Mario Latendresse

35 papers B 1C 1Journal 26Unranked 7
YearRankTypeTitle / Venue / Authors
2023 J jnl
SynRoute: A Retrosynthetic Planning Software.
J. Chem. Inf. Model.
Mario Latendresse, Jeremiah P. Malerich, James Herson, Markus Krummenacker, Judy Szeto, Vi-Anh Vu, Nathan Collins, Peter B. Madrid
2021 J jnl
Pathway Tools version 23.0 update: software for pathway/genome informatics and systems biology.
Briefings Bioinform.
Peter D. Karp, Peter E. Midford, Richard Billington, Anamika Kothari, Markus Krummenacker, Mario Latendresse, Wai Kit Ong, Pallavi Subhraveti, Ron Caspi, Carol A. Fulcher, Ingrid M. Keseler, Suzanne M. Paley
2019 J jnl
The BioCyc collection of microbial genomes and metabolic pathways.
Briefings Bioinform.
Peter D. Karp, Richard Billington, Ron Caspi, Carol A. Fulcher, Mario Latendresse, Anamika Kothari, Ingrid M. Keseler, Markus Krummenacker, Peter E. Midford, Quang Ong, Wai Kit Ong, Suzanne M. Paley, Pallavi Subhraveti
2018 J jnl
Evaluation of reaction gap-filling accuracy by randomization.
BMC Bioinform.
Mario Latendresse, Peter D. Karp
2018 J jnl
How accurate is automated gap filling of metabolic models?
BMC Syst. Biol.
Peter D. Karp, Daniel S. Weaver, Mario Latendresse
2018 J jnl
The MetaCyc database of metabolic pathways and enzymes.
Nucleic Acids Res.
Ron Caspi, Richard Billington, Carol A. Fulcher, Ingrid M. Keseler, Anamika Kothari, Markus Krummenacker, Mario Latendresse, Peter E. Midford, Quang Ong, Wai Kit Ong, Suzanne M. Paley, Pallavi Subhraveti, Peter D. Karp
2017 J jnl
The EcoCyc database: reflecting new knowledge about Escherichia coli K-12.
Nucleic Acids Res.
Ingrid M. Keseler, Amanda Mackie, Alberto Santos-Zavaleta, Richard Billington, César Bonavides-Martínez, Ron Caspi, Carol A. Fulcher, Socorro Gama-Castro, Anamika Kothari, Markus Krummenacker, Mario Latendresse, Luis Muñiz-Rascado, Quang Ong, Suzanne M. Paley, Martín Peralta-Gil, Pallavi Subhraveti, David A. Velázquez-Ramírez, Daniel S. Weaver, Julio Collado-Vides, Ian T. Paulsen, Peter D. Karp
2016 J jnl
Pathway Tools version 19.0 update: software for pathway/genome informatics and systems biology.
Briefings Bioinform.
Peter D. Karp, Mario Latendresse, Suzanne M. Paley, Markus Krummenacker, Quang Ong, Richard Billington, Anamika Kothari, Daniel S. Weaver, Thomas J. Lee, Pallavi Subhraveti, Aaron Spaulding, Carol A. Fulcher, Ingrid M. Keseler, Ron Caspi
2016 J jnl
The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases.
Nucleic Acids Res.
Ron Caspi, Richard Billington, Luciana Ferrer, Hartmut Foerster, Carol A. Fulcher, Ingrid M. Keseler, Anamika Kothari, Markus Krummenacker, Mario Latendresse, Lukas A. Mueller, Quang Ong, Suzanne M. Paley, Pallavi Subhraveti, Daniel S. Weaver, Peter D. Karp
2014 J jnl
Conservative groupoids recognize only regular languages.
Inf. Comput.
Martin Beaudry, Danny Dubé, Maxime Dubé, Mario Latendresse, Pascal Tesson
2014 J jnl
Efficiently Gap-Filling Reaction Networks.
BMC Bioinform.
Mario Latendresse
2014 J jnl
Optimal metabolic route search based on atom mappings.
Bioinform.
Mario Latendresse, Markus Krummenacker, Peter D. Karp
2014 J jnl
The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases.
Nucleic Acids Res.
Ron Caspi, Tomer Altman, Richard Billington, Kate Dreher, Hartmut Foerster, Carol A. Fulcher, Timothy A. Holland, Ingrid M. Keseler, Anamika Kothari, Aya Kubo, Markus Krummenacker, Mario Latendresse, Lukas A. Mueller, Quang Ong, Suzanne M. Paley, Pallavi Subhraveti, Daniel S. Weaver, Deepika Weerasinghe, Peifen Zhang, Peter D. Karp
2013 J jnl
EcoCyc: fusing model organism databases with systems biology.
Nucleic Acids Res.
Ingrid M. Keseler, Amanda Mackie, Martín Peralta-Gil, Alberto Santos-Zavaleta, Socorro Gama-Castro, César Bonavides-Martínez, Carol A. Fulcher, Araceli M. Huerta, Anamika Kothari, Markus Krummenacker, Mario Latendresse, Luis Muñiz-Rascado, Quang Ong, Suzanne M. Paley, Imke Schröder, Alexander Glennon Shearer, Pallavi Subhraveti, Michael Travers, Deepika Weerasinghe, Verena Weiss, Julio Collado-Vides, Robert P. Gunsalus, Ian T. Paulsen, Peter D. Karp
2012 J jnl
Accurate Atom-Mapping Computation for Biochemical Reactions.
J. Chem. Inf. Model.
Mario Latendresse, Jeremiah P. Malerich, Mike Travers, Peter D. Karp
2012 C conf
Conservative Groupoids Recognize Only Regular Languages.
LATA
Danny Dubé, Mario Latendresse, Pascal Tesson
2012 J jnl
Construction and completion of flux balance models from pathway databases.
Bioinform.
Mario Latendresse, Markus Krummenacker, Miles Trupp, Peter D. Karp
2012 J jnl
Regulatory network operations in the Pathway Tools software.
BMC Bioinform.
Suzanne M. Paley, Mario Latendresse, Peter D. Karp
2012 J jnl
The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases.
Nucleic Acids Res.
Ron Caspi, Tomer Altman, Kate Dreher, Carol A. Fulcher, Pallavi Subhraveti, Ingrid M. Keseler, Anamika Kothari, Markus Krummenacker, Mario Latendresse, Lukas A. Mueller, Quang Ong, Suzanne M. Paley, Anuradha Pujar, Alexander Glennon Shearer, Michael Travers, Deepika Weerasinghe, Peifen Zhang, Peter D. Karp
2011 J jnl
EcoCyc: a comprehensive database of
Nucleic Acids Res.
Ingrid M. Keseler, Julio Collado-Vides, Alberto Santos-Zavaleta, Martín Peralta-Gil, Socorro Gama-Castro, Luis Muñiz-Rascado, César Bonavides-Martínez, Suzanne M. Paley, Markus Krummenacker, Tomer Altman, Pallavi Kaipa, Aaron Spaulding, John Pacheco, Mario Latendresse, Carol A. Fulcher, Malabika Sarker, Alexander Glennon Shearer, Amanda Mackie, Ian T. Paulsen, Robert P. Gunsalus, Peter D. Karp
2011 — conf
Using cellular network diagrams to interpret large-scale datasets: past progress and future challenges.
Human Vision and Electronic Imaging
Peter D. Karp, Mario Latendresse, Suzanne M. Paley
2011 J jnl
Web-Based Metabolic Network Visualization with a Zooming User Interface.
BMC Bioinform.
Mario Latendresse, Peter D. Karp
2010 J jnl
An advanced web query interface for biological databases.
Database J. Biol. Databases Curation
Mario Latendresse, Peter D. Karp
2010 J jnl
Pathway Tools version 13.0: integrated software for pathway/genome informatics and systems biology.
Briefings Bioinform.
Peter D. Karp, Suzanne M. Paley, Markus Krummenacker, Mario Latendresse, Joseph M. Dale, Thomas J. Lee, Pallavi Kaipa, Fred Gilham, Aaron Spaulding, Liviu Popescu, Tomer Altman, Ian T. Paulsen, Ingrid M. Keseler, Ron Caspi
2010 J jnl
The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases.
Nucleic Acids Res.
Ron Caspi, Tomer Altman, Joseph M. Dale, Kate Dreher, Carol A. Fulcher, Fred Gilham, Pallavi Kaipa, Athikkattuvalasu S. Karthikeyan, Anamika Kothari, Markus Krummenacker, Mario Latendresse, Lukas A. Mueller, Suzanne M. Paley, Liviu Popescu, Anuradha Pujar, Alexander Glennon Shearer, Peifen Zhang, Peter D. Karp
2008 J jnl
The MetaCyc Database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases.
Nucleic Acids Res.
Ron Caspi, Hartmut Foerster, Carol A. Fulcher, Pallavi Kaipa, Markus Krummenacker, Mario Latendresse, Suzanne M. Paley, Seung Yon Rhee, Alexander Glennon Shearer, Christophe Tissier, Thomas C. Walk, Peifen Zhang, Peter D. Karp
2007 — conf
Simple and efficient compilation of list comprehension in common Lisp.
ILC
Mario Latendresse
2005 J jnl
Generation of fast interpreters for Huffman compressed bytecode.
Sci. Comput. Program.
Mario Latendresse, Marc Feeley
2005 B conf
Masquerade Detection via Customized Grammars.
DIMVA
Mario Latendresse
2004 — conf
Rewrite Systems for Symbolic Evaluation of C-like Preprocessing.
CSMR
Mario Latendresse
2003 — conf
Fast Symbolic Evaluation of C/C++ Preprocessing Using Conditional Value.
CSMR
Mario Latendresse
2003 — conf
Generation of fast interpreters for Huffman compressed bytecode.
IVME
Mario Latendresse, Marc Feeley
2003 — conf
RegReg: a Lightweight Generator of Robust Parsers for Irregular Languages.
WCRE
Mario Latendresse
2001 — conf
Behavioral contracts and behavioral subtyping.
ESEC / SIGSOFT FSE
Robert Bruce Findler, Mario Latendresse, Matthias Felleisen
1992 J jnl
A Debugging Environment for Lazy Functional Languages.
LISP Symb. Comput.
Guy Lapalme, Mario Latendresse