Marja-Leena Linne

31 papers Journal 25Unranked 6

Year	Rank	Type	Title / Venue / Authors
2025	J	`jnl`	Modeling neuron-astrocyte interactions in neural networks using distributed simulation. PLoS Comput. Biol. Han-Jia Jiang, Jugoslava Acimovic, Tiina Manninen, Iiro Ahokainen, Jonas Stapmanns, Mikko Lehtimäki, Markus Diesmann, Sacha J. van Albada, Hans Ekkehard Plesser, Marja-Leena Linne
2024	J	`jnl`	Accelerating Neural ODEs Using Model Order Reduction. IEEE Trans. Neural Networks Learn. Syst. Mikko Lehtimäki, Lassi Paunonen, Marja-Leena Linne
2023	J	`jnl`	Analysis of Network Models with Neuron-Astrocyte Interactions. Neuroinformatics Tiina Manninen, Jugoslava Acimovic, Marja-Leena Linne
2021	J	`jnl`	Accelerating Neural ODEs Using Model Order Reduction. CoRR Mikko Lehtimäki, Lassi Paunonen, Marja-Leena Linne
2020	—	`conf`	Accelerated Simulation of a Neuronal Population via Mathematical Model Order Reduction. AICAS Mikko Lehtimäki, Ippa Seppälä, Lassi Paunonen, Marja-Leena Linne
2020	J	`jnl`	Astrocyte-mediated spike-timing-dependent long-term depression modulates synaptic properties in the developing cortex. PLoS Comput. Biol. Tiina Manninen, Ausra Saudargiene, Marja-Leena Linne
2019	—	`conf`	Projection-based order reduction of a nonlinear biophysical neuronal network model. CDC Mikko Lehtimäki, Lassi Paunonen, Marja-Leena Linne
2018	J	`jnl`	Challenges in Reproducibility, Replicability, and Comparability of Computational Models and Tools for Neuronal and Glial Networks, Cells, and Subcellular Structures. Frontiers Neuroinformatics Tiina Manninen, Jugoslava Acimovic, Riikka Havela, Heidi Teppola, Marja-Leena Linne
2018	J	`jnl`	Computational Models for Calcium-Mediated Astrocyte Functions. Frontiers Comput. Neurosci. Tiina Manninen, Riikka Havela, Marja-Leena Linne
2017	—	`conf`	Modeling Neuron-Astrocyte Interactions: Towards Understanding Synaptic Plasticity and Learning in the Brain. ICIC (2) Riikka Havela, Tiina Manninen, Ausra Saudargiene, Marja-Leena Linne
2017	J	`jnl`	Reproducibility and Comparability of Computational Models for Astrocyte Calcium Excitability. Frontiers Neuroinformatics Tiina Manninen, Riikka Havela, Marja-Leena Linne
2011	J	`jnl`	Computational study of noise in a large signal transduction network. BMC Bioinform. Jukka Intosalmi, Tiina Manninen, Keijo Ruohonen, Marja-Leena Linne
2011	J	`jnl`	Information Diversity in Structure and Dynamics of Simulated Neuronal Networks. Frontiers Comput. Neurosci. Tuomo Mäki-Marttunen, Jugoslava Acimovic, Matti Nykter, Juha Kesseli, Keijo Ruohonen, Olli Yli-Harja, Marja-Leena Linne
2011	J	`jnl`	Modeling Signal Transduction Leading to Synaptic Plasticity: Evaluation and Comparison of Five Models. EURASIP J. Bioinform. Syst. Biol. Tiina Manninen, Katri Hituri, Eeva Toivari, Marja-Leena Linne
2011	J	`jnl`	Modeling of Neuronal Growth EURASIP J. Bioinform. Syst. Biol. Jugoslava Acimovic, Tuomo Mäki-Marttunen, Riikka Havela, Heidi Teppola, Marja-Leena Linne
2010	J	`jnl`	Postsynaptic Signal Transduction Models for Long-Term Potentiation and Depression. Frontiers Comput. Neurosci. Tiina Manninen, Katri Hituri, Jeanette Hellgren Kotaleski, Kim T. Blackwell, Marja-Leena Linne
2008	J	`jnl`	Stochastic Differential Equation Model for Cerebellar Granule Cell Excitability. PLoS Comput. Biol. Antti Saarinen, Marja-Leena Linne, Olli Yli-Harja
2007	J	`jnl`	Computational Methods for Estimation of Cell Cycle Phase Distributions of Yeast Cells. EURASIP J. Bioinform. Syst. Biol. Antti Niemistö, Matti Nykter, Tommi Aho, Henna Jalovaara, Kalle Marjanen, Miika Ahdesmäki, Pekka Ruusuvuori, Mikko Tiainen, Marja-Leena Linne, Olli Yli-Harja
2006	J	`jnl`	A novel approach to model neuronal signal transduction using stochastic differential equations. Neurocomputing Tiina Manninen, Marja-Leena Linne, Keijo Ruohonen
2006	J	`jnl`	Comparison of automated parameter estimation methods for neuronal signaling networks. Neurocomputing Antti Pettinen, Olli Yli-Harja, Marja-Leena Linne
2006	J	`jnl`	Developing Itô stochastic differential equation models for neuronal signal transduction pathways. Comput. Biol. Chem. Tiina Manninen, Marja-Leena Linne, Keijo Ruohonen
2006	—	`conf`	Discrete stochastic simulation of cell signaling: comparison of computational tools. EMBC Tiina Manninen, Eeva Makiraatikka, Antti Ylipää, Antti Pettinen, Kalle Leinonen, Marja-Leena Linne
2006	J	`jnl`	Modeling single neuron behavior using stochastic differential equations. Neurocomputing Antti Saarinen, Marja-Leena Linne, Olli Yli-Harja
2006	J	`jnl`	Properties and roles of BK Neurocomputing Marja-Leena Linne, Tuula O. Jalonen
2005	J	`jnl`	Simulation tools for biochemical networks: evaluation of performance and usability. Bioinform. Antti Pettinen, Tommi Aho, Olli-Pekka Smolander, Tiina Manninen, Antti Saarinen, Kaisa-Leena Taattola, Olli Yli-Harja, Marja-Leena Linne
2004	J	`jnl`	A model integrating the cerebellar granule neuron excitability and calcium signaling pathways. Neurocomputing Marja-Leena Linne, Tiina Manninen, Tuula O. Jalonen
2003	J	`jnl`	Estimation and inversion of the effects of cell population asynchrony in gene expression time-series. Signal Process. Harri Lähdesmäki, Heikki Huttunen, Tommi Aho, Marja-Leena Linne, Jari Niemi, Juha Kesseli, Ronald K. Pearson, Olli Yli-Harja
2003	—	`conf`	Estimation of population effects in synchronized budding yeast experiments. Image Processing: Algorithms and Systems Antti Niemistö, Tommi Aho, Henna Thesleff, Mikko Tiainen, Kalle Marjanen, Marja-Leena Linne, Olli Yli-Harja
2003	J	`jnl`	Simulations of the cultured granule neuron excitability. Neurocomputing Marja-Leena Linne, Tuula O. Jalonen
2000	—	`conf`	Mathematical model of a small neuron. EUSIPCO Marja-Leena Linne, Tuula O. Jahnen
1996	J	`jnl`	Simultaneous Detection of Action Potential Current Waveforms and Single Ion Channel Openings in Rat Cerebellar Granule Cells. Int. J. Neural Syst. Marja-Leena Linne, S. S. Oja, Tuula O. Jalonen