Marina Sirota

17 papers Misc 3Journal 13Unranked 1
YearRankTypeTitle / Venue / Authors
2025 J jnl
Identifying progression subphenotypes of Alzheimer's disease from large-scale electronic health records with machine learning.
J. Biomed. Informatics
Manqi Zhou, Alice S. Tang, Hao Zhang, Zhenxing Xu, Alison M. C. Ke, Chang Su, Yu Huang, William G. Mantyh, Michael Jaffee, Katherine P. Rankin, Steven DeKosky, Jiayu Zhou, Yi Guo, Jiang Bian, Marina Sirota, Fei Wang
2023 J jnl
Target-agnostic drug prediction integrated with medical record analysis uncovers differential associations of statins with increased survival in COVID-19 patients.
PLoS Comput. Biol.
Megan M. Sperry, Tomiko Oskotsky, Ivana Maric, Shruti Kaushal, Takako Takeda, Viktor Horvath, Rani K. Powers, Melissa Rodas, Brooke Furlong, Mercy Soong, Pranav Prabhala, Girija Goyal, Kenneth E. Carlson, Ronald J. Wong, Idit Kosti, Brian L. Le, James Logue, Holly Hammond, Matthew Frieman, David K. Stevenson, Donald E. Ingber, Marina Sirota, Richard Novák
2022 J jnl
Nurturing diversity and inclusion in AI in Biomedicine through a virtual summer program for high school students.
PLoS Comput. Biol.
Tomiko Oskotsky, Ruchika Bajaj, Jillian Burchard, Taylor Cavazos, Ina Chen, William T. Connell, Stephanie Eaneff, Tianna Grant, Ishan Kanungo, Karla Lindquist, Douglas Myers-Turnbull, Zun Zar Chi Naing, Alice Tang, Bianca Vora, Jon Wang, Isha Karim, Claire Swadling, Janice Yang, AI4ALL Student Cohort, Bill Lindstaedt, Marina Sirota
2021 J jnl
dittoSeq: universal user-friendly single-cell and bulk RNA sequencing visualization toolkit.
Bioinform.
Daniel G. Bunis, Jared M. Andrews, Gabriela K. Fragiadakis, Trevor D. Burt, Marina Sirota
2020 J jnl
Applications of Machine Learning to In Silico Quantification of Chemicals without Analytical Standards.
J. Chem. Inf. Model.
Dimitri Panagopoulos Abrahamsson, June-Soo Park, Randolph R. Singh, Marina Sirota, Tracey J. Woodruff
2020 J jnl
Protected Health Information filter (Philter): accurately and securely de-identifying free-text clinical notes.
npj Digit. Medicine
Beau Norgeot, Kathleen Muenzen, Thomas A. Peterson, Xuancheng Fan, Benjamin S. Glicksberg, Gundolf Schenk, Eugenia Rutenberg, Boris Oskotsky, Marina Sirota, Jinoos Yazdany, Gabriela Schmajuk, Dana Ludwig, Theodore C. Goldstein, Atul J. Butte
2019 J jnl
Multiomics modeling of the immunome, transcriptome, microbiome, proteome and metabolome adaptations during human pregnancy.
Bioinform.
Mohammad Sajjad Ghaemi, Daniel B. DiGiulio, Kévin Contrepois, Benjamin J. Callahan, Thuy T. M. Ngo, Brittany Lee-McMullen, Benoit Lehallier, Anna Robaczewska, David Mcilwain, Yael Rosenberg-Hasson, Ronald J. Wong, Cecele Quaintance, Anthony Culos, Natalie Stanley, Athena Tanada, Amy Tsai, Dyani Gaudilliere, Edward Ganio, Xiaoyuan Han, Kazuo Ando, Leslie McNeil, Martha Tingle, Paul H. Wise, Ivana Maric, Marina Sirota, Tony Wyss-Coray, Virginia D. Winn, Maurice L. Druzin, Ronald Gibbs, Gary L. Darmstadt, David B. Lewis, Vahid Partovi Nia, Bruno Agard, Robert Tibshirani, Garry P. Nolan, Michael P. Snyder, David A. Relman, Stephen R. Quake, Gary M. Shaw, David K. Stevenson, Martin S. Angst, Brice Gaudilliere, Nima Aghaeepour
2017 — conf
Ethnic and gender disparity in organ transplant clinical trials and electronic health records.
CRI
Jieming Chen, Sanchita Bhattacharya, Marina Sirota, Minnie M. Sarwal, Atul J. Butte
2017 J jnl
Synergistic drug combinations from electronic health records and gene expression.
J. Am. Medical Informatics Assoc.
Yen S. Low, Aaron C. Daugherty, Elizabeth A. Schroeder, William Chen, Tina Seto, Susan C. Weber, Michael Lim, Trevor Hastie, Maya Mathur, Manisha Desai, Carl Farrington, Andrew A. Radin, Marina Sirota, Pragati Kenkare, Caroline A. Thompson, Peter P. Yu, Scarlett L. Gomez, George W. Sledge, Allison W. Kurian, Nigam H. Shah
2016 J jnl
Constraints on Biological Mechanism from Disease Comorbidity Using Electronic Medical Records and Database of Genetic Variants.
PLoS Comput. Biol.
Steven C. Bagley, Marina Sirota, Richard O. Chen, Atul J. Butte, Russ B. Altman
2015 Misc conf
A Systematic Assessment of Linking Gene Expression with Genetic Variants for Prioritizing Candidate Targets.
Pacific Symposium on Biocomputing
Hua Fan-Minogue, Bin Chen, Weronika Sikora-Wohlfeld, Marina Sirota, Atul J. Butte
2015 Misc conf
Characteristics of Drug Combination Therapy in Oncology by Analyzing Clinical Trial Data on Clinicaltrials.Gov.
Pacific Symposium on Biocomputing
Menghua Wu, Marina Sirota, Atul J. Butte, Bin Chen
2015 J jnl
Fighting disease with data.
XRDS
Marina Sirota, Bin Chen
2015 Misc conf
Human Computation of Big Data in Biomedicine: Making STAR annotations for large scale functional characterization of disease.
AMIA
Dexter Hadley, James Pan, Osama M. El-Sayed, Jihad Al-Jabban, Imad Al-Jabban, Tej Azad, Shuaib Raza, Mohamed Hadied, Bin Chen, Hyojung Paik, Sanchita Bhattacharya, Marina Sirota, Atul J. Butte
2012 J jnl
Ten Years of Pathway Analysis: Current Approaches and Outstanding Challenges.
PLoS Comput. Biol.
Purvesh Khatri, Marina Sirota, Atul J. Butte
2010 J jnl
Identifying a High Fraction of the Human Genome to be under Selective Constraint Using GERP++.
PLoS Comput. Biol.
Eugene Davydov, David L. Goode, Marina Sirota, Gregory M. Cooper, Arend Sidow, Serafim Batzoglou
2009 J jnl
A Classifier-based approach to identify genetic similarities between diseases.
Bioinform.
Marc A. Schaub, Irene M. Kaplow, Marina Sirota, Chuong B. Do, Atul J. Butte, Serafim Batzoglou