Marianne Rooman

30 papers Journal 27Unranked 3
YearRankTypeTitle / Venue / Authors
2025 J jnl
Residue conservation and solvent accessibility are (almost) all you need for predicting mutational effects in proteins.
Bioinform.
Matsvei Tsishyn, Pauline Hermans, Marianne Rooman, Fabrizio Pucci
2024 J jnl
Quantification of biases in predictions of protein-protein binding affinity changes upon mutations.
Briefings Bioinform.
Matsvei Tsishyn, Fabrizio Pucci, Marianne Rooman
2024 J jnl
pycofitness - Evaluating the fitness landscape of RNA and protein sequences.
Bioinform.
Fabrizio Pucci, Mehari B. Zerihun, Marianne Rooman, Alexander Schug
2023 J jnl
Critical review of conformational B-cell epitope prediction methods.
Briefings Bioinform.
Gabriel Cia, Fabrizio Pucci, Marianne Rooman
2023 J jnl
Estimating the Vertical Ionization Potential of Single-Stranded DNA Molecules.
J. Chem. Inf. Model.
Marianne Rooman, Fabrizio Pucci
2022 J jnl
SpikePro: a webserver to predict the fitness of SARS-CoV-2 variants.
Bioinform.
Gabriel Cia, Jean Marc Kwasigroch, Marianne Rooman, Fabrizio Pucci
2021 J jnl
AI challenges for predicting the impact of mutations on protein stability.
CoRR
Fabrizio Pucci, Martin Schwersensky, Marianne Rooman
2021 J jnl
BRANEart: Identify Stability Strength and Weakness Regions in Membrane Proteins.
Frontiers Bioinform.
Sankar Basu, Simon S. Assaf, Fabian Teheux, Marianne Rooman, Fabrizio Pucci
2021 J jnl
MutaFrame - an interpretative visualization framework for deleteriousness prediction of missense variants in the human exome.
Bioinform.
François Ancien, Fabrizio Pucci, Wim F. Vranken, Marianne Rooman
2021 J jnl
SWOTein: a structure-based approach to predict stability Strengths and Weaknesses of prOTEINs.
Bioinform.
Qingzhen Hou, Fabrizio Pucci, François Ancien, Jean Marc Kwasigroch, Raphaël Bourgeas, Marianne Rooman
2020 J jnl
SOLart: a structure-based method to predict protein solubility and aggregation.
Bioinform.
Qingzhen Hou, Jean Marc Kwasigroch, Marianne Rooman, Fabrizio Pucci
2018 J jnl
Lexicon Visualization Library and JavaScript for Scientific Data Visualization.
Comput. Sci. Eng.
Ibrahim Tanyalcin, Carla Al Assaf, Julien Ferté, François Ancien, Taushif Khan, Guillaume Smits, Marianne Rooman, Wim F. Vranken
2018 J jnl
Quantification of biases in predictions of protein stability changes upon mutations.
Bioinform.
Fabrizio Pucci, Katrien V. Bernaerts, Jean Marc Kwasigroch, Marianne Rooman
2017 J jnl
DEOGEN2: prediction and interactive visualization of single amino acid variant deleteriousness in human proteins.
Nucleic Acids Res.
Daniele Raimondi, Ibrahim Tanyalcin, Julien Ferté, Andrea M. Gazzo, Gabriele Orlando, Tom Lenaerts, Marianne Rooman, Wim F. Vranken
2017 J jnl
SCooP: an accurate and fast predictor of protein stability curves as a function of temperature.
Bioinform.
Fabrizio Pucci, Jean Marc Kwasigroch, Marianne Rooman
2017 J jnl
SEPIa, a knowledge-driven algorithm for predicting conformational B-cell epitopes from the amino acid sequence.
BMC Bioinform.
Georgios A. Dalkas, Marianne Rooman
2016 J jnl
Multilevel biological characterization of exomic variants at the protein level significantly improves the identification of their deleterious effects.
Bioinform.
Daniele Raimondi, Andrea M. Gazzo, Marianne Rooman, Tom Lenaerts, Wim F. Vranken
2014 J jnl
Stability Curve Prediction of Homologous Proteins Using Temperature-Dependent Statistical Potentials.
PLoS Comput. Biol.
Fabrizio Pucci, Marianne Rooman
2013 J jnl
BeAtMuSiC: prediction of changes in protein-protein binding affinity on mutations.
Nucleic Acids Res.
Yves Dehouck, Jean Marc Kwasigroch, Marianne Rooman, Dimitri Gilis
2012 — conf
Identification of protein stability patches that pinpoint key structural or functional sites.
BCB
Marie De Laet, Yves Dehouck, Dimitri Gilis, Marianne Rooman
2011 — conf
Modeling Delays in State Transition of a Bistable Genetic Switch under the Influence of Extrinsic Noise.
BIOINFORMATICS
Jaroslav Albert, Marianne Rooman
2011 J jnl
PoPMuSiC 2.1 : a web server for the estimation of protein stability changes upon mutation and sequence optimality.
BMC Bioinform.
Yves Dehouck, Jean Marc Kwasigroch, Dimitri Gilis, Marianne Rooman
2010 J jnl
Gene expression model (in)validation by Fourier analysis.
BMC Syst. Biol.
Tomasz Konopka, Marianne Rooman
2010 — conf
Robustness Analysis of a Linear Dynamical Model of the
CIBB
Alexandre Haye, Jaroslav Albert, Marianne Rooman
2009 J jnl
Fast and accurate predictions of protein stability changes upon mutations using statistical potentials and neural networks: PoPMuSiC-2.0.
Bioinform.
Yves Dehouck, Aline Grosfils, Benjamin Folch, Dimitri Gilis, Philippe Bogaerts, Marianne Rooman
2008 J jnl
SODa: An Mn/Fe superoxide dismutase prediction and design server.
BMC Bioinform.
Jean Marc Kwasigroch, René Wintjens, Dimitri Gilis, Marianne Rooman
2008 J jnl
Thermostability of Salt Bridges versus Hydrophobic Interactions in Proteins Probed by Statistical Potentials.
J. Chem. Inf. Model.
Benjamin Folch, Marianne Rooman, Yves Dehouck
2006 J jnl
Development of Novel Statistical Potentials Describing Cation-pi Interactions in Proteins and Comparison with Semiempirical and Quantum Chemistry Approaches.
J. Chem. Inf. Model.
Dimitri Gilis, Christophe Biot, Eric Buisine, Yves Dehouck, Marianne Rooman
2006 J jnl
Prelude&Fugue, predicting local protein structure, early folding regions and structural weaknesses.
Bioinform.
Jean Marc Kwasigroch, Marianne Rooman
2002 J jnl
PoPMuSiC, rationally designing point mutations in protein structures.
Bioinform.
Jean Marc Kwasigroch, Dimitri Gilis, Yves Dehouck, Marianne Rooman