Mark Emberton

50 papers Journal 34Unranked 16
YearRankTypeTitle / Venue / Authors
2026 J jnl
Deep EM with Hierarchical Latent Label Modelling for Multi-Site Prostate Lesion Segmentation.
CoRR
Wen Yan, Yipei Wang, Shiqi Huang, Natasha Thorley, Mark Emberton, Vasilis Stavrinides, Yipeng Hu, Dean C. Barratt
2026 J jnl
On the Degrees of Freedom of Gridded Control Points in Learning-Based Medical Image Registration.
CoRR
Wen Yan, Qianye Yang, Yipei Wang, Shonit Punwani, Mark Emberton, Vasilis Stavrinides, Yipeng Hu, Dean C. Barratt
2026 J jnl
ProFound: A moderate-sized vision foundation model for multi-task prostate imaging.
CoRR
Yipei Wang, Yinsong Xu, Weixi Yi, Shaheer Ullah Saeed, Natasha Thorley, Alexander Ng, Yukun Zhou, Wen Yan, Dean C. Barratt, Shonit Punwani, Veeru Kasivisvanathan, Mark Emberton, Daniel C. Alexander, Yipeng Hu
2026 J jnl
Understanding the Transfer Limits of Vision Foundation Models.
CoRR
Shiqi Huang, Yipei Wang, Natasha Thorley, Alexander Ng, Shaheer U. Saeed, Mark Emberton, Shonit Punwani, Veeru Kasivisvanathan, Dean C. Barratt, Daniel C. Alexander, Yipeng Hu
2025 — conf
Tell2Reg: Establishing Spatial Correspondence between Images by the Same Language Prompts.
ISBI
Wen Yan, Qianye Yang, Shiqi Huang, Yipei Wang, Shonit Punwani, Mark Emberton, Vasilis Stavrinides, Yipeng Hu, Dean C. Barratt
2025 J jnl
Tell2Reg: Establishing spatial correspondence between images by the same language prompts.
CoRR
Wen Yan, Qianye Yang, Shiqi Huang, Yipei Wang, Shonit Punwani, Mark Emberton, Vasilis Stavrinides, Yipeng Hu, Dean C. Barratt
2024 — conf
Biomechanics-Informed Non-rigid Medical Image Registration and its Inverse Material Property Estimation with Linear and Nonlinear Elasticity.
MICCAI (2)
Zhe Min, Zachary M. C. Baum, Shaheer U. Saeed, Mark Emberton, Dean C. Barratt, Zeike A. Taylor, Yipeng Hu
2024 J jnl
Biomechanics-informed Non-rigid Medical Image Registration and its Inverse Material Property Estimation with Linear and Nonlinear Elasticity.
CoRR
Zhe Min, Zachary M. C. Baum, Shaheer U. Saeed, Mark Emberton, Dean C. Barratt, Zeike A. Taylor, Yipeng Hu
2024 J jnl
Combiner and HyperCombiner networks: Rules to combine multimodality MR images for prostate cancer localisation.
Medical Image Anal.
Wen Yan, Bernard Chiu, Ziyi Shen, Qianye Yang, Tom Syer, Zhe Min, Shonit Punwani, Mark Emberton, David Atkinson, Dean C. Barratt, Yipeng Hu
2024 J jnl
Semi-weakly-supervised neural network training for medical image registration.
CoRR
Yiwen Li, Yunguan Fu, Iani J. M. B. Gayo, Qianye Yang, Zhe Min, Shaheer U. Saeed, Wen Yan, Yipei Wang, J. Alison Noble, Mark Emberton, Matthew J. Clarkson, Dean C. Barratt, Victor Adrian Prisacariu, Yipeng Hu
2024 — conf
Weakly Supervised Localisation of Prostate Cancer Using Reinforcement Learning for Bi-Parametric MR Images.
ISBI
Martynas Pocius, Wen Yan, Dean C. Barratt, Mark Emberton, Matthew J. Clarkson, Yipeng Hu, Shaheer U. Saeed
2024 J jnl
Weakly supervised localisation of prostate cancer using reinforcement learning for bi-parametric MR images.
CoRR
Martynas Pocius, Wen Yan, Dean C. Barratt, Mark Emberton, Matthew J. Clarkson, Yipeng Hu, Shaheer U. Saeed
2023 J jnl
A hybrid CNN-RNN approach for survival analysis in a Lung Cancer Screening study.
CoRR
Yaozhi Lu, Shahab Aslani, An Zhao, Ahmed H. Shahin, David Barber, Mark Emberton, Daniel C. Alexander, Joseph Jacob
2023 — conf
Bi-parametric prostate MR image synthesis using pathology and sequence-conditioned stable diffusion.
MIDL
Shaheer U. Saeed, Tom Syer, Wen Yan, Qianye Yang, Mark Emberton, Shonit Punwani, Matthew John Clarkson, Dean C. Barratt, Yipeng Hu
2023 J jnl
Bi-parametric prostate MR image synthesis using pathology and sequence-conditioned stable diffusion.
CoRR
Shaheer U. Saeed, Tom Syer, Wen Yan, Qianye Yang, Mark Emberton, Shonit Punwani, Matthew J. Clarkson, Dean C. Barratt, Yipeng Hu
2023 J jnl
Combiner and HyperCombiner Networks: Rules to Combine Multimodality MR Images for Prostate Cancer Localisation.
CoRR
Wen Yan, Bernard Chiu, Ziyi Shen, Qianye Yang, Tom Syer, Zhe Min, Shonit Punwani, Mark Emberton, David Atkinson, Dean C. Barratt, Yipeng Hu
2023 — conf
Non-rigid Medical Image Registration using Physics-informed Neural Networks.
IPMI
Zhe Min, Zachary M. C. Baum, Shaheer U. Saeed, Mark Emberton, Dean C. Barratt, Zeike A. Taylor, Yipeng Hu
2023 J jnl
Non-rigid Medical Image Registration using Physics-informed Neural Networks.
CoRR
Zhe Min, Zachary M. C. Baum, Shaheer U. Saeed, Mark Emberton, Dean C. Barratt, Zeike A. Taylor, Yipeng Hu
2023 J jnl
Prototypical few-shot segmentation for cross-institution male pelvic structures with spatial registration.
Medical Image Anal.
Yiwen Li, Yunguan Fu, Iani J. M. B. Gayo, Qianye Yang, Zhe Min, Shaheer U. Saeed, Wen Yan, Yipei Wang, J. Alison Noble, Mark Emberton, Matthew J. Clarkson, Henkjan Huisman, Dean C. Barratt, Victor Adrian Prisacariu, Yipeng Hu
2022 J jnl
Deep Learning-Based Long Term Mortality Prediction in the National Lung Screening Trial.
IEEE Access
Yaozhi Lu, Shahab Aslani, Mark Emberton, Daniel C. Alexander, Joseph Jacob
2022 J jnl
Image quality assessment by overlapping task-specific and task-agnostic measures: application to prostate multiparametric MR images for cancer segmentation.
CoRR
Shaheer U. Saeed, Wen Yan, Yunguan Fu, Francesco Giganti, Qianye Yang, Zachary M. C. Baum, Mirabela Rusu, Richard E. Fan, Geoffrey A. Sonn, Mark Emberton, Dean C. Barratt, Yipeng Hu
2022 J jnl
Prototypical few-shot segmentation for cross-institution male pelvic structures with spatial registration.
CoRR
Yiwen Li, Yunguan Fu, Iani J. M. B. Gayo, Qianye Yang, Zhe Min, Shaheer U. Saeed, Wen Yan, Yipei Wang, J. Alison Noble, Mark Emberton, Matthew J. Clarkson, Henkjan J. Huisman, Dean C. Barratt, Victor Adrian Prisacariu, Yipeng Hu
2022 — conf
The Impact of Using Voxel-Level Segmentation Metrics on Evaluating Multifocal Prostate Cancer Localisation.
AMAI@MICCAI
Wen Yan, Qianye Yang, Tom Syer, Zhe Min, Shonit Punwani, Mark Emberton, Dean C. Barratt, Bernard Chiu, Yipeng Hu
2022 J jnl
The impact of using voxel-level segmentation metrics on evaluating multifocal prostate cancer localisation.
CoRR
Wen Yan, Qianye Yang, Tom Syer, Zhe Min, Shonit Punwani, Mark Emberton, Dean C. Barratt, Bernard Chiu, Yipeng Hu
2021 J jnl
Computer-aided diagnosis of prostate cancer using multiparametric MRI and clinical features: A patient-level classification framework.
Medical Image Anal.
Pritesh Mehta, Michela Antonelli, Hashim Uddin Ahmed, Mark Emberton, Shonit Punwani, Sébastien Ourselin
2021 J jnl
The ReIMAGINE Multimodal Warehouse: Using Artificial Intelligence for Accurate Risk Stratification of Prostate Cancer.
Frontiers Artif. Intell.
Aida Santaolalla, Tim Hulsen, Jenson Davis, Hashim Uddin Ahmed, Caroline M. Moore, Shonit Punwani, Gert Attard, Neil McCartan, Mark Emberton, Anthony Coolen, Mieke Van Hemelrijck
2020 — conf
Decision fusion of 3D convolutional neural networks to triage patients with suspected prostate cancer using volumetric biparametric MRI.
Computer-Aided Diagnosis
Pritesh Mehta, Michela Antonelli, Hashim Uddin Ahmed, Mark Emberton, Shonit Punwani, Sébastien Ourselin
2020 — conf
Prostate Motion Modelling Using Biomechanically-Trained Deep Neural Networks on Unstructured Nodes.
MICCAI (4)
Shaheer U. Saeed, Zeike A. Taylor, Mark A. Pinnock, Mark Emberton, Dean C. Barratt, Yipeng Hu
2020 J jnl
Prostate motion modelling using biomechanically-trained deep neural networks on unstructured nodes.
CoRR
Shaheer U. Saeed, Zeike A. Taylor, Mark A. Pinnock, Mark Emberton, Dean C. Barratt, Yipeng Hu
2019 J jnl
Automatic segmentation of prostate MRI using convolutional neural networks: Investigating the impact of network architecture on the accuracy of volume measurement and MRI-ultrasound registration.
Medical Image Anal.
Nooshin Ghavami, Yipeng Hu, Eli Gibson, Ester Bonmati, Mark Emberton, Caroline M. Moore, Dean C. Barratt
2019 — conf
Conditional Segmentation in Lieu of Image Registration.
MICCAI (2)
Yipeng Hu, Eli Gibson, Dean C. Barratt, Mark Emberton, J. Alison Noble, Tom Vercauteren
2019 J jnl
Conditional Segmentation in Lieu of Image Registration.
CoRR
Yipeng Hu, Eli Gibson, Dean C. Barratt, Mark Emberton, J. Alison Noble, Tom Vercauteren
2018 — conf
Adversarial Deformation Regularization for Training Image Registration Neural Networks.
MICCAI (1)
Yipeng Hu, Eli Gibson, Nooshin Ghavami, Ester Bonmati, Caroline M. Moore, Mark Emberton, Tom Vercauteren, J. Alison Noble, Dean C. Barratt
2018 J jnl
Adversarial Deformation Regularization for Training Image Registration Neural Networks.
CoRR
Yipeng Hu, Eli Gibson, Nooshin Ghavami, Ester Bonmati, Caroline M. Moore, Mark Emberton, Tom Vercauteren, J. Alison Noble, Dean C. Barratt
2018 — conf
Inter-site Variability in Prostate Segmentation Accuracy Using Deep Learning.
MICCAI (4)
Eli Gibson, Yipeng Hu, Nooshin Ghavami, Hashim Uddin Ahmed, Caroline M. Moore, Mark Emberton, Henkjan J. Huisman, Dean C. Barratt
2018 — conf
Label-driven weakly-supervised learning for multimodal deformarle image registration.
ISBI
Yipeng Hu, Marc Modat, Eli Gibson, Nooshin Ghavami, Ester Bonmati, Caroline M. Moore, Mark Emberton, J. Alison Noble, Dean C. Barratt, Tom Vercauteren
2018 J jnl
Weakly-Supervised Convolutional Neural Networks for Multimodal Image Registration.
CoRR
Yipeng Hu, Marc Modat, Eli Gibson, Wenqi Li, Nooshin Ghavami, Ester Bonmati, Guotai Wang, Steven Bandula, Caroline M. Moore, Mark Emberton, Sébastien Ourselin, J. Alison Noble, Dean C. Barratt, Tom Vercauteren
2018 J jnl
Weakly-supervised convolutional neural networks for multimodal image registration.
Medical Image Anal.
Yipeng Hu, Marc Modat, Eli Gibson, Wenqi Li, Nooshin Ghavami, Ester Bonmati, Guotai Wang, Steven Bandula, Caroline M. Moore, Mark Emberton, Sébastien Ourselin, J. Alison Noble, Dean C. Barratt, Tom Vercauteren
2017 J jnl
A comparison of Bayesian and non-linear regression methods for robust estimation of pharmacokinetics in DCE-MRI and how it affects cancer diagnosis.
Comput. Medical Imaging Graph.
Nikolaos Dikaios, David Atkinson, Chiara Tudisca, Pierpaolo Purpura, Martin Forster, Hashim Uddin Ahmed, Timothy Beale, Mark Emberton, Shonit Punwani
2017 J jnl
Development and Phantom Validation of a 3-D-Ultrasound-Guided System for Targeting MRI-Visible Lesions During Transrectal Prostate Biopsy.
IEEE Trans. Biomed. Eng.
Yipeng Hu, Veeru Kasivisvanathan, Lucy A. M. Simmons, Matthew J. Clarkson, Stephen A. Thompson, Taimur T. Shah, Hashim Uddin Ahmed, Shonit Punwani, David J. Hawkes, Mark Emberton, Caroline M. Moore, Dean C. Barratt
2017 — conf
Intraoperative Organ Motion Models with an Ensemble of Conditional Generative Adversarial Networks.
MICCAI (2)
Yipeng Hu, Eli Gibson, Tom Vercauteren, Hashim Uddin Ahmed, Mark Emberton, Caroline M. Moore, J. Alison Noble, Dean C. Barratt
2017 J jnl
Intraoperative Organ Motion Models with an Ensemble of Conditional Generative Adversarial Networks.
CoRR
Yipeng Hu, Eli Gibson, Tom Vercauteren, Hashim Uddin Ahmed, Mark Emberton, Caroline M. Moore, J. Alison Noble, Dean C. Barratt
2017 J jnl
Label-driven weakly-supervised learning for multimodal deformable image registration.
CoRR
Yipeng Hu, Marc Modat, Eli Gibson, Nooshin Ghavami, Ester Bonmati, Caroline M. Moore, Mark Emberton, J. Alison Noble, Dean C. Barratt, Tom Vercauteren
2016 J jnl
From computer-assisted intervention research to clinical impact: The need for a holistic approach.
Medical Image Anal.
Sébastien Ourselin, Mark Emberton, Tom Vercauteren
2015 J jnl
Population-based prediction of subject-specific prostate deformation for MR-to-ultrasound image registration.
Medical Image Anal.
Yipeng Hu, Eli Gibson, Hashim Uddin Ahmed, Caroline M. Moore, Mark Emberton, Dean C. Barratt
2012 J jnl
MR to ultrasound registration for image-guided prostate interventions.
Medical Image Anal.
Yipeng Hu, Hashim Uddin Ahmed, Zeike A. Taylor, Clare Allen, Mark Emberton, David J. Hawkes, Dean C. Barratt
2011 J jnl
Modelling Prostate Motion for Data Fusion During Image-Guided Interventions.
IEEE Trans. Medical Imaging
Yipeng Hu, Timothy J. Carter, Hashim Uddin Ahmed, Mark Emberton, Clare Allen, David J. Hawkes, Dean C. Barratt
2009 — conf
MR to Ultrasound Image Registration for Guiding Prostate Biopsy and Interventions.
MICCAI (1)
Yipeng Hu, Hashim Uddin Ahmed, Clare Allen, Doug Pendsé, Mahua Sahu, Mark Emberton, David J. Hawkes, Dean C. Barratt
2008 — conf
A Statistical Motion Model Based on Biomechanical Simulations for Data Fusion during Image-Guided Prostate Interventions.
MICCAI (1)
Yipeng Hu, Dominic Morgan, Hashim Uddin Ahmed, Doug Pendsé, Mahua Sahu, Clare Allen, Mark Emberton, David J. Hawkes, Dean C. Barratt
2008 — conf
Modelling Prostate Gland Motion for Image-Guided Interventions.
ISBMS
Yipeng Hu, Dominic Morgan, Hashim Uddin Ahmed, Doug Pendsé, Mahua Sahu, Clare Allen, Mark Emberton, David J. Hawkes, Dean C. Barratt