Marco Salemi

21 papers B 1Journal 13Unranked 7
YearRankTypeTitle / Venue / Authors
2026 J jnl
CholeraSeq: a comprehensive genomic pipeline for cholera surveillance and near real-time outbreak investigation.
Bioinform.
Massimiliano S. Tagliamonte, Abhinav Sharma, Alberto Riva, Monika Moir, Marco Salemi, Cheryl Baxter, Tulio de Oliveira, Carla Mavian, Eduan Wilkinson
2025 J jnl
SARITA: a large language model for generating the S1 subunit of the SARS-CoV-2 spike protein.
Briefings Bioinform.
Simone Rancati, Giovanna Nicora, Laura Bergomi, Tommaso Mario Buonocore, Daniel M. Czyz, Enea Parimbelli, Riccardo Bellazzi, Marco Salemi, Mattia Prosperi, Simone Marini
2025 — conf
What to consider when developing a new molecular HIV surveillance tool: Perspectives of key stakeholders working in HIV prevention and treatment.
ICHI
Shantrel S. Canidate, Hannah R. Gracy, Sean McIntosh, Yiyang Liu, Rebecca Fisk-Hoffman, Shannon Rich, Carla Mavian, Robert L. Cook, Mattia Prosperi, Marco Salemi
2024 J jnl
DeepDynaForecast: Phylogenetic-informed graph deep learning for epidemic transmission dynamic prediction.
PLoS Comput. Biol.
Chaoyue Sun, Ruogu Fang, Marco Salemi, Mattia Prosperi, Brittany Rife Magalis
2024 J jnl
Forecasting dominance of SARS-CoV-2 lineages by anomaly detection using deep AutoEncoders.
Briefings Bioinform.
Simone Rancati, Giovanna Nicora, Mattia Prosperi, Riccardo Bellazzi, Marco Salemi, Simone Marini
2024 — conf
Learning on Forecasting HIV Epidemic Based on Individuals' Contact Networks.
BIOSTEC (2)
Chaoyue Sun, Yiyang Liu, Christina Parisi, Rebecca Fisk-Hoffman, Marco Salemi, Ruogu Fang, Brandi Danforth, Mattia Prosperi, Simone Marini
2024 — conf
Sequencing Efforts and Epidemiological Trends: Analyzing SARS-CoV-2 Dynamics Across European Nations.
BIBM
Simone Rancati, Daniele Pala, Simone Marini, Marco Salemi, Riccardo Bellazzi, Giovanna Nicora
2023 J jnl
ARCA: the interactive database for arbovirus reported cases in the Americas.
BMC Bioinform.
Maria V. Meneses, Alberto Riva, Marco Salemi, Carla Mavian
2022 — conf
Dynamic Prediction of Non-Neutral SARS-Cov-2 Variants Using Incremental Machine Learning.
MIE
Giovanna Nicora, Simone Marini, Marco Salemi, Riccardo Bellazzi
2022 J jnl
Optimizing viral genome subsampling by genetic diversity and temporal distribution (TARDiS) for phylogenetics.
Bioinform.
Simone Marini, Carla Mavian, Alberto Riva, Mattia Prosperi, Marco Salemi, Brittany Rife Magalis
2022 — conf
Transmission cluster characteristics of global, regional, and lineage-specific SARS-CoV-2 phylogenies.
BIBM
Mattia Prosperi, Brittany Rife Magalis, Simone Marini, Marco Salemi
2021 — conf
Causal AI with Real World Data: Do Statins Protect from Alzheimer's Disease Onset?
ICMHI
Mattia Prosperi, Shantanu Ghosh, Zhaoyi Chen, Marco Salemi, Tianchen Lyu, Jinying Zhao, Jiang Bian
2020 J jnl
New Insights into the Effect of Residue Mutations on the Rotavirus VP1 Function Using Molecular Dynamic Simulations.
J. Chem. Inf. Model.
Nabil Abid, Daniele Pietrucci, Marco Salemi, Giovanni Chillemi
2019 — conf
Unexpected Predictors of Antibiotic Resistance in Housekeeping Genes of Staphylococcus Aureus.
BCB
Mattia Prosperi, Taj Azarian, Judith A. Johnson, Marco Salemi, Franco Milicchio, Marco Oliva
2015 J jnl
Identification of dual-tropic HIV-1 using evolved neural networks.
Biosyst.
Gary B. Fogel, Susanna L. Lamers, Enoch S. Liu, Marco Salemi, Michael S. McGrath
2014 J jnl
Baseline CD4
PLoS Comput. Biol.
Melissa M. Norström, Nazle M. Veras, Wei Huang, Mattia C. F. Prosperi, Jennifer Cook, Wendy Hartogensis, Frederick M. Hecht, Annika C. Karlsoon, Marco Salemi
2014 B conf
Evolved neural networks for HIV-1 co-receptor identification.
IEEE Congress on Evolutionary Computation
Gary B. Fogel, Enoch S. Liu, Marco Salemi, Susanna L. Lamers, Michael S. McGrath
2014 J jnl
HIV-associated neuropathogenesis: A systems biology perspective for modeling and therapy.
Biosyst.
Susanna L. Lamers, Gary B. Fogel, David J. Nolan, Michael S. McGrath, Marco Salemi
2012 J jnl
QuRe: software for viral quasispecies reconstruction from next-generation sequencing data.
Bioinform.
Mattia C. F. Prosperi, Marco Salemi
2008 J jnl
Prediction of R5, X4, and R5X4 HIV-1 Coreceptor Usage with Evolved Neural Networks.
IEEE ACM Trans. Comput. Biol. Bioinform.
Susanna L. Lamers, Marco Salemi, Michael S. McGrath, Gary B. Fogel
2004 J jnl
HIVbase: a PC/Windows-based software offering storage and querying power for locally held HIV-1 genetic, experimental and clinical data.
Bioinform.
Susanna L. Lamers, Scott Beason, Luke Dunlap, Robert Compton, Marco Salemi