Marco Previtali

27 papers B 1C 3Journal 18Unranked 2
YearRankTypeTitle / Venue / Authors
2022 J jnl
Numeric Lyndon-based feature embedding of sequencing reads for machine learning approaches.
CoRR
Paola Bonizzoni, Matteo Costantini, Clelia De Felice, Alessia Petescia, Yuri Pirola, Marco Previtali, Raffaella Rizzi, Jens Stoye, Rocco Zaccagnino, Rosalba Zizza
2022 J jnl
Numeric Lyndon-based feature embedding of sequencing reads for machine learning approaches.
Inf. Sci.
Paola Bonizzoni, Matteo Costantini, Clelia De Felice, Alessia Petescia, Yuri Pirola, Marco Previtali, Raffaella Rizzi, Jens Stoye, Rocco Zaccagnino, Rosalba Zizza
2021 J jnl
Computing the multi-string BWT and LCP array in external memory.
Theor. Comput. Sci.
Paola Bonizzoni, Gianluca Della Vedova, Yuri Pirola, Marco Previtali, Raffaella Rizzi
2021 J jnl
MALVIRUS: an integrated application for viral variant analysis.
BMC Bioinform.
Simone Ciccolella, Luca Denti, Paola Bonizzoni, Gianluca Della Vedova, Yuri Pirola, Marco Previtali
2021 J jnl
Shark: fishing relevant reads in an RNA-Seq sample.
Bioinform.
Luca Denti, Yuri Pirola, Marco Previtali, Tamara Ceccato, Gianluca Della Vedova, Raffaella Rizzi, Paola Bonizzoni
2021 J jnl
Triplet-based similarity score for fully multilabeled trees with poly-occurring labels.
Bioinform.
Simone Ciccolella, Giulia Bernardini, Luca Denti, Paola Bonizzoni, Marco Previtali, Gianluca Della Vedova
2019 — ch.
Graph Theory and Definitions.
Encyclopedia of Bioinformatics and Computational Biology (1)
Stefano Beretta, Luca Denti, Marco Previtali
2019 J jnl
Multithread Multistring Burrows-Wheeler Transform and Longest Common Prefix Array.
J. Comput. Biol.
Paola Bonizzoni, Gianluca Della Vedova, Yuri Pirola, Marco Previtali, Raffaella Rizzi
2019 — ch.
Network Properties.
Encyclopedia of Bioinformatics and Computational Biology (1)
Stefano Beretta, Luca Denti, Marco Previtali
2019 J jnl
Overlap graphs and de Bruijn graphs: data structures for de novo genome assembly in the big data era.
Quant. Biol.
Raffaella Rizzi, Stefano Beretta, Murray Patterson, Yuri Pirola, Marco Previtali, Gianluca Della Vedova, Paola Bonizzoni
2018 J jnl
ASGAL: aligning RNA-Seq data to a splicing graph to detect novel alternative splicing events.
BMC Bioinform.
Luca Denti, Raffaella Rizzi, Stefano Beretta, Gianluca Della Vedova, Marco Previtali, Paola Bonizzoni
2018 J jnl
Bidirectional Variable-Order de Bruijn Graphs.
Int. J. Found. Comput. Sci.
Djamal Belazzougui, Travis Gagie, Veli Mäkinen, Marco Previtali, Simon J. Puglisi
2018 C conf
Divide and Conquer Computation of the Multi-string BWT and LCP Array.
CiE
Paola Bonizzoni, Gianluca Della Vedova, Serena Nicosia, Yuri Pirola, Marco Previtali, Raffaella Rizzi
2017 J jnl
An External-Memory Algorithm for String Graph Construction.
Algorithmica
Paola Bonizzoni, Gianluca Della Vedova, Yuri Pirola, Marco Previtali, Raffaella Rizzi
2017 J jnl
Computing the BWT and LCP array of a Set of Strings in External Memory.
CoRR
Paola Bonizzoni, Gianluca Della Vedova, Yuri Pirola, Marco Previtali, Raffaella Rizzi
2017 J jnl
FSG: Fast String Graph Construction for De Novo Assembly.
J. Comput. Biol.
Paola Bonizzoni, Gianluca Della Vedova, Yuri Pirola, Marco Previtali, Raffaella Rizzi
2017 — conf
Mapping RNA-seq Data to a Transcript Graph via Approximate Pattern Matching to a Hypertext.
AlCoB
Stefano Beretta, Paola Bonizzoni, Luca Denti, Marco Previtali, Raffaella Rizzi
2017 — —
Self-indexing for de novo assembly.
Marco Previtali
2016 J jnl
A New Lightweight Algorithm to compute the BWT and the LCP array of a Set of Strings.
CoRR
Paola Bonizzoni, Gianluca Della Vedova, Serena Nicosia, Marco Previtali, Raffaella Rizzi
2016 B conf
Bidirectional Variable-Order de Bruijn Graphs.
LATIN
Djamal Belazzougui, Travis Gagie, Veli Mäkinen, Marco Previtali, Simon J. Puglisi
2016 — conf
FSG: Fast String Graph Construction for De Novo Assembly of Reads Data.
ISBRA
Paola Bonizzoni, Gianluca Della Vedova, Yuri Pirola, Marco Previtali, Raffaella Rizzi
2016 J jnl
FSG: Fast String Graph Construction for De Novo Assembly of Reads Data.
CoRR
Paola Bonizzoni, Gianluca Della Vedova, Yuri Pirola, Marco Previtali, Raffaella Rizzi
2016 C conf
Fully Dynamic de Bruijn Graphs.
SPIRE
Djamal Belazzougui, Travis Gagie, Veli Mäkinen, Marco Previtali
2016 J jnl
Fully Dynamic de Bruijn Graphs.
CoRR
Djamal Belazzougui, Travis Gagie, Veli Mäkinen, Marco Previtali
2016 J jnl
LSG: An External-Memory Tool to Compute String Graphs for Next-Generation Sequencing Data Assembly.
J. Comput. Biol.
Paola Bonizzoni, Gianluca Della Vedova, Yuri Pirola, Marco Previtali, Raffaella Rizzi
2014 C conf
Constructing String Graphs in External Memory.
WABI
Paola Bonizzoni, Gianluca Della Vedova, Yuri Pirola, Marco Previtali, Raffaella Rizzi
2014 J jnl
Constructing String Graphs in External Memory.
CoRR
Paola Bonizzoni, Gianluca Della Vedova, Yuri Pirola, Marco Previtali, Raffaella Rizzi