. Smith, Timothy Edward John Behrens, Mark Jenkinson, Steven A. Chance, Margaret M. Esiri, Natalie L. Voets, Ned Jenkinson, Tipu Z. Aziz, Martin R. Turner, Heidi Johansen-Berg, Jennifer A. McNab
2011	J	`jnl`	Evaluation of Registration Methods on Thoracic CT: The EMPIRE10 Challenge. IEEE Trans. Medical Imaging Keelin Murphy, Bram van Ginneken, Joseph M. Reinhardt, Sven Kabus, Kai Ding, Xiang Deng, Kunlin Cao, Kaifang Du, Gary E. Christensen, Vincent Garcia, Tom Vercauteren, Nicholas Ayache, Olivier Commowick, Grégoire Malandain, Ben Glocker, Nikos Paragios, Nassir Navab, Vladlena Gorbunova, Jon Sporring, Marleen de Bruijne, Xiao Han, Mattias P. Heinrich, Julia A. Schnabel, Mark Jenkinson, Cristian Lorenz, Marc Modat, Jamie McClelland, Sébastien Ourselin, Sascha E. A. Muenzing, Max A. Viergever, Dante De Nigris, D. Louis Collins, Tal Arbel, Marta Peroni, Rui Li, Gregory C. Sharp, Alexander Schmidt-Richberg, Jan Ehrhardt, René Werner, Dirk Smeets, Dirk Loeckx, Gang Song, Nicholas J. Tustison, Brian B. Avants, James C. Gee, Marius Staring, Stefan Klein, Berend C. Stoel, Martin Urschler, Manuel Werlberger, Jef Vandemeulebroucke, Simon Rit, David Sarrut, Josien P. W. Pluim
2011	J	`jnl`	Imaging dopamine receptors in humans with [ NeuroImage Andri C. Tziortzi, Graham E. Searle, Sofia Tzimopoulou, Cristian A. Salinas, John D. Beaver, Mark Jenkinson, Marc Laruelle, Eugenii A. Rabiner, Roger N. Gunn
2011	J	`jnl`	Informatics and Data Mining Tools and Strategies for the Human Connectome Project. Frontiers Neuroinformatics Daniel S. Marcus, John W. Harwell, Timothy R. Olsen, Michael R. Hodge, Matthew F. Glasser, Fred W. Prior, Mark Jenkinson, Timothy O. Laumann, Sandra W. Curtiss, David C. Van Essen
2011	—	`conf`	Motion Correction and Parameter Estimation in dceMRI Sequences: Application to Colorectal Cancer. MICCAI (1) Manav Bhushan, Julia A. Schnabel, Laurent Risser, Mattias P. Heinrich, J. Michael Brady, Mark Jenkinson
2011	—	`conf`	Non-local Shape Descriptor: A New Similarity Metric for Deformable Multi-modal Registration. MICCAI (2) Mattias P. Heinrich, Mark Jenkinson, Manav Bhushan, Tahreema N. Matin, Fergus Gleeson, J. Michael Brady, Julia A. Schnabel
2011	—	`conf`	Non-rigid image registration through efficient discrete optimization. MIUA Mattias P. Heinrich, Mark Jenkinson, J. Michael Brady, Julia A. Schnabel
2011	J	`jnl`	Novel Fast Marching for Automated Segmentation of the Hippocampus (FMASH): Method and validation on clinical data. NeuroImage Courtney A. Bishop, Mark Jenkinson, Jesper L. R. Andersson, Jérôme Declerck, Dorit Merhof
2010	J	`jnl`	A combined diffusion tensor imaging (DTI) and [11C]-(+)-PHNO positron emission tomography (PET) study to quantify dopamine D3/D2 receptors in pallidum. NeuroImage Andri C. Tziortzi, Gwenaëlle Douaud, Paul Shotbolt, Courtney A. Bishop, Graham E. Searle, Marc Laruelle, Eugenii A. Rabiner, Mark Jenkinson, Roger N. Gunn
2010	J	`jnl`	Combining shape and connectivity analysis: An MRI study of thalamic degeneration in Alzheimer's disease. NeuroImage Mojtaba Zarei, Brian Patenaude, Jessica Damoiseaux, Ciro Morgese, Steve M. Smith, Paul M. Matthews, Frederik Barkhof, Serge A. R. B. Rombouts, Ernesto Sanz-Arigita, Mark Jenkinson
2010	J	`jnl`	Corrigendum to "An evaluation of four automatic methods of segmenting the subcortical structures in the brain" [NeuroImage 47 (2009) 1435-1447]. NeuroImage Kolawole Oluwole Babalola, Brian Patenaude, Paul Aljabar, Julia A. Schnabel, David N. Kennedy, William R. Crum, Stephen M. Smith, Timothy F. Cootes, Mark Jenkinson, Daniel Rueckert
2010	J	`jnl`	Corrigendum to "Combining shape and connectivity analysis: An MRI study of thalamic degeneration in Alzheimer's disease" [NeuroImage 49 (2010) 1-8]. NeuroImage Mojtaba Zarei, Brian Patenaude, Jessica Damoiseaux, Ciro Morgese, Steve M. Smith, Paul M. Matthews, Frederik Barkhof, Serge A. R. B. Rombouts, Ernesto Sanz-Arigita, Mark Jenkinson
2010	—	`conf`	Evaluation of Hippocampal Segmentation Methods for Healthy and Pathological Subjects. VCBM Courtney A. Bishop, Mark Jenkinson, Jérôme Declerck, Dorit Merhof
2009	J	`jnl`	An evaluation of four automatic methods of segmenting the subcortical structures in the brain. NeuroImage Kolawole Oluwole Babalola, Brian Patenaude, Paul Aljabar, Julia A. Schnabel, David N. Kennedy, William R. Crum, Stephen M. Smith, Timothy F. Cootes, Mark Jenkinson, Daniel Rueckert
2009	—	`conf`	Atlas-Based Improved Prediction of Magnetic Field Inhomogeneity for Distortion Correction of EPI Data. MICCAI (1) Clare B. Poynton, Mark Jenkinson, William M. Wells III
2009	J	`jnl`	Bayesian analysis of neuroimaging data in FSL. NeuroImage Mark William Woolrich, Saâd Jbabdi, Brian Patenaude, Michael A. Chappell, Salima Makni, Timothy Behrens, Christian F. Beckmann, Mark Jenkinson, Stephen M. Smith
2009	J	`jnl`	Evaluation of 14 nonlinear deformation algorithms applied to human brain MRI registration. NeuroImage Arno Klein, Jesper L. R. Andersson, Babak A. Ardekani, John Ashburner, Brian B. Avants, Ming-Chang Chiang, Gary E. Christensen, D. Louis Collins, James C. Gee, Pierre Hellier, Joo Hyun Song, Mark Jenkinson, Claude Lepage, Daniel Rueckert, Paul M. Thompson, Tom Vercauteren, Roger P. Woods, J. John Mann, Ramin V. Parsey
2009	—	`conf`	Methods for Tractography-Driven Surface Registration of Brain Structures. MICCAI (1) Aleksandar Petrovic, Stephen M. Smith, Ricarda A. Menke, Mark Jenkinson
2008	—	`conf`	Comparison and Evaluation of Segmentation Techniques for Subcortical Structures in Brain MRI. MICCAI (1) Kolawole O. Babalola, Brian Patenaude, Paul Aljabar, Julia A. Schnabel, David N. Kennedy, William R. Crum, Stephen M. Smith, Timothy F. Cootes, Mark Jenkinson, Daniel Rueckert
2008	—	`conf`	Fieldmap-Free Retrospective Registration and Distortion Correction for EPI-Based Functional Imaging. MICCAI (2) Clare B. Poynton, Mark Jenkinson, Stephen Whalen, Alexandra J. Golby, William M. Wells III
2008	J	`jnl`	Physiological noise modelling for spinal functional magnetic resonance imaging studies. NeuroImage Jonathan C. W. Brooks, Christian F. Beckmann, Karla L. Miller, Richard G. Wise, Carlo A. Porro, Irene Tracey, Mark Jenkinson
2007	—	`conf`	A Marginalized MAP Approach and EM Optimization for Pair-Wise Registration. IPMI Lilla Zöllei, Mark Jenkinson, Samson J. Timoner, William M. Wells III
2007	J	`jnl`	Integrating temporal information with a non-rigid method of motion correction for functional magnetic resonance images. Image Vis. Comput. Peter R. Bannister, J. Michael Brady, Mark Jenkinson
2007	J	`jnl`	Longitudinal and cross-sectional analysis of atrophy in Alzheimer's disease: Cross-validation of BSI, SIENA and SIENAX. NeuroImage Stephen M. Smith, Anil Rao, Nicola De Stefano, Mark Jenkinson, Jonathan M. Schott, Paul M. Matthews, Nick C. Fox
2007	J	`jnl`	Meaningful design and contrast estimability in FMRI. NeuroImage Stephen M. Smith, Mark Jenkinson, Christian F. Beckmann, Karla L. Miller, Mark W. Woolrich
2006	—	`conf`	A Bayesian Cost Function Applied to Model-Based Registration of Sub-cortical Brain Structures. WBIR Brian Patenaude, Stephen M. Smith, Mark Jenkinson
2006	J	`jnl`	A consistent relationship between local white matter architecture and functional specialisation in medial frontal cortex. NeuroImage T. E. J. Behrens, Mark Jenkinson, Matthew D. Robson, Stephen M. Smith, Heidi Johansen-Berg
2006	—	`conf`	Comparing the Similarity of Statistical Shape Models Using the Bhattacharya Metric. MICCAI (1) Kolawole O. Babalola, Timothy F. Cootes, Brian Patenaude, Anil Rao, Mark Jenkinson
2006	J	`jnl`	Tract-based spatial statistics: Voxelwise analysis of multi-subject diffusion data. NeuroImage Stephen M. Smith, Mark Jenkinson, Heidi Johansen-Berg, Daniel Rueckert, Thomas E. Nichols, Clare E. Mackay, Kate E. Watkins, Olga Ciccarelli, M. Zaheer Cader, Paul M. Matthews, Timothy Edward John Behrens
2005	A	`conf`	Generalised Overlap Measures for Assessment of Pairwise and Groupwise Image Registration and Segmentation. MICCAI William R. Crum, Oscar Camara, Daniel Rueckert, Kanwal K. Bhatia, Mark Jenkinson, Derek L. G. Hill
2004	—	`conf`	A Framework for Detailed Objective Comparison of Non-rigid Registration Algorithms in Neuroimaging. MICCAI (1) William R. Crum, Daniel Rueckert, Mark Jenkinson, David N. Kennedy, Stephen M. Smith
2004	J	`jnl`	Fully Bayesian spatio-temporal modeling of FMRI data. IEEE Trans. Medical Imaging Mark William Woolrich, Mark Jenkinson, J. Michael Brady, Stephen M. Smith
2004	J	`jnl`	Multilevel linear modelling for FMRI group analysis using Bayesian inference. NeuroImage Mark W. Woolrich, Timothy Edward John Behrens, Christian F. Beckmann, Mark Jenkinson, Stephen M. Smith
2004	—	`conf`	Non-Rigid Motion Estimation and Spatio-Temporal Realignment in FMRI. CVPR Workshops Peter R. Bannister, J. Michael Brady, Mark Jenkinson
2004	—	`conf`	Reducing Activation-Related Bias in FMRI Registration. MIAR Luis Freire, Jeff Orchard, Mark Jenkinson, Jean-François Mangin
2004	—	`conf`	TIGER - A New Model for Spatio-temporal Realignment of FMRI Data. ECCV Workshops CVAMIA and MMBIA Peter R. Bannister, Michael Brady, Mark Jenkinson
2003	—	`conf`	A Gradient-Informed Robust Motion Correction Method for FMRI. WBIR Luis Freire, Mark Jenkinson
2003	J	`jnl`	General multilevel linear modeling for group analysis in FMRI. NeuroImage Christian F. Beckmann, Mark Jenkinson, Stephen M. Smith
2003	J	`jnl`	Protocol to determine the optimal intraoral passive shim for minimisation of susceptibility artifact in human inferior frontal cortex. NeuroImage James L. Wilson, Mark Jenkinson, Peter Jezzard
2002	J	`jnl`	A saliency-based hierarchy for local symmetries. Image Vis. Comput. Mark Jenkinson, Michael Brady
2002	J	`jnl`	Accurate, Robust, and Automated Longitudinal and Cross-Sectional Brain Change Analysis. NeuroImage Stephen M. Smith, Yongyue Zhang, Mark Jenkinson, Jacqueline Chen, Paul M. Matthews, Antonio Federico, Nicola De Stefano
2002	J	`jnl`	Fast, Fully Automated Global and Local Magnetic Field Optimization for fMRI of the Human Brain. NeuroImage James L. Wilson, Mark Jenkinson, Ivan E. Tavares de Araújo, Morten L. Kringelbach, Edmund T. Rolls, Peter Jezzard
2002	J	`jnl`	Improved Optimization for the Robust and Accurate Linear Registration and Motion Correction of Brain Images. NeuroImage Mark Jenkinson, Peter R. Bannister, Michael Brady, Stephen M. Smith
2001	J	`jnl`	A global optimisation method for robust affine registration of brain images. Medical Image Anal. Mark Jenkinson, Stephen M. Smith
1999	A	`conf`	Accurate Robust Symmetry Estimation. MICCAI Stephen M. Smith, Mark Jenkinson
1998	—	`conf`	Feature Saliency from Noise Variations in Invariants. ACCV (2) Mark Jenkinson, Michael Brady