Marcelo M. Brigido

24 papers Journal 3Unranked 19

Year	Rank	Type	Title / Venue / Authors
2023	—	`conf`	transcAnalysis: A Snakemake Pipeline for Differential Expression and Post-transcriptional Modification Analysis. BSB Pedro H. A. Barros, Waldeyr M. C. Silva, Marcelo M. Brigido
2021	—	`ed.`	Advances in Bioinformatics and Computational Biology - 14th Brazilian Symposium on Bioinformatics, BSB 2021, Virtual Event, November 22-26, 2021, Proceedings BSB Peter F. Stadler, Maria Emília M. T. Walter, Maribel Hernandez-Rosales, Marcelo M. Brigido
2020	—	`conf`	Anti-CD3 Stimulated T Cell Transcriptome Reveals Novel ncRNAs and Correlates with a Suppressive Profile. BSB Manuela M. do Almo, Isabel G. Sousa, Waldeyr Mendes Cordeiro da Silva, Thomas Gatter, Peter F. Stadler, Steve Hoffmann, Andrea Queiroz Maranhão, Marcelo M. Brigido
2020	—	`conf`	Computational Simulations for Cyclizations Catalyzed by Plant Monoterpene Synthases. BSB Waldeyr Mendes Cordeiro da Silva, Daniela P. de Andrade, Jakob L. Andersen, Maria Emília Telles Walter, Marcelo M. Brigido, Peter F. Stadler, Christoph Flamm
2018	—	`conf`	Graph Databases in Molecular Biology. BSB Waldeyr Mendes Cordeiro da Silva, Polyane Wercelens, Maria Emília M. T. Walter, Maristela Holanda, Marcelo M. Brigido
2018	—	`conf`	Human-Computer Interaction Communicability Evaluation Method Applied to Bioinformatics. WorldCIST (2) Gabriella Esteves, Waldeyr Mendes Cordeiro da Silva, Maria Emília Telles Walter, Marcelo M. Brigido, Fernanda Lima
2018	J	`jnl`	Live neighbor-joining. BMC Bioinform. Guilherme P. Telles, Graziela S. Araújo, Maria Emília Telles Walter, Marcelo M. Brigido, Nalvo F. Almeida
2018	—	`conf`	S^2FS : Single Score Feature Selection Applied to the Problem of Distinguishing Long Non-coding RNAs from Protein Coding Transcripts. BSB Bruno C. Kümmel, André C. P. L. F. de Carvalho, Marcelo M. Brigido, Célia Ghedini Ralha, Maria Emília M. T. Walter
2016	—	`conf`	2Path: A terpenoid metabolic network modeled as graph database. BIBM Waldeyr Mendes Cordeiro da Silva, Danilo Vilar, Daniel S. Souza, Maria Emília Telles Walter, Marcelo M. Brigido, Maristela Holanda
2015	J	`jnl`	Knowledge-based reasoning to annotate noncoding RNA using multi-agent system. J. Bioinform. Comput. Biol. Wosley Arruda, Daniel S. Souza, Célia Ghedini Ralha, Maria Emília M. T. Walter, Tainá Raiol, Marcelo M. Brigido, Peter F. Stadler
2014	—	`conf`	Genome-Wide Identification of Non-coding RNAs in Komagatella pastoris str. GS115. BSB Hugo W. Schneider, Sebastian Bartschat, Gero Doose, Lucas Maciel, Erick Pizani, Marcelo Bassani, Fernando Araripe Torres, Sebastian Will, Tainá Raiol, Marcelo M. Brigido, Maria Emília Telles Walter, Peter F. Stadler
2013	—	`conf`	ncRNA-Agents: A Multiagent System for Non-coding RNA Annotation. BSB Wosley Arruda, Célia Ghedini Ralha, Tainá Raiol, Marcelo M. Brigido, Maria Emília M. T. Walter, Peter F. Stadler
2012	—	`conf`	A Bioconductor Based Workflow for Z-DNA Region Detection and Biological Inference. BSB Halian Vilela, Tainá Raiol, Andrea Queiroz Maranhão, Maria Emília Telles Walter, Marcelo M. Brigido
2011	—	`conf`	A Multi-agent Tool to Annotate Biological Sequences. ICAART (2) Célia Ghedini Ralha, Hugo W. Schneider, Maria Emília M. T. Walter, Marcelo M. Brigido
2011	—	`conf`	Regene: Automatic Construction of a Multiple Component Dirichlet Mixture Priors Covariance Model to Identify Non-coding RNA. ISBRA Felipe Lessa, Daniele Martins Neto, Katia S. Guimarães, Marcelo M. Brigido, Maria Emília Telles Walter
2011	—	`conf`	kGC: Finding Groups of Homologous Genes across Multiple Genomes. BSB Guilherme P. Telles, Nalvo F. Almeida, Marcelo M. Brigido, Paulo Antonio Alvarez, Maria Emília Telles Walter
2009	—	`conf`	SOM-PORTRAIT: Identifying Non-coding RNAs Using Self-Organizing Maps. BSB Tulio C. Silva, Pedro A. Berger, Roberto T. Arrial, Roberto C. Togawa, Marcelo M. Brigido, Maria Emília M. T. Walter
2009	J	`jnl`	Screening non-coding RNAs in transcriptomes from neglected species using PORTRAIT: case study of the pathogenic fungus Paracoccidioides brasiliensis. BMC Bioinform. Roberto T. Arrial, Roberto C. Togawa, Marcelo M. Brigido
2008	—	`conf`	Using BioAgentsfor Supporting Manual Annotation on Genome Sequencing Projects. BSB Célia Ghedini Ralha, Hugo W. Schneider, Lucas O. da Fonseca, Maria Emília M. T. Walter, Marcelo M. Brigido
2007	—	`conf`	A Method for Inferring Biological Functions Using Homologous Genes Among Three Genomes. BSB Daniel A. S. Anjos, Gustavo G. Zerlotini, Guilherme A. Pinto, Maria Emília Telles Walter, Marcelo M. Brigido, Guilherme P. Telles, Carlos Juliano M. Viana, Nalvo F. Almeida
2007	—	`conf`	Outlining a Strategy for Screening Non-coding RNAs on a Transcriptome Through Support Vector Machines. BSB Roberto T. Arrial, Roberto C. Togawa, Marcelo M. Brigido
2005	—	`conf`	A Method for Comparing Three Genomes. BSB Guilherme P. Telles, Marcelo M. Brigido, Nalvo F. Almeida, Carlos Juliano M. Viana, Daniel A. S. Anjos, Maria Emília Telles Walter
2004	—	`conf`	A program to visualize multiple alignments. WOB Daniel A. S. Anjos, Rodrigo Coimbra, Shana Santos, Maria Jose Carvalho, Marcelo M. Brigido, Maria Emília Telles Walter
2004	—	`ed.`	III Brazilian Workshop on Bioinformatics, October 20-22, 2004, Brasília, Distrito Federal, Brazil WOB Natália Florencio Martins, Maria Emília Telles Walter, Guilherme P. Telles, Marcelo M. Brigido