Marek Palkowski

53 papers B 1C 9Journal 14Unranked 29
YearRankTypeTitle / Venue / Authors
2025 J jnl
Cross-platform and polyhedral programming for Nussinov RNA folding.
Future Gener. Comput. Syst.
Mateusz Gruzewski, Marek Palkowski
2025 B conf
Knowledge Extraction for RNA Secondary Structure Prediction Using Heterogeneous and Dynamic Programming.
KES
Mateusz Gruzewski, Marek Palkowski
2025 C conf
NPDP programming for RISC multi-core processors.
FedCSIS
Marek Palkowski, Mateusz Gruzewski
2024 C conf
Automatic Generation of OpenCL Code through Polyhedral Compilation with LLM.
FedCSIS
Marek Palkowski, Mateusz Gruzewski
2024 — conf
LLM-Driven Cross-Platform Code Generation for Polyhedral Optimized NPDP Codes.
PPAM (2)
Marek Palkowski
2023 J jnl
NPDP benchmark suite for the evaluation of the effectiveness of automatic optimizing compilers.
Parallel Comput.
Marek Palkowski, Wlodzimierz Bielecki
2023 — conf
Polyhedral Tiling Strategies for the Zuker Algorithm Optimization.
FedCSIS (Communication Papers)
Wlodzimierz Bielecki, Marek Palkowski, Piotr Blaszynski, Maciej Poliwoda
2022 C conf
Automatic code optimization for computing the McCaskill partition functions.
FedCSIS
Wlodzimierz Bielecki, Marek Palkowski, Maciej Poliwoda
2022 — conf
NPDP Benchmark Suite for Loop Tiling Effectiveness Evaluation.
PPAM (2)
Marek Palkowski, Wlodzimierz Bielecki
2021 — conf
Implementation of Nussinov's RNA Folding Using the Kokkos Library.
CORES/IP&C/ACS
Mateusz Gruzewski, Marek Palkowski
2021 — conf
RNA Folding Codes Optimization Using the Intel SDK for OpenCL.
ICAISC (2)
Mateusz Gruzewski, Marek Palkowski
2020 — conf
Automatic Generation of Parallel Cache-Efficient Code Implementing Zuker's RNA Folding.
ICAISC (1)
Marek Palkowski, Wlodzimierz Bielecki, Mateusz Gruzewski
2020 J jnl
Parallel tiled cache and energy efficient codes for O(n4) RNA folding algorithms.
J. Parallel Distributed Comput.
Marek Palkowski, Wlodzimierz Bielecki
2019 — conf
Energy Consumption Analysis of the Nussinov RNA Folding Implementations.
ICAISC (2)
Marek Palkowski
2019 — conf
Parallel Tiled Cache and Energy Efficient Code for Zuker's RNA Folding.
PPAM (2)
Marek Palkowski, Wlodzimierz Bielecki
2019 C conf
Parallel cache-efficient code for computing the McCaskill partition functions.
FedCSIS
Marek Palkowski, Wlodzimierz Bielecki
2019 J jnl
Tiling Nussinov's RNA folding loop nest with a space-time approach.
BMC Bioinform.
Marek Palkowski, Wlodzimierz Bielecki
2018 — conf
Accelerating Minimum Cost Polygon Triangulation Code with the TRACO Compiler.
FedCSIS (Communication Papers)
Marek Palkowski, Wlodzimierz Bielecki
2018 J jnl
Generation of parallel synchronization-free tiled code.
Computing
Wlodzimierz Bielecki, Marek Palkowski, Piotr Skotnicki
2018 — conf
Parallel Cache Efficient Algorithm and Implementation of Needleman-Wunsch Global Sequence Alignment.
ICAISC (2)
Marek Palkowski, Krzysztof Siedlecki, Wlodzimierz Bielecki
2018 J jnl
Parallel Tiled Codes Implementing the Smith-Waterman Alignment Algorithm for Two and Three Sequences.
J. Comput. Biol.
Marek Palkowski, Wlodzimierz Bielecki
2018 — conf
Transitive Closure Based Schedule of Loop Nest Statement Instances.
ACS
Wlodzimierz Bielecki, Marek Palkowski
2018 J jnl
Tuning iteration space slicing based tiled multi-core code implementing Nussinov's RNA folding.
BMC Bioinform.
Marek Palkowski, Wlodzimierz Bielecki
2017 — conf
A Practical Approach to Tiling Zuker's RNA Folding Using the Transitive Closure of Loop Dependence Graphs.
ISAT (2)
Marek Palkowski, Wlodzimierz Bielecki
2017 — conf
Improving Data Locality of RNA Secondary Structure Prediction Code.
ICAISC (1)
Marek Palkowski, Wlodzimierz Bielecki, Piotr Skotnicki
2017 C conf
Optimizing Numerical Code by means of the Transitive Closure of Dependence Graphs.
FedCSIS
Marek Palkowski, Wlodzimierz Bielecki
2017 J jnl
Parallel Tiled Code Generation with Loop Permutation within Tiles.
Comput. Informatics
Marek Palkowski, Wlodzimierz Bielecki
2017 J jnl
Parallel tiled Nussinov RNA folding loop nest generated using both dependence graph transitive closure and loop skewing.
BMC Bioinform.
Marek Palkowski, Wlodzimierz Bielecki
2016 C conf
An Iteration Space Visualizer for Polyhedral Loop Transformations in Numerical Programming.
FedCSIS
Marek Palkowski, Wlodzimierz Bielecki
2016 — conf
Finding Free Schedules for RNA Secondary Structure Prediction.
ICAISC (2)
Marek Palkowski
2016 — conf
Loop Nest Tiling for Image Processing and Communication Applications.
ACS
Wlodzimierz Bielecki, Marek Palkowski
2016 — conf
Synchronization-Free Automatic Parallelization for Arbitrarily Nested Affine Loops.
SBAC-PAD (Workshops)
Tomasz Klimek, Marek Palkowski, Wlodzimierz Bielecki
2016 J jnl
TRACO: Source-to-Source Parallelizing Compiler.
Comput. Informatics
Marek Palkowski, Wlodzimierz Bielecki
2016 J jnl
Tiling arbitrarily nested loops by means of the transitive closure of dependence graphs.
Int. J. Appl. Math. Comput. Sci.
Wlodzimierz Bielecki, Marek Palkowski
2015 — conf
Free Scheduling of Tiles Based on the Transitive Closure of Dependence Graphs.
PPAM (2)
Wlodzimierz Bielecki, Marek Palkowski, Tomasz Klimek
2015 C conf
TRACO: An automatic loop nest parallelizer for numerical applications.
FedCSIS
Marek Palkowski, Tomasz Klimek, Wlodzimierz Bielecki
2015 — conf
Using an Artificial Neural Network to Predict Loop Transformation Time.
ICAISC (1)
Marek Palkowski, Wlodzimierz Bielecki
2014 — conf
Perfectly Nested Loop Tiling Transformations Based on the Transitive Closure of the Program Dependence Graph.
ACS
Wlodzimierz Bielecki, Marek Palkowski
2014 — conf
TRACO Parallelizing Compiler.
ACS
Marek Palkowski, Wlodzimierz Bielecki
2014 — conf
Usage of the TRACO Compiler for Neural Network Parallelization.
ICAISC (1)
Marek Palkowski, Wlodzimierz Bielecki
2012 J jnl
An Iterative Algorithm of Computing the Transitive Closure of a Union of Parametrized Affine Integer Tuple Relations.
Discret. Math. Algorithms Appl.
Wlodzimierz Bielecki, Tomasz Klimek, Marek Palkowski, Anna Beletska
2012 — conf
Automatic Privatization for Parallel Execution of Loops.
ICAISC (2)
Marek Palkowski
2012 J jnl
Free scheduling for statement instances of parameterized arbitrarily nested affine loops.
Parallel Comput.
Wlodzimierz Bielecki, Marek Palkowski, Tomasz Klimek
2012 — conf
Impact of Variable Privatization on Extracting Synchronization-Free Slices for Multi-core Computers.
Facing the Multicore-Challenge
Marek Palkowski
2011 J jnl
Coarse-grained loop parallelization: Iteration Space Slicing vs affine transformations.
Parallel Comput.
Anna Beletska, Wlodzimierz Bielecki, Albert Cohen, Marek Palkowski, Krzysztof Siedlecki
2011 — conf
Using Free Scheduling for Programming Graphic Cards.
Facing the Multicore-Challenge
Wlodzimierz Bielecki, Marek Palkowski
2010 — conf
An Iterative Algorithm of Computing the Transitive Closure of a Union of Parameterized Affine Integer Tuple Relations.
COCOA (1)
Wlodzimierz Bielecki, Tomasz Klimek, Marek Palkowski, Anna Beletska
2010 — conf
Coarse-Grained Loop Parallelization for Image Processing and Communication Applications.
IP&C
Wlodzimierz Bielecki, Marek Palkowski
2009 C conf
Coarse-Grained Loop Parallelization: Iteration Space Slicing vs Affine Transformations.
ISPDC
Anna Beletska, Wlodzimierz Bielecki, Albert Cohen, Marek Palkowski, Krzysztof Siedlecki
2009 — conf
Extracting Both Affine and Non-linear Synchronization-Free Slices in Program Loops.
PPAM (1)
Wlodzimierz Bielecki, Marek Palkowski
2009 — conf
Synchronization-Free Automatic Parallelization: Beyond Affine Iteration-Space Slicing.
LCPC
Anna Beletska, Wlodzimierz Bielecki, Albert Cohen, Marek Palkowski
2008 C conf
Finding Synchronization-Free Parallelism Represented with Trees of Dependent Operations.
ICA3PP
Wlodzimierz Bielecki, Anna Beletska, Marek Palkowski, Pierluigi San Pietro
2008 — conf
Using Message Passing for Developing Coarse-Grained Applications in OpenMP.
ICSOFT (PL/DPS/KE)
Wlodzimierz Bielecki, Marek Palkowski