Mariusz Popenda

15 papers C 1Journal 14
YearRankTypeTitle / Venue / Authors
2022 J jnl
RNAspider: a webserver to analyze entanglements in RNA 3D structures.
Nucleic Acids Res.
Kamil Luwanski, Vladyslav Hlushchenko, Mariusz Popenda, Tomasz Zok, Joanna Sarzynska, Daniil Martsich, Marta Szachniuk, Maciej Antczak
2020 J jnl
ElTetrado: a tool for identification and classification of tetrads and quadruplexes.
BMC Bioinform.
Tomasz Zok, Mariusz Popenda, Marta Szachniuk
2020 J jnl
New models and algorithms for RNA pseudoknot order assignment.
Int. J. Appl. Math. Comput. Sci.
Tomasz Zok, Jan Badura, Sylwester Swat, Kacper Figurski, Mariusz Popenda, Maciej Antczak
2020 J jnl
Topology-based classification of tetrads and quadruplex structures.
Bioinform.
Mariusz Popenda, Joanna Miskiewicz, Joanna Sarzynska, Tomasz Zok, Marta Szachniuk
2018 J jnl
New algorithms to represent complex pseudoknotted RNA structures in dot-bracket notation.
Bioinform.
Maciej Antczak, Mariusz Popenda, Tomasz Zok, Michal Zurkowski, Ryszard W. Adamiak, Marta Szachniuk
2018 J jnl
RNAfitme: a webserver for modeling nucleobase and nucleoside residue conformation in fixed-backbone RNA structures.
BMC Bioinform.
Maciej Antczak, Tomasz Zok, Maciej Osowiecki, Mariusz Popenda, Ryszard W. Adamiak, Marta Szachniuk
2018 J jnl
RNApdbee 2.0: multifunctional tool for RNA structure annotation.
Nucleic Acids Res.
Tomasz Zok, Maciej Antczak, Michal Zurkowski, Mariusz Popenda, Jacek Blazewicz, Ryszard W. Adamiak, Marta Szachniuk
2015 J jnl
New in silico approach to assessing RNA secondary structures with non-canonical base pairs.
BMC Bioinform.
Agnieszka Rybarczyk, Natalia Szostak, Maciej Antczak, Tomasz Zok, Mariusz Popenda, Ryszard W. Adamiak, Jacek Blazewicz, Marta Szachniuk
2015 J jnl
RNAssess - a web server for quality assessment of RNA 3D structures.
Nucleic Acids Res.
Piotr Lukasiak, Maciej Antczak, Tomasz Ratajczak, Marta Szachniuk, Mariusz Popenda, Ryszard W. Adamiak, Jacek Blazewicz
2014 J jnl
MCQ4Structures to compute similarity of molecule structures.
Central Eur. J. Oper. Res.
Tomasz Zok, Mariusz Popenda, Marta Szachniuk
2014 J jnl
RNApdbee - a webserver to derive secondary structures from pdb files of knotted and unknotted RNAs.
Nucleic Acids Res.
Maciej Antczak, Tomasz Zok, Mariusz Popenda, Piotr Lukasiak, Ryszard W. Adamiak, Jacek Blazewicz, Marta Szachniuk
2010 J jnl
RNA FRABASE 2.0: an advanced web-accessible database with the capacity to search the three-dimensional fragments within RNA structures.
BMC Bioinform.
Mariusz Popenda, Marta Szachniuk, Marek Blazewicz, Szymon Wasik, Edmund K. Burke, Jacek Blazewicz, Ryszard W. Adamiak
2009 C conf
An assignment walk through 3D NMR spectrum.
CIBCB
Marta Szachniuk, Mariusz Popenda, Ryszard W. Adamiak, Jacek Blazewicz
2008 J jnl
RNA FRABASE version 1.0: an engine with a database to search for the three-dimensional fragments within RNA structures.
Nucleic Acids Res.
Mariusz Popenda, Marek Blazewicz, Marta Szachniuk, Ryszard W. Adamiak
2004 J jnl
An Algorithm for an Automatic NOE Pathways Analysis of 2D NMR Spectra of RNA Duplexes.
J. Comput. Biol.
Ryszard W. Adamiak, Jacek Blazewicz, Piotr Formanowicz, Zofia Gdaniec, Marta Kasprzak, Mariusz Popenda, Marta Szachniuk