Mario Medvedovic

18 papers Misc 1Journal 16Unranked 1
YearRankTypeTitle / Venue / Authors
2022 J jnl
SigCom LINCS: data and metadata search engine for a million gene expression signatures.
Nucleic Acids Res.
John Erol Evangelista, Daniel J. B. Clarke, Zhuorui Xie, Alexander Lachmann, Minji Jeon, Kerwin Chen, Kathleen M. Jagodnik, Sherry L. Jenkins, Maxim V. Kuleshov, Megan L. Wojciechowicz, Stephan C. Schürer, Mario Medvedovic, Avi Ma'ayan
2020 J jnl
LINCS Data Portal 2.0: next generation access point for perturbation-response signatures.
Nucleic Acids Res.
Vasileios Stathias, John Paul Turner, Amar Koleti, Dusica Vidovic, Daniel J. Cooper, Mehdi Fazel-Najafabadi, Marcin Pilarczyk, Raymond Terryn, Caty Chung, Afoma Umeano, Daniel J. B. Clarke, Alexander Lachmann, John Erol Evangelista, Avi Ma'ayan, Mario Medvedovic, Stephan C. Schürer
2020 J jnl
Predicting mechanism of action of cellular perturbations with pathway activity signatures.
Bioinform.
Yan Ren, Siva Sivaganesan, Nicholas A. Clark, Lixia Zhang, Jacek Biesiada, Wen Niu, David R. Plas, Mario Medvedovic
2020 J jnl
piNET: a versatile web platform for downstream analysis and visualization of proteomics data.
Nucleic Acids Res.
Behrouz Shamsaei, Szymon Chojnacki, Marcin Pilarczyk, Mehdi Fazel-Najafabadi, Wen Niu, Chuming Chen, Karen Ross, Andrea Matlock, Jeremy Muhlich, Somchai Chutipongtanate, Jie Zheng, John Turner, Dusica Vidovic, Jake Jaffe, Michael J. MacCoss, Cathy Wu, Ajay Pillai, Avi Ma'ayan, Stephan C. Schürer, Michal Kouril, Mario Medvedovic, Jarek Meller
2018 J jnl
Data Portal for the Library of Integrated Network-based Cellular Signatures (LINCS) program: integrated access to diverse large-scale cellular perturbation response data.
Nucleic Acids Res.
Amar Koleti, Raymond Terryn, Vasileios Stathias, Caty Chung, Daniel J. Cooper, John Paul Turner, Dusica Vidovic, Michele Forlin, Tanya T. Kelley, Alessandro D'Urso, Bryce K. Allen, Denis Torre, Kathleen M. Jagodnik, Lily Wang, Sherry L. Jenkins, Christopher Mader, Wen Niu, Mehdi Fazel, Naim Al Mahi, Marcin Pilarczyk, Nicholas A. Clark, Behrouz Shamsaei, Jarek Meller, Juozas Vasiliauskas, John Reichard, Mario Medvedovic, Avi Ma'ayan, Ajay Pillai, Stephan C. Schürer
2013 J jnl
Genome-Wide Signatures of Transcription Factor Activity: Connecting Transcription Factors, Disease, and Small Molecules.
PLoS Comput. Biol.
Jing Chen, Zhen Hu, Mukta Phatak, John Reichard, Johannes M. Freudenberg, Siva Sivaganesan, Mario Medvedovic
2011 J jnl
Generalized random set framework for functional enrichment analysis using primary genomics datasets.
Bioinform.
Johannes M. Freudenberg, Siva Sivaganesan, Mukta Phatak, Kaustubh Shinde, Mario Medvedovic
2011 J jnl
WebGimm: An integrated web-based platform for cluster analysis, functional analysis, and interactive visualization of results.
Source Code Biol. Medicine
Vineet K. Joshi, Johannes M. Freudenberg, Zhen Hu, Mario Medvedovic
2010 J jnl
A semi-parametric Bayesian model for unsupervised differential co-expression analysis.
BMC Bioinform.
Johannes M. Freudenberg, Siva Sivaganesan, Michael Wagner, Mario Medvedovic
2010 Misc conf
Prior Information Based Bayesian Infinite Mixture Model.
ISAIM
Zhen Hu, Siva Sivaganesan, Mario Medvedovic
2009 J jnl
CLEAN: CLustering Enrichment ANalysis.
BMC Bioinform.
Johannes M. Freudenberg, Vineet K. Joshi, Zhen Hu, Mario Medvedovic
2009 J jnl
LRpath: a logistic regression approach for identifying enriched biological groups in gene expression data.
Bioinform.
Maureen A. Sartor, George D. Leikauf, Mario Medvedovic
2007 J jnl
Bayesian hierarchical model for transcriptional module discovery by jointly modeling gene expression and ChIP-chip data.
BMC Bioinform.
Xiangdong Liu, Walter J. Jessen, Siva Sivaganesan, Bruce J. Aronow, Mario Medvedovic
2006 J jnl
Context-specific infinite mixtures for clustering gene expression profiles across diverse microarray dataset.
Bioinform.
Xiangdong Liu, Siva Sivaganesan, Ka Yee Yeung, Junhai Guo, Roger Eugene Bumgarner, Mario Medvedovic
2006 J jnl
Intensity-based hierarchical Bayes method improves testing for differentially expressed genes in microarray experiments.
BMC Bioinform.
Maureen A. Sartor, Craig R. Tomlinson, Scott C. Wesselkamper, Siva Sivaganesan, George D. Leikauf, Mario Medvedovic
2004 — conf
Bayesian Model-Averaging in Unsupervised Learning From Microarray Data.
BIOKDD
Mario Medvedovic, Junhai Guo
2004 J jnl
Bayesian mixture model based clustering of replicated microarray data.
Bioinform.
Mario Medvedovic, Ka Yee Yeung, Roger Eugene Bumgarner
2002 J jnl
Bayesian infinite mixture model based clustering of gene expression profiles.
Bioinform.
Mario Medvedovic, Siva Sivaganesan