Marco Brandizi

17 papers Journal 14Unranked 3
YearRankTypeTitle / Venue / Authors
2025 J jnl
Managing FAIR Knowledge Graphs as Polyglot Data End Points: A Benchmark based on the rdf2pg Framework and Plant Biology Data.
CoRR
Marco Brandizi, Carlos Bobed, Luca Garulli, Arné de Klerk, Keywan Hassani-Pak
2018 — conf
Getting the best of Linked Data and Property Graphs: rdf2neo and the KnetMiner use case.
SWAT4LS
Marco Brandizi, Ajit Singh, Keywan Hassani-Pak
2018 J jnl
Towards FAIRer Biological Knowledge Networks Using a Hybrid Linked Data and Graph Database Approach.
J. Integr. Bioinform.
Marco Brandizi, Ajit Singh, Christopher J. Rawlings, Keywan Hassani-Pak
2017 J jnl
Orchestrating differential data access for translational research: a pilot implementation.
BMC Medical Informatics Decis. Mak.
Marco Brandizi, Olga Melnichuk, Raffael Bild, Florian Kohlmayer, Benedicto Rodriguez-Castro, Helmut Spengler, Klaus A. Kuhn, Wolfgang Kuchinke, Christian Ohmann, Timo Mustonen, Mikael Linden, Tommi H. Nyrönen, Ilkka Lappalainen, Alvis Brazma, Ugis Sarkans
2015 J jnl
ArrayExpress update - simplifying data submissions.
Nucleic Acids Res.
Nikolay Kolesnikov, Emma Hastings, Maria Keays, Olga Melnichuk, Y. Amy Tang, Eleanor Williams, Miroslaw Dylag, Natalja Kurbatova, Marco Brandizi, Tony Burdett, Karyn Megy, Ekaterina Pilicheva, Gabriella Rustici, Andrew Tikhonov, Helen E. Parkinson, Robert Petryszak, Ugis Sarkans, Alvis Brazma
2014 J jnl
The EBI RDF platform: linked open data for the life sciences.
Bioinform.
Simon Jupp, James Malone, Jerven T. Bolleman, Marco Brandizi, Mark Davies, Leyla J. García, Anna Gaulton, Sebastien Gehant, Camille Laibe, Nicole Redaschi, Sarala M. Wimalaratne, Maria Jesus Martin, Nicolas Le Novère, Helen E. Parkinson, Ewan Birney, Andrew M. Jenkinson
2014 J jnl
Updates to BioSamples database at European Bioinformatics Institute.
Nucleic Acids Res.
Adam Faulconbridge, Tony Burdett, Marco Brandizi, Mikhail Gostev, Rui Pedro Pereira, Drashtti Vasant, Ugis Sarkans, Alvis Brazma, Helen E. Parkinson
2013 J jnl
ArrayExpress update - trends in database growth and links to data analysis tools.
Nucleic Acids Res.
Gabriella Rustici, Nikolay Kolesnikov, Marco Brandizi, Tony Burdett, Miroslaw Dylag, Ibrahim Emam, Anna Farne, Emma Hastings, Jon C. Ison, Maria Keays, Natalja Kurbatova, James Malone, Roby Mani, Annalisa Mupo, Rui Pedro Pereira, Ekaterina Pilicheva, Johan Rung, Anjan Sharma, Y. Amy Tang, Tobias Ternent, Andrew Tikhonov, Danielle Welter, Eleanor Williams, Alvis Brazma, Helen E. Parkinson, Ugis Sarkans
2012 J jnl
The BioSample Database (BioSD) at the European Bioinformatics Institute.
Nucleic Acids Res.
Mikhail Gostev, Adam Faulconbridge, Marco Brandizi, Julio Fernandez-Banet, Ugis Sarkans, Alvis Brazma, Helen E. Parkinson
2012 J jnl
graph2tab, a library to convert experimental workflow graphs into tabular formats.
Bioinform.
Marco Brandizi, Natalja Kurbatova, Ugis Sarkans, Philippe Rocca-Serra
2011 J jnl
ArrayExpress update - an archive of microarray and high-throughput sequencing-based functional genomics experiments.
Nucleic Acids Res.
Helen E. Parkinson, Ugis Sarkans, Nikolay Kolesnikov, Niran Abeygunawardena, Tony Burdett, Miroslaw Dylag, Ibrahim Emam, Anna Farne, Emma Hastings, Ele Holloway, Natalja Kurbatova, Margus Lukk, James Malone, Roby Mani, Ekaterina Pilicheva, Gabriella Rustici, Anjan Sharma, Eleanor Williams, Tomasz Adamusiak, Marco Brandizi, Nataliya Sklyar, Alvis Brazma
2011 J jnl
Knowledge sharing and collaboration in translational research, and the DC-THERA Directory.
Briefings Bioinform.
Andrea Splendiani, Michaela Gündel, Jonathan M. Austyn, Duccio Cavalieri, Ciro Scognamiglio, Marco Brandizi
2010 J jnl
ISA software suite: supporting standards-compliant experimental annotation and enabling curation at the community level.
Bioinform.
Philippe Rocca-Serra, Marco Brandizi, Eamonn Maguire, Nataliya Sklyar, Chris F. Taylor, Kimberly Begley, Dawn Field, Stephen C. Harris, Winston Hide, Oliver Hofmann, Steffen Neumann, Peter Sterk, Weida Tong, Susanna-Assunta Sansone
2009 J jnl
ArrayExpress update - from an archive of functional genomics experiments to the atlas of gene expression.
Nucleic Acids Res.
Helen E. Parkinson, Misha Kapushesky, Nikolay Kolesnikov, Gabriella Rustici, Mohammadreza Shojatalab, Niran Abeygunawardena, Hugo Bérubé, Miroslaw Dylag, Ibrahim Emam, Anna Farne, Ele Holloway, Margus Lukk, James Malone, Roby Mani, Ekaterina Pilicheva, Tim F. Rayner, Faisal Ibne Rezwan, Anjan Sharma, Eleanor Williams, Xiangqun Zheng Bradley, Tomasz Adamusiak, Marco Brandizi, Tony Burdett, Richard Coulson, Maria Krestyaninova, Pavel Kurnosov, Eamonn Maguire, Sudeshna Guha Neogi, Philippe Rocca-Serra, Susanna-Assunta Sansone, Nataliya Sklyar, Mengyao Zhao, Ugis Sarkans, Alvis Brazma
2009 — conf
DC-THERA Directory, a Knowledge Management System for the support of the European Dendritic Cell Immunology Community.
SWAT4LS
Marco Brandizi, Michaela Gündel, Ciro Scognamiglio, Andrea Splendiani
2008 — conf
The DC-THERA Directory: A Knowledge Management System to Support Collaboration on Dendritic Cell and Immunology Research.
SWAT4LS
Michaela Gündel, Ciro Scognamiglio, Marco Brandizi, Andrea Splendiani
2007 J jnl
The Genopolis Microarray Database.
BMC Bioinform.
Andrea Splendiani, Marco Brandizi, Gael Even, Ottavio Beretta, Norman Pavelka, Mattia Pelizzola, Manuel Mayhaus, Maria Foti, Giancarlo Mauri, Paola Ricciardi-Castagnoli