Maria D. Paraskevopoulou

13 papers Journal 13
YearRankTypeTitle / Venue / Authors
2025 J jnl
microT-CNN: an avant-garde deep convolutional neural network unravels functional miRNA targets beyond canonical sites.
Briefings Bioinform.
Elissavet Zacharopoulou, Maria D. Paraskevopoulou, Spyros Tastsoglou, Athanasios Alexiou, Anna Karavangeli, Vasileios Pierros, Stefanos Digenis, Galatea Mavromati, Artemis G. Hatzigeorgiou, Dimitra Karagkouni
2020 J jnl
DIANA-LncBase v3: indexing experimentally supported miRNA targets on non-coding transcripts.
Nucleic Acids Res.
Dimitra Karagkouni, Maria D. Paraskevopoulou, Spyros Tastsoglou, Giorgos Skoufos, Anna Karavangeli, Vasileios Pierros, Elissavet Zacharopoulou, Artemis G. Hatzigeorgiou
2018 J jnl
DIANA-TarBase v8: a decade-long collection of experimentally supported miRNA-gene interactions.
Nucleic Acids Res.
Dimitra Karagkouni, Maria D. Paraskevopoulou, Serafeim Chatzopoulos, Ioannis S. Vlachos, Spyros Tastsoglou, Ilias Kanellos, Dimitris Papadimitriou, Ioannis Kavakiotis, Sofia Maniou, Giorgos Skoufos, Thanasis Vergoulis, Theodore Dalamagas, Artemis G. Hatzigeorgiou
2017 J jnl
BUFET: boosting the unbiased miRNA functional enrichment analysis using bitsets.
BMC Bioinform.
Konstantinos Zagganas, Thanasis Vergoulis, Maria D. Paraskevopoulou, Ioannis S. Vlachos, Spiros Skiadopoulos, Theodore Dalamagas
2016 J jnl
DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts.
Nucleic Acids Res.
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios K. Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, Artemis G. Hatzigeorgiou
2016 J jnl
DIANA-miRGen v3.0: accurate characterization of microRNA promoters and their regulators.
Nucleic Acids Res.
Georgios K. Georgakilas, Ioannis S. Vlachos, Konstantinos Zagganas, Thanasis Vergoulis, Maria D. Paraskevopoulou, Ilias Kanellos, Panayiotis Tsanakas, Dimitris Dellis, Athanasios Fevgas, Theodore Dalamagas, Artemis G. Hatzigeorgiou
2016 J jnl
DIANA-mirExTra v2.0: Uncovering microRNAs and transcription factors with crucial roles in NGS expression data.
Nucleic Acids Res.
Ioannis S. Vlachos, Thanasis Vergoulis, Maria D. Paraskevopoulou, Filopoimin Lykokanellos, Georgios K. Georgakilas, Penny Georgiou, Serafeim Chatzopoulos, Dimitra Karagkouni, Foteini Christodoulou, Theodore Dalamagas, Artemis G. Hatzigeorgiou
2015 J jnl
DIANA-TarBase v7.0: indexing more than half a million experimentally supported miRNA: mRNA interactions.
Nucleic Acids Res.
Ioannis S. Vlachos, Maria D. Paraskevopoulou, Dimitra Karagkouni, Georgios K. Georgakilas, Thanasis Vergoulis, Ilias Kanellos, Ioannis-Laertis Anastasopoulos, Sofia Maniou, Konstantina Karathanou, Despina Kalfakakou, Athanasios Fevgas, Theodore Dalamagas, Artemis G. Hatzigeorgiou
2015 J jnl
DIANA-miRPath v3.0: deciphering microRNA function with experimental support.
Nucleic Acids Res.
Ioannis S. Vlachos, Konstantinos Zagganas, Maria D. Paraskevopoulou, Georgios K. Georgakilas, Dimitra Karagkouni, Thanasis Vergoulis, Theodore Dalamagas, Artemis G. Hatzigeorgiou
2013 J jnl
BiDaS: a web-based Monte Carlo BioData Simulator based on sequence/feature characteristics.
Nucleic Acids Res.
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Emmanouil Athanasiadis, George M. Spyrou
2013 J jnl
DIANA-LncBase: experimentally verified and computationally predicted microRNA targets on long non-coding RNAs.
Nucleic Acids Res.
Maria D. Paraskevopoulou, Georgios K. Georgakilas, Nikos Kostoulas, Martin Reczko, Manolis Maragkakis, Theodore M. Dalamagas, Artemis G. Hatzigeorgiou
2013 J jnl
DIANA-microT web server v5.0: service integration into miRNA functional analysis workflows.
Nucleic Acids Res.
Maria D. Paraskevopoulou, Georgios K. Georgakilas, Nikos Kostoulas, Ioannis S. Vlachos, Thanasis Vergoulis, Martin Reczko, Christos Filippidis, Theodore Dalamagas, Artemis G. Hatzigeorgiou
2012 J jnl
DIANA miRPath v.2.0: investigating the combinatorial effect of microRNAs in pathways.
Nucleic Acids Res.
Ioannis S. Vlachos, Nikos Kostoulas, Thanasis Vergoulis, Georgios K. Georgakilas, Martin Reczko, Manolis Maragkakis, Maria D. Paraskevopoulou, Kostantinos Prionidis, Theodore Dalamagas, Artemis G. Hatzigeorgiou