Marcus Weber

33 papers Journal 27Unranked 5
YearRankTypeTitle / Venue / Authors
2025 J jnl
Efficient construction of Markov state models for stochastic gene regulatory networks by domain decomposition.
BMC Bioinform.
Maryam Yousefian, Anna-Simone Frank, Marcus Weber, Susanna Röblitz
2025 — conf
Exploring Metastable Dynamics of Gene Regulatory Networks with ISOKANN.
CMSB
Maryam Yousefian, Luca Donati, Alexander Sikorski, Marcus Weber, Susanna Röblitz
2024 J jnl
A case study of the use of logical data analysis in the Workmen's Village in Tell el-Amarna, Egypt.
it Inf. Technol.
Sarah M. Klasse, Marcus Weber
2024 — conf
Towards a FAIR Documentation of Workflows and Models in Applied Mathematics.
ICMS
Marco Reidelbach, Björn Schembera, Marcus Weber
2024 J jnl
Towards a FAIR Documentation of Workflows and Models in Applied Mathematics.
CoRR
Marco Reidelbach, Björn Schembera, Marcus Weber
2023 — conf
MaRDMO Plugin Document and Retrieve Workflows Using the MaRDI Portal.
CoRDI
Marco Reidelbach, Eloi Ferrer, Marcus Weber
2023 J jnl
Novel multi-objective affinity approach allows to identify pH-specific μ-opioid receptor agonists.
J. Cheminformatics
Christopher Secker, Konstantin Fackeldey, Marcus Weber, Sourav Ray, Christoph Gorgulla, Christof Schütte
2022 J jnl
SepFree NMF: A Toolbox for Analyzing the Kinetics of Sequential Spectroscopic Data.
Algorithms
Renata Sechi, Konstantin Fackeldey, Surahit Chewle, Marcus Weber
2022 J jnl
The Mathematics of Comparing Objects.
CoRR
Marcus Weber, Konstantin Fackeldey
2021 J jnl
Computing the Minimal Rebinding Effect for NonReversible Processes.
Multiscale Model. Simul.
Susanne Röhl, Marcus Weber, Konstantin Fackeldey
2021 J jnl
Estimation of the Koopman Generator by Newton's Extrapolation.
Multiscale Model. Simul.
Renata Sechi, Alexander Sikorski, Marcus Weber
2020 J jnl
Analyzing Raman Spectral Data without Separability Assumption.
CoRR
Konstantin Fackeldey, Jonas Röhm, Amir Niknejad, Surahit Chewle, Marcus Weber
2020 J jnl
Computing the minimal rebinding effect for non-reversible processes.
CoRR
Susanne Röhl, Marcus Weber, Konstantin Fackeldey
2020 J jnl
The Complexity of Comparative Text Analysis - "The Gardener is always the Murderer" says the Fourth Machine.
CoRR
Marcus Weber, Konstantin Fackeldey
2019 J jnl
Modeling of Multivalent Ligand-Receptor Binding Measured by kinITC.
Comput.
Franziska Erlekam, Sinaida Igde, Susanna Röblitz, Laura Hartmann, Marcus Weber
2018 J jnl
Implications of PCCA+ in Molecular Simulation.
Comput.
Marcus Weber
2018 J jnl
Mixed-Integer Programming for Cycle Detection in Nonreversible Markov Processes.
Multiscale Model. Simul.
Jakob Witzig, Isabel Beckenbach, Leon Eifler, Konstantin Fackeldey, Ambros M. Gleixner, Andreas Grever, Marcus Weber
2016 J jnl
Finding Dominant Structures of Nonreversible Markov Processes.
Multiscale Model. Simul.
Natasa Djurdjevac Conrad, Marcus Weber, Christof Schütte
2016 J jnl
Mixed-Integer Programming for Cycle Detection in Non-reversible Markov Processes.
CoRR
Isabel Beckenbach, Leon Eifler, Konstantin Fackeldey, Ambros M. Gleixner, Andreas Grever, Marcus Weber, Jakob Witzig
2014 J jnl
Applications of the Cross-Entropy Method to Importance Sampling and Optimal Control of Diffusions.
SIAM J. Sci. Comput.
Wei Zhang, Han Wang, Carsten Hartmann, Marcus Weber, Christof Schütte
2014 J jnl
Computing the Minimal Rebinding Effect Included in a Given Kinetics.
Multiscale Model. Simul.
Marcus Weber, Konstantin Fackeldey
2014 J jnl
Investigation of the Ergopeptide Epimerization Process.
Comput.
Karsten Andrae, Stefan Merkel, Vedat Durmaz, Konstantin Fackeldey, Robert Köppen, Marcus Weber, Matthias Koch
2013 J jnl
A Square Root Approximation of Transition Rates for a Markov State Model.
SIAM J. Matrix Anal. Appl.
Han Cheng Lie, Konstantin Fackeldey, Marcus Weber
2013 — ch.
Adaptive Spectral Clustering in Molecular Simulation.
Classification and Data Mining
Marcus Weber
2013 J jnl
Fuzzy spectral clustering by PCCA+: application to Markov state models and data classification.
Adv. Data Anal. Classif.
Susanna Röblitz, Marcus Weber
2013 J jnl
Hands-off Linear Interaction Energy Approach to Binding Mode and Affinity Estimation of Estrogens.
J. Chem. Inf. Model.
Vedat Durmaz, Sebastian Schmidt, Peggy Sabri, Christian Piechotta, Marcus Weber
2011 J jnl
Towards a rational spacer design for bivalent inhibition of estrogen receptor.
J. Comput. Aided Mol. Des.
Alexander Bujotzek, Min Shan, Rainer Haag, Marcus Weber
2009 J jnl
Efficient Simulation of ligand-receptor Binding Processes Using the Conformation Dynamics Approach.
J. Bioinform. Comput. Biol.
Alexander Bujotzek, Marcus Weber
2009 J jnl
Monte Carlo sampling of Wigner functions and surface hopping quantum dynamics.
J. Comput. Phys.
Susanna Kube, Caroline Lasser, Marcus Weber
2008 J jnl
Selection and flexible optimization of binding modes from conformation ensembles.
Biosyst.
Aysam Gürler, Sebastian Moll, Marcus Weber, Holger Meyer, Frank Cordes
2007 J jnl
Stable Computation of Probability Densities for Metastable Dynamical Systems.
Multiscale Model. Simul.
Marcus Weber, Susanna Kube, Lionel Walter, Peter Deuflhard
2005 — conf
An Indicator for the Number of Clusters: Using a Linear Map to Simplex Structure.
GfKl
Marcus Weber, Wasinee Rungsarityotin, Alexander Schliep
2005 — conf
Robust Perron Cluster Analysis for Various Applications in Computational Life Science.
CompLife
Marcus Weber, Susanna Kube