Mark D. M. Leiserson

25 papers B 6C 1Misc 3Journal 12Unranked 2
YearRankTypeTitle / Venue / Authors
2023 J jnl
A mutation-level covariate model for mutational signatures.
PLoS Comput. Biol.
Itay Kahane, Mark D. M. Leiserson, Roded Sharan
2022 J jnl
ScalpelSig Designs Targeted Genomic Panels from Data to Detect Activity of Mutational Signatures.
J. Comput. Biol.
Nicholas Franzese, Jason Fan, Roded Sharan, Mark D. M. Leiserson
2021 J jnl
A data-driven approach for constructing mutation categories for mutational signature analysis.
PLoS Comput. Biol.
Gal Gilad, Mark D. M. Leiserson, Roded Sharan
2020 B conf
A Mixture Model for Signature Discovery from Sparse Mutation Data.
RECOMB
Itay Sason, Yuexi Chen, Mark D. M. Leiserson, Roded Sharan
2020 Misc conf
DNA Repair Footprint Uncovers Contribution of DNA Repair Mechanism to MutationalSignatures.
PSB
Damian Wójtowicz, Mark D. M. Leiserson, Roded Sharan, Teresa M. Przytycka
2020 J jnl
Matrix (factorization) reloaded: flexible methods for imputing genetic interactions with cross-species and side information.
Bioinform.
Jason Fan, Xuan Cindy Li, Mark Crovella, Mark D. M. Leiserson
2020 Misc conf
PhySigs: Phylogenetic Inference of Mutational Signature Dynamics.
PSB
Sarah A. Christensen, Mark D. M. Leiserson, Mohammed El-Kebir
2020 Misc conf
Session Introduction.
PSB
Mark D. M. Leiserson, Teresa M. Przytycka, Roded Sharan
2019 B conf
A Sticky Multinomial Mixture Model of Strand-Coordinated Mutational Processes in Cancer.
RECOMB
Itay Sason, Damian Wójtowicz, Welles Robinson, Mark D. M. Leiserson, Teresa M. Przytycka, Roded Sharan
2019 J jnl
Modeling clinical and molecular covariates of mutational process activity in cancer.
Bioinform.
Welles Robinson, Roded Sharan, Mark D. M. Leiserson
2019 C conf
What are the Biases in My Word Embedding?
AIES
Nathaniel Swinger, Maria De-Arteaga, Neil Thomas Heffernan IV, Mark D. M. Leiserson, Adam Tauman Kalai
2018 B conf
A Multi-species Functional Embedding Integrating Sequence and Network Structure.
RECOMB
Mark D. M. Leiserson, Jason Fan, Anthony Cannistra, Inbar Fried, Tim Lim, Thomas Schaffner, Mark Crovella, Benjamin J. Hescott
2018 — conf
Decoupled Classifiers for Group-Fair and Efficient Machine Learning.
FAT
Cynthia Dwork, Nicole Immorlica, Adam Tauman Kalai, Mark D. M. Leiserson
2018 J jnl
Hierarchical HotNet: identifying hierarchies of altered subnetworks.
Bioinform.
Matthew A. Reyna, Mark D. M. Leiserson, Benjamin J. Raphael
2018 J jnl
What are the biases in my word embedding?
CoRR
Nathaniel Swinger, Maria De-Arteaga, Neil Thomas Heffernan IV, Mark D. M. Leiserson, Adam Tauman Kalai
2016 J jnl
A weighted exact test for mutually exclusive mutations in cancer.
Bioinform.
Mark D. M. Leiserson, Matthew A. Reyna, Benjamin J. Raphael
2016 — —
Methods for Identifying Combinations of Driver Mutations in Cancer.
Mark D. M. Leiserson
2015 B conf
CoMEt: A Statistical Approach to Identify Combinations of Mutually Exclusive Alterations in Cancer.
RECOMB
Mark D. M. Leiserson, Hsin-Ta Wu, Fabio Vandin, Benjamin J. Raphael
2013 J jnl
Genecentric: a package to uncover graph-theoretic structure in high-throughput epistasis data.
BMC Bioinform.
Andrew Gallant, Mark D. M. Leiserson, Maxim Kachalov, Lenore J. Cowen, Benjamin J. Hescott
2013 J jnl
Simultaneous Identification of Multiple Driver Pathways in Cancer.
PLoS Comput. Biol.
Mark D. M. Leiserson, Dima Blokh, Roded Sharan, Benjamin J. Raphael
2012 — conf
Genecentric: a package to uncover graph-theoretic structure in high-throughput epistasis data.
BCB
Andrew Gallant, Mark D. M. Leiserson, Maxim Kachalov, Lenore J. Cowen, Benjamin J. Hescott
2011 B conf
Inferring Mechanisms of Compensation from E-MAP and SGA Data Using Local Search Algorithms for Max Cut.
RECOMB
Mark D. M. Leiserson, Diana Tatar, Lenore J. Cowen, Benjamin J. Hescott
2011 J jnl
Inferring Mechanisms of Compensation from E-MAP and SGA Data Using Local Search Algorithms for Max Cut.
J. Comput. Biol.
Mark D. M. Leiserson, Diana Tatar, Lenore J. Cowen, Benjamin J. Hescott
2010 J jnl
Evaluating Between-Pathway Models with Expression Data.
J. Comput. Biol.
Benjamin J. Hescott, Mark D. M. Leiserson, Lenore J. Cowen, Donna K. Slonim
2009 B conf
Evaluating Between-Pathway Models with Expression Data.
RECOMB
Benjamin J. Hescott, Mark D. M. Leiserson, Lenore Cowen, Donna K. Slonim