Mareike Thies

64 papers Journal 35Unranked 29
YearRankTypeTitle / Venue / Authors
2026 — conf
Abstract: BigReg - An Efficient Registration Pipeline for High-resolution X-ray and Light-sheet Fluorescence Microscopy.
Bildverarbeitung für die Medizin
Siyuan Mei, Fuxin Fan, Mareike Thies, Mingxuan Gu, Fabian Wagner, Oliver Aust, Ina Erceg, Zeynab Mirzaei, Georgiana Neag, Yipeng Sun, Yixing Huang, Andreas Maier
2026 — conf
Abstract: DRACO - Differentiable Reconstruction for Arbitrary CBCT Orbits.
Bildverarbeitung für die Medizin
Chengze Ye, Linda-Sophie Schneider, Yipeng Sun, Mareike Thies, Siyuan Mei, Andreas Maier
2025 J jnl
A Gradient-Based Approach to Fast and Accurate Head Motion Compensation in Cone-Beam CT.
IEEE Trans. Medical Imaging
Mareike Thies, Fabian Wagner, Noah Maul, Haijun Yu, Manuela Goldmann, Linda-Sophie Schneider, Mingxuan Gu, Siyuan Mei, Lukas Folle, Alexander Preuhs, Michael Manhart, Andreas K. Maier
2025 — conf
Abstract: Simulation-informed Learning for Time-resolved Angiographic Contrast Agent Concentration Reconstruction.
Bildverarbeitung für die Medizin
Noah Maul, Annette Birkhold, Fabian Wagner, Mareike Thies, Maximilian Rohleder, Philipp Berg, Markus Kowarschik, Andreas K. Maier
2025 J jnl
Compressibility Analysis for the differentiable shift-variant Filtered Backprojection Model.
CoRR
Chengze Ye, Linda-Sophie Schneider, Yipeng Sun, Mareike Thies, Andreas K. Maier
2025 J jnl
CyclePose - Leveraging Cycle-Consistency for Annotation-Free Nuclei Segmentation in Fluorescence Microscopy.
CoRR
Jonas Utz, Stefan Vocht, Anne Tjorven Buessen, Dennis Possart, Fabian Wagner, Mareike Thies, Mingxuan Gu, Stefan Uderhardt, Katharina Breininger
2025 J jnl
DiffRenderGAN: Addressing Training Data Scarcity in Deep Segmentation Networks for Quantitative Nanomaterial Analysis through Differentiable Rendering and Generative Modelling.
CoRR
Dennis Possart, Leonid Mill, Florian Vollnhals, Tor Hildebrand, Peter Suter, Mathis Hoffmann, Jonas Utz, Daniel Augsburger, Mareike Thies, Mingxuan Wu, Fabian Wagner, George Sarau, Silke H. Christiansen, Katharina Breininger
2025 — conf
FIND-Net - Fourier-Integrated Network with Dictionary Kernels for Metal Artifact Reduction.
MICCAI (13)
Farid Tasharofi, Fuxin Fan, Melika Qahqaie, Mareike Thies, Andreas K. Maier
2025 J jnl
FIND-Net - Fourier-Integrated Network with Dictionary Kernels for Metal Artifact Reduction.
CoRR
Farid Tasharofi, Fuxin Fan, Melika Qahqaie, Mareike Thies, Andreas K. Maier
2025 — conf
Learned Shift-variant CBCT Reconstruction Weights for Non-continuous Trajectories.
Bildverarbeitung für die Medizin
Chengze Ye, Linda-Sophie Schneider, Yipeng Sun, Mareike Thies, Andreas K. Maier
2025 J jnl
Unsupervised motion artifacts reduction for cone-beam CT via enhanced landmark detection.
Expert Syst. Appl.
Thanaporn Viriyasaranon, Serie Ma, Mareike Thies, Andreas Maier, Jang-Hwan Choi
2024 J jnl
A gradient-based approach to fast and accurate head motion compensation in cone-beam CT.
CoRR
Mareike Thies, Fabian Wagner, Noah Maul, Haijun Yu, Manuela Meier, Linda-Sophie Schneider, Mingxuan Gu, Siyuan Mei, Lukas Folle, Andreas K. Maier
2024 — conf
Abstract: Enabling Geometry Aware Learning Through Differentiable Epipolar View Translation.
Bildverarbeitung für die Medizin
Maximilian Rohleder, Charlotte Pradel, Fabian Wagner, Mareike Thies, Noah Maul, Felix Denzinger, Andreas K. Maier, Björn W. Kreher
2024 — conf
Abstract: Gradient-based Geometry Learning for Fan-beam CT Reconstruction.
Bildverarbeitung für die Medizin
Mareike Thies, Fabian Wagner, Noah Maul, Lukas Folle, Manuela Meier, Maximilian Rohleder, Linda-Sophie Schneider, Laura Pfaff, Mingxuan Gu, Jonas Utz, Felix Denzinger, Michael Manhart, Andreas K. Maier
2024 — conf
Abstract: Robust Multi-contrast MRI Denoising using Trainable Bilateral Filters without Noise-free Targets.
Bildverarbeitung für die Medizin
Laura Pfaff, Fabian Wagner, Julian Hossbach, Elisabeth Preuhs, Mareike Thies, Felix Denzinger, Dominik Nickel, Tobias Würfl, Andreas K. Maier
2024 — conf
Abstract: Self-supervised CT Dual Domain Denoising using Low-parameter Models.
Bildverarbeitung für die Medizin
Fabian Wagner, Mareike Thies, Laura Pfaff, Oliver Aust, Sabrina Pechmann, Daniela Weidner, Noah Maul, Maximilian Rohleder, Mingxuan Gu, Jonas Utz, Felix Denzinger, Andreas K. Maier
2024 — conf
Abstract: Transient Hemodynamics Prediction using an Efficient Octree-based Deep Learning Model.
Bildverarbeitung für die Medizin
Noah Maul, Katharina Zinn, Fabian Wagner, Mareike Thies, Maximilian Rohleder, Laura Pfaff, Markus Kowarschik, Annette Birkhold, Andreas K. Maier
2024 J jnl
An interactive task-based method for the avoidance of metal artifacts in CBCT.
Int. J. Comput. Assist. Radiol. Surg.
Maximilian Rohleder, Mareike Thies, Sophie Riedl, Benno Bullert, Jula Gierse, Maxim Privalov, Eric Mandelka, Sven Yves Vetter, Andreas K. Maier, Björn W. Kreher
2024 J jnl
DRACO: Differentiable Reconstruction for Arbitrary CBCT Orbits.
CoRR
Chengze Ye, Linda-Sophie Schneider, Yipeng Sun, Mareike Thies, Siyuan Mei, Andreas Maier
2024 J jnl
Data-Driven Filter Design in FBP: Transforming CT Reconstruction with Trainable Fourier Series.
CoRR
Yipeng Sun, Linda-Sophie Schneider, Fuxin Fan, Mareike Thies, Mingxuan Gu, Siyuan Mei, Yuzhong Zhou, Siming Bayer, Andreas K. Maier
2024 J jnl
Differentiable Score-Based Likelihoods: Learning CT Motion Compensation From Clean Images.
CoRR
Mareike Thies, Noah Maul, Siyuan Mei, Laura Pfaff, Nastassia Vysotskaya, Mingxuan Gu, Jonas Utz, Dennis Possart, Lukas Folle, Fabian Wagner, Andreas Maier
2024 — conf
Differentiable Score-Based Likelihoods: Learning CT Motion Compensation from Clean Images.
MICCAI (7)
Mareike Thies, Noah Maul, Siyuan Mei, Laura Pfaff, Nastassia Vysotskaya, Mingxuan Gu, Jonas Utz, Dennis Possart, Lukas Folle, Fabian Wagner, Andreas K. Maier
2024 J jnl
EAGLE: An Edge-Aware Gradient Localization Enhanced Loss for CT Image Reconstruction.
CoRR
Yipeng Sun, Yixing Huang, Linda-Sophie Schneider, Mareike Thies, Mingxuan Gu, Siyuan Mei, Siming Bayer, Andreas K. Maier
2024 — conf
Exploring Epipolar Consistency Conditions.
Bildverarbeitung für die Medizin
Mareike Thies, Fabian Wagner, Mingxuan Gu, Siyuan Mei, Yixing Huang, Sabrina Pechmann, Oliver Aust, Daniela Weidner, Georgiana Neag, Stefan Uderhardt, Georg Schett, Silke H. Christiansen, Andreas K. Maier
2024 J jnl
Multiple Source Translation Micro-CT Improves Both Field-of-View and Spatial Resolution.
IEEE Trans. Instrum. Meas.
Haijun Yu, Song Ni, Mareike Thies, Fabian Wagner, Yixing Huang, Fengling Liu, Andreas K. Maier
2024 — conf
Neural Network-based Sinogram Upsampling in Real-measured CT Reconstruction.
Bildverarbeitung für die Medizin
Lena Augustin, Fabian Wagner, Mareike Thies, Andreas K. Maier
2024 — conf
No-New-Denoiser: A Critical Analysis of Diffusion Models for Medical Image Denoising.
MICCAI (10)
Laura Pfaff, Fabian Wagner, Nastassia Vysotskaya, Mareike Thies, Noah Maul, Siyuan Mei, Tobias Würfl, Andreas K. Maier
2024 J jnl
On the Influence of Smoothness Constraints in Computed Tomography Motion Compensation.
CoRR
Mareike Thies, Fabian Wagner, Noah Maul, Siyuan Mei, Mingxuan Gu, Laura Pfaff, Nastassia Vysotskaya, Haijun Yu, Andreas Maier
2024 J jnl
Physics-Informed Learning for Time-Resolved Angiographic Contrast Agent Concentration Reconstruction.
CoRR
Noah Maul, Annette Birkhold, Fabian Wagner, Mareike Thies, Maximilian Rohleder, Philipp Berg, Markus Kowarschik, Andreas K. Maier
2024 J jnl
Reference-Free Multi-Modality Volume Registration of X-Ray Microscopy and Light-Sheet Fluorescence Microscopy.
CoRR
Siyuan Mei, Fuxin Fan, Mareike Thies, Mingxuan Gu, Fabian Wagner, Oliver Aust, Ina Erceg, Zeynab Mirzaei, Georgiana Neag, Yipeng Sun, Yixing Huang, Andreas Maier
2024 J jnl
Segmentation-Guided Knee Radiograph Generation using Conditional Diffusion Models.
CoRR
Siyuan Mei, Fuxin Fan, Fabian Wagner, Mareike Thies, Mingxuan Gu, Yipeng Sun, Andreas K. Maier
2024 J jnl
Simulation-informed learning for time-resolved angiographic contrast agent concentration reconstruction.
Comput. Biol. Medicine
Noah Maul, Annette Birkhold, Fabian Wagner, Mareike Thies, Maximilian Rohleder, Philipp Berg, Markus Kowarschik, Andreas K. Maier
2024 — conf
Unsupervised Domain Adaptation Using Soft-Labeled Contrastive Learning with Reversed Monte Carlo Method for Cardiac Image Segmentation.
MICCAI (9)
Mingxuan Gu, Mareike Thies, Siyuan Mei, Fabian Wagner, Mingcheng Fan, Yipeng Sun, Zhaoya Pan, Sulaiman Vesal, Ronak Kosti, Dennis Possart, Jonas Utz, Andreas K. Maier
2024 — conf
Virtual DSA for Learning Contrast Agent Dynamics in Projection Space.
SWITCH/ISLES@MICCAI
Noah Maul, Annette Birkhold, Mareike Thies, Nastassia Vysotskaya, Fabian Wagner, Laura Pfaff, Markus Kowarschik, Andreas K. Maier
2023 — conf
Abstract: Trainable Joint Bilateral Filters for Enhanced Prediction Stability in Low-dose CT.
Bildverarbeitung für die Medizin
Fabian Wagner, Mareike Thies, Felix Denzinger, Mingxuan Gu, Mayank Patwari, Stefan B. Ploner, Noah Maul, Laura Pfaff, Yixing Huang, Andreas K. Maier
2023 — conf
Cavity Segmentation in X-ray Microscopy Scans of Mouse Tibiae.
Bildverarbeitung für die Medizin
Mingxuan Gu, Mareike Thies, Fabian Wagner, Sabrina Pechmann, Oliver Aust, Daniela Weidner, Georgiana Neag, Zhaoya Pan, Jonas Utz, Georg Schett, Silke H. Christiansen, Stefan Uderhardt, Andreas K. Maier
2023 — conf
Deepnapsi: Deep Learning for Nail Psoriasis Prediction.
ISBI
Lukas Folle, Pauline Fenzl, Filippo Fagni, Mareike Thies, Vincent Christlein, Christine Meder, Michael Sticherling, David Simon, Georg Schett, Andreas Maier, Arnd Kleyer
2023 — conf
Enabling Geometry Aware Learning Through Differentiable Epipolar View Translation.
MICCAI (3)
Maximilian Rohleder, Charlotte Pradel, Fabian Wagner, Mareike Thies, Noah Maul, Felix Denzinger, Andreas K. Maier, Björn W. Kreher
2023 — conf
Focus on Content not Noise: Improving Image Generation for Nuclei Segmentation by Suppressing Steganography in CycleGAN.
ICCV (Workshops)
Jonas Utz, Tobias Weise, Maja Schlereth, Fabian Wagner, Mareike Thies, Mingxuan Gu, Stefan Uderhardt, Katharina Breininger
2023 J jnl
Focus on Content not Noise: Improving Image Generation for Nuclei Segmentation by Suppressing Steganography in CycleGAN.
CoRR
Jonas Utz, Tobias Weise, Maja Schlereth, Fabian Wagner, Mareike Thies, Mingxuan Gu, Stefan Uderhardt, Katharina Breininger
2023 J jnl
Geometric Constraints Enable Self-Supervised Sinogram Inpainting in Sparse-View Tomography.
CoRR
Fabian Wagner, Mareike Thies, Noah Maul, Laura Pfaff, Oliver Aust, Sabrina Pechmann, Christopher Syben, Andreas K. Maier
2023 — conf
McLabel - A Local Thresholding Tool for Efficient Semi-automatic Labelling of Cells in Fluorescence Microscopy.
Bildverarbeitung für die Medizin
Jonas Utz, Maja Schlereth, Jingna Qiu, Mareike Thies, Fabian Wagner, Oumaima B. Brahim, Mingxuan Gu, Stefan Uderhardt, Katharina Breininger
2023 J jnl
Motion Compensation via Epipolar Consistency for In-Vivo X-Ray Microscopy.
CoRR
Mareike Thies, Fabian Wagner, Mingxuan Gu, Yixing Huang, Sabrina Pechmann, Oliver Aust, Daniela Weidner, Georgiana Neag, Stefan Uderhardt, Georg Schett, Silke H. Christiansen, Andreas K. Maier
2023 — conf
Noise2Contrast: Multi-contrast Fusion Enables Self-supervised Tomographic Image Denoising.
IPMI
Fabian Wagner, Mareike Thies, Laura Pfaff, Noah Maul, Sabrina Pechmann, Mingxuan Gu, Jonas Utz, Oliver Aust, Daniela Weidner, Georgiana Neag, Stefan Uderhardt, Jang Hwan Choi, Andreas Maier
2023 — conf
On the Benefit of Dual-Domain Denoising in a Self-Supervised Low-Dose CT Setting.
ISBI
Fabian Wagner, Mareike Thies, Laura Pfaff, Oliver Aust, Sabrina Pechmann, Daniela Weidner, Noah Maul, Maximilian Rohleder, Mingxuan Gu, Jonas Utz, Felix Denzinger, Andreas Maier
2023 J jnl
Optimizing CT Scan Geometries With and Without Gradients.
CoRR
Mareike Thies, Fabian Wagner, Noah Maul, Laura Pfaff, Linda-Sophie Schneider, Christopher Syben, Andreas K. Maier
2023 — conf
Robust Multi-Contrast Mri Denoising Using Trainable Bilateral Filters Without Noise-Free Targets.
ISBI
Laura Pfaff, Fabian Wagner, Julian Hossbach, Elisabeth Preuhs, Noah Maul, Mareike Thies, Felix Denzinger, Dominik Nickel, Tobias Würfl, Andreas Maier
2023 J jnl
Task-based Generation of Optimized Projection Sets using Differentiable Ranking.
CoRR
Linda-Sophie Schneider, Mareike Thies, Christopher Syben, Richard Schielein, Mathias Unberath, Andreas K. Maier
2023 — conf
Transient Hemodynamics Prediction Using an Efficient Octree-Based Deep Learning Model.
IPMI
Noah Maul, Katharina Zinn, Fabian Wagner, Mareike Thies, Maximilian Rohleder, Laura Pfaff, Markus Kowarschik, Annette Birkhold, Andreas K. Maier
2023 J jnl
Transient Hemodynamics Prediction Using an Efficient Octree-Based Deep Learning Model.
CoRR
Noah Maul, Katharina Zinn, Fabian Wagner, Mareike Thies, Maximilian Rohleder, Laura Pfaff, Markus Kowarschik, Annette Birkhold, Andreas K. Maier
2023 — conf
Unsupervised Super Resolution in X-ray Microscopy using a Cycle-consistent Generative Model.
Bildverarbeitung für die Medizin
Adarsh Raghunath, Fabian Wagner, Mareike Thies, Mingxuan Gu, Sabrina Pechmann, Oliver Aust, Daniela Weidner, Georgiana Neag, Georg Schett, Silke H. Christiansen, Stefan Uderhardt, Andreas K. Maier
2022 J jnl
ConFUDA: Contrastive Fewshot Unsupervised Domain Adaptation for Medical Image Segmentation.
CoRR
Mingxuan Gu, Sulaiman Vesal, Mareike Thies, Zhaoya Pan, Fabian Wagner, Mirabela Rusu, Andreas K. Maier, Ronak Kosti
2022 J jnl
Gradient-Based Geometry Learning for Fan-Beam CT Reconstruction.
CoRR
Mareike Thies, Fabian Wagner, Noah Maul, Lukas Folle, Manuela Meier, Maximilian Rohleder, Linda-Sophie Schneider, Laura Pfaff, Mingxuan Gu, Jonas Utz, Felix Denzinger, Michael Manhart, Andreas K. Maier
2022 J jnl
Learned Cone-Beam CT Reconstruction Using Neural Ordinary Differential Equations.
CoRR
Mareike Thies, Fabian Wagner, Mingxuan Gu, Lukas Folle, Lina Felsner, Andreas K. Maier
2022 — conf
Monte Carlo Dose Simulation for In-Vivo X-Ray Nanoscopy.
Bildverarbeitung für die Medizin
Fabian Wagner, Mareike Thies, Marek Karolczak, Sabrina Pechmann, Yixing Huang, Mingxuan Gu, Lasse Kling, Daniela Weidner, Oliver Aust, Georg Schett, Silke H. Christiansen, Andreas K. Maier
2022 J jnl
Noise2Contrast: Multi-Contrast Fusion Enables Self-Supervised Tomographic Image Denoising.
CoRR
Fabian Wagner, Mareike Thies, Laura Pfaff, Noah Maul, Sabrina Pechmann, Mingxuan Gu, Jonas Utz, Oliver Aust, Daniela Weidner, Georgiana Neag, Stefan Uderhardt, Jang Hwan Choi, Andreas K. Maier
2022 J jnl
On the Benefit of Dual-domain Denoising in a Self-supervised Low-dose CT Setting.
CoRR
Fabian Wagner, Mareike Thies, Laura Pfaff, Oliver Aust, Sabrina Pechmann, Daniela Weidner, Noah Maul, Maximilian Rohleder, Mingxuan Gu, Jonas Utz, Felix Denzinger, Andreas K. Maier
2022 — conf
Tibia Cortical Bone Segmentation in Micro-CT and X-ray Microscopy Data Using a Single Neural Network.
Bildverarbeitung für die Medizin
Oliver Aust, Mareike Thies, DanielaWeidner, Fabian Wagner, Sabrina Pechmann, Leonid Mill, Darja Andreev, Ippei Miyagawa, Gerhard Krönke, Silke H. Christiansen, Stefan Uderhardt, Andreas K. Maier, Anika Grüneboom
2022 J jnl
Trainable Joint Bilateral Filters for Enhanced Prediction Stability in Low-dose CT.
CoRR
Fabian Wagner, Mareike Thies, Felix Denzinger, Mingxuan Gu, Mayank Patwari, Stefan B. Ploner, Noah Maul, Laura Pfaff, Yixing Huang, Andreas K. Maier
2022 J jnl
Ultra Low-Parameter Denoising: Trainable Bilateral Filter Layers in Computed Tomography.
CoRR
Fabian Wagner, Mareike Thies, Mingxuan Gu, Yixing Huang, Sabrina Pechmann, Mayank Patwari, Stefan B. Ploner, Oliver Aust, Stefan Uderhardt, Georg Schett, Silke H. Christiansen, Andreas K. Maier
2021 J jnl
Task-Specific Trajectory Optimisation for Twin-Robotic X-Ray Tomography.
IEEE Trans. Computational Imaging
Gabriel Herl, Jochen Hiller, Mareike Thies, Jan-Nico Zaech, Mathias Unberath, Andreas K. Maier
2020 J jnl
A County-level Dataset for Informing the United States' Response to COVID-19.
CoRR
Benjamin D. Killeen, Jie Ying Wu, Kinjal Shah, Anna Zapaishchykova, Philipp Nikutta, Aniruddha Tamhane, Shreya Chakraborty, Jinchi Wei, Tiger Gao, Mareike Thies, Mathias Unberath
2020 J jnl
A Learning-based Method for Online Adjustment of C-arm Cone-Beam CT Source Trajectories for Artifact Avoidance.
CoRR
Mareike Thies, Jan-Nico Zäch, Cong Gao, Russell H. Taylor, Nassir Navab, Andreas K. Maier, Mathias Unberath
2020 J jnl
A learning-based method for online adjustment of C-arm Cone-beam CT source trajectories for artifact avoidance.
Int. J. Comput. Assist. Radiol. Surg.
Mareike Thies, Jan-Nico Zäch, Cong Gao, Russell H. Taylor, Nassir Navab, Andreas Maier, Mathias Unberath