Marc Niethammer

280 papers A* 32A 4B 7C 2Misc 1Journal 121Unranked 109

Year	Rank	Type	Title / Venue / Authors
2026	J	`jnl`	On The Robustness of Foundational 3D Medical Image Segmentation Models Against Imprecise Visual Prompts. CoRR Soumitri Chattopadhyay, Basar Demir, Marc Niethammer
2026	J	`jnl`	PRISM: A 3D Probabilistic Neural Representation for Interpretable Shape Modeling. CoRR Yining Jiao, Sreekalyani Bhamidi, Carlton J. Zdanski, Julia S. Kimbell, Andrew Prince, Cameron Worden, Samuel Kirse, Christopher Rutter, Benjamin Shields, Jisan Mahmud, Marc Niethammer
2026	J	`jnl`	UnSCAR: Universal, Scalable, Controllable, and Adaptable Image Restoration. CoRR Debabrata Mandal, Soumitri Chattopadhyay, Yujie Wang, Marc Niethammer, Praneeth Chakravarthula
2025	A*	`conf`	CARL: A Framework for Equivariant Image Registration. CVPR Thomas Hastings Greer, Lin Tian, François-Xavier Vialard, Roland Kwitt, Raúl San José Estépar, Marc Niethammer
2025	J	`jnl`	Downstream Analysis of Foundational Medical Vision Models for Disease Progression. CoRR Basar Demir, Soumitri Chattopadhyay, Thomas Hastings Greer, Boqi Chen, Marc Niethammer
2025	J	`jnl`	Guiding Registration with Emergent Similarity from Pre-Trained Diffusion Models. CoRR Nurislam Tursynbek, Thomas Hastings Greer, Basar Demir, Marc Niethammer
2025	—	`conf`	Guiding Registration with Emergent Similarity from Pre-trained Diffusion Models. MICCAI (4) Nurislam Tursynbek, Thomas Hastings Greer, Basar Demir, Marc Niethammer
2025	J	`jnl`	Investigating Demographic Bias in Brain MRI Segmentation: A Comparative Study of Deep-Learning and Non-Deep-Learning Methods. CoRR Ghazal Danaee, Marc Niethammer, Jarrett Rushmore, Sylvain Bouix
2025	A*	`conf`	LiVOS: Light Video Object Segmentation with Gated Linear Matching. CVPR Qin Liu, Jianfeng Wang, Zhengyuan Yang, Linjie Li, Kevin Lin, Marc Niethammer, Lijuan Wang
2025	J	`jnl`	LucidAtlas$: Learning Uncertainty-Aware, Covariate-Disentangled, Individualized Atlas Representations. CoRR Yining Jiao, Sreekalyani Bhamidi, Huaizhi Qu, Carlton J. Zdanski, Julia S. Kimbell, Andrew Prince, Cameron Worden, Samuel Kirse, Christopher Rutter, Benjamin Shields, William Dunn, Jisan Mahmud, Tianlong Chen, Marc Niethammer
2025	J	`jnl`	NOCTA: Non-Greedy Objective Cost-Tradeoff Acquisition for Longitudinal Data. CoRR Dzung Dinh, Boqi Chen, Marc Niethammer, Junier Oliva
2025	J	`jnl`	PPS-Ctrl: Controllable Sim-to-Real Translation for Colonoscopy Depth Estimation. CoRR Xinqi Xiong, Andrea Dunn Beltran, Jun Myeong Choi, Marc Niethammer, Roni Sengupta
2025	Misc	`conf`	Predictive Execution of Workflows in a HPC+Cloud Environment. HiPC Subhendu Behera, Jae-Seung Yeom, Daniel Milroy, Marc Niethammer, Frank Mueller
2025	J	`jnl`	Zero-shot Domain Generalization of Foundational Models for 3D Medical Image Segmentation: An Experimental Study. CoRR Soumitri Chattopadhyay, Basar Demir, Marc Niethammer
2024	—	`conf`	A Unified Model for Longitudinal Multi-Modal Multi-View Prediction with Missingness. MICCAI (12) Boqi Chen, Junier Oliva, Marc Niethammer
2024	J	`jnl`	A Unified Model for Longitudinal Multi-Modal Multi-View Prediction with Missingness. CoRR Boqi Chen, Junier Oliva, Marc Niethammer
2024	A*	`conf`	CARES: A Comprehensive Benchmark of Trustworthiness in Medical Vision Language Models. NeurIPS Peng Xia, Ze Chen, Juanxi Tian, Yangrui Gong, Ruibo Hou, Yue Xu, Zhenbang Wu, Zhiyuan Fan, Yiyang Zhou, Kangyu Zhu, Wenhao Zheng, Zhaoyang Wang, Xiao Wang, Xuchao Zhang, Chetan Bansal, Marc Niethammer, Junzhou Huang, Hongtu Zhu, Yun Li, Jimeng Sun, Zongyuan Ge, Gang Li, James Y. Zou, Huaxiu Yao
2024	J	`jnl`	CARES: A Comprehensive Benchmark of Trustworthiness in Medical Vision Language Models. CoRR Peng Xia, Ze Chen, Juanxi Tian, Yangrui Gong, Ruibo Hou, Yue Xu, Zhenbang Wu, Zhiyuan Fan, Yiyang Zhou, Kangyu Zhu, Wenhao Zheng, Zhaoyang Wang, Xiao Wang, Xuchao Zhang, Chetan Bansal, Marc Niethammer, Junzhou Huang, Hongtu Zhu, Yun Li, Jimeng Sun, Zongyuan Ge, Gang Li, James Zou, Huaxiu Yao
2024	J	`jnl`	CARL: A Framework for Equivariant Image Registration. CoRR Thomas Hastings Greer, Lin Tian, François-Xavier Vialard, Roland Kwitt, Raúl San José Estépar, Marc Niethammer
2024	A	`conf`	Joint Depth Prediction and Semantic Segmentation with Multi-View SAM. WACV Mykhailo Shvets, Dongxu Zhao, Marc Niethammer, Roni Sengupta, Alexander C. Berg
2024	—	`conf`	Leveraging Near-Field Lighting for Monocular Depth Estimation from Endoscopy Videos. ECCV (32) Akshay Paruchuri, Samuel Ehrenstein, Shuxian Wang, Inbar Fried, Stephen M. Pizer, Marc Niethammer, Roni Sengupta
2024	J	`jnl`	Leveraging Near-Field Lighting for Monocular Depth Estimation from Endoscopy Videos. CoRR Akshay Paruchuri, Samuel Ehrenstein, Shuxian Wang, Inbar Fried, Stephen M. Pizer, Marc Niethammer, Roni Sengupta
2024	J	`jnl`	LiVOS: Light Video Object Segmentation with Gated Linear Matching. CoRR Qin Liu, Jianfeng Wang, Zhengyuan Yang, Linjie Li, Kevin Lin, Marc Niethammer, Lijuan Wang
2024	—	`conf`	MultiGradICON: A Foundation Model for Multimodal Medical Image Registration. WBIR Basar Demir, Lin Tian, Thomas Hastings Greer, Roland Kwitt, François-Xavier Vialard, Raúl San José Estépar, Sylvain Bouix, Richard J. Rushmore, Ebrahim Ebrahim, Marc Niethammer
2024	—	`conf`	Multimodal Image Registration Guided by Few Segmentations from One Modality. MIDL Basar Demir, Marc Niethammer
2024	A*	`conf`	NAISR: A 3D Neural Additive Model for Interpretable Shape Representation. ICLR Yining Jiao, Carlton J. Zdanski, Julia S. Kimbell, Andrew Prince, Cameron Worden, Samuel Kirse, Christopher Rutter, Benjamin Shields, William Dunn, Jisan Mahmud, Marc Niethammer
2024	J	`jnl`	NFL-BA: Improving Endoscopic SLAM with Near-Field Light Bundle Adjustment. CoRR Andrea Dunn Beltran, Daniel Rho, Marc Niethammer, Roni Sengupta
2024	—	`conf`	NePhi: Neural Deformation Fields for Approximately Diffeomorphic Medical Image Registration. ECCV (88) Lin Tian, Thomas Hastings Greer, Raúl San José Estépar, Roni Sengupta, Marc Niethammer
2024	J	`jnl`	NeuralOCT: Airway OCT Analysis via Neural Fields. CoRR Yining Jiao, Amy L. Oldenburg, Yinghan Xu, Srikamal Soundararajan, Carlton J. Zdanski, Julia S. Kimbell, Marc Niethammer
2024	A*	`conf`	Rethinking Interactive Image Segmentation with Low Latency, High Quality, and Diverse Prompts. CVPR Qin Liu, Jaemin Cho, Mohit Bansal, Marc Niethammer
2024	J	`jnl`	Rethinking Interactive Image Segmentation with Low Latency, High Quality, and Diverse Prompts. CoRR Qin Liu, Jaemin Cho, Mohit Bansal, Marc Niethammer
2024	J	`jnl`	multiGradICON: A Foundation Model for Multimodal Medical Image Registration. CoRR Basar Demir, Lin Tian, Thomas Hastings Greer, Roland Kwitt, François-Xavier Vialard, Raúl San José Estépar, Sylvain Bouix, Richard Jarrett Rushmore, Ebrahim Ebrahim, Marc Niethammer
2024	—	`conf`	uniGradICON: A Foundation Model for Medical Image Registration. MICCAI (2) Lin Tian, Thomas Hastings Greer, Roland Kwitt, François-Xavier Vialard, Raúl San José Estépar, Sylvain Bouix, Richard J. Rushmore, Marc Niethammer
2024	J	`jnl`	uniGradICON: A Foundation Model for Medical Image Registration. CoRR Lin Tian, Thomas Hastings Greer, Roland Kwitt, François-Xavier Vialard, Raúl San José Estépar, Sylvain Bouix, Richard J. Rushmore, Marc Niethammer
2023	A*	`conf`	Continuously Parameterized Mixture Models. ICML Christopher M. Bender, Yifeng Shi, Marc Niethammer, Junier Oliva
2023	J	`jnl`	Exploring Cycle Consistency Learning in Interactive Volume Segmentation. CoRR Qin Liu, Meng Zheng, Benjamin Planche, Zhongpai Gao, Terrence Chen, Marc Niethammer, Ziyan Wu
2023	A*	`conf`	GradICON: Approximate Diffeomorphisms via Gradient Inverse Consistency. CVPR Lin Tian, Thomas Hastings Greer, François-Xavier Vialard, Roland Kwitt, Raúl San José Estépar, Richard Jarrett Rushmore, Nikolaos Makris, Sylvain Bouix, Marc Niethammer
2023	—	`conf`	Harmonization Benchmarking Tool for Neuroimaging Datasets. ISBI T. Osika, Ebrahim Ebrahim, Martin Styner, Marc Niethammer, T. Sawyer, Andinet Enquobahrie
2023	—	`conf`	Inverse Consistency by Construction for Multistep Deep Registration. MICCAI (10) Thomas Hastings Greer, Lin Tian, François-Xavier Vialard, Roland Kwitt, Sylvain Bouix, Raúl San José Estépar, Richard J. Rushmore, Marc Niethammer
2023	J	`jnl`	Inverse Consistency by Construction for Multistep Deep Registration. CoRR Thomas Hastings Greer, Lin Tian, François-Xavier Vialard, Roland Kwitt, Sylvain Bouix, Raúl San José Estépar, Richard Jarrett Rushmore, Marc Niethammer
2023	J	`jnl`	Joint Depth Prediction and Semantic Segmentation with Multi-View SAM. CoRR Mykhailo Shvets, Dongxu Zhao, Marc Niethammer, Roni Sengupta, Alexander C. Berg
2023	—	`conf`	MRIS: A Multi-modal Retrieval Approach for Image Synthesis on Diverse Modalities. MICCAI (10) Boqi Chen, Marc Niethammer
2023	J	`jnl`	MRIS: A Multi-modal Retrieval Approach for Image Synthesis on Diverse Modalities. CoRR Boqi Chen, Marc Niethammer
2023	J	`jnl`	Multimodal Understanding Through Correlation Maximization and Minimization. CoRR Yifeng Shi, Marc Niethammer
2023	J	`jnl`	NAISR: A 3D Neural Additive Model for Interpretable Shape Representation. CoRR Yining Jiao, Carlton J. Zdanski, Julia S. Kimbell, Andrew Prince, Cameron Worden, Samuel Kirse, Christopher Rutter, Benjamin Shields, William Dunn, Jisan Mahmud, Marc Niethammer
2023	J	`jnl`	NePhi: Neural Deformation Fields for Approximately Diffeomorphic Medical Image Registration. CoRR Lin Tian, Soumyadip Sengupta, Thomas Hastings Greer, Raúl San José Estépar, Marc Niethammer
2023	J	`jnl`	Optimal transport features for morphometric population analysis. Medical Image Anal. Samuel Gerber, Marc Niethammer, Ebrahim Ebrahim, Joseph Piven, Stephen R. Dager, Martin Styner, Stephen R. Aylward, Andinet Enquobahrie
2023	J	`jnl`	SAME++: A Self-supervised Anatomical eMbeddings Enhanced medical image registration framework using stable sampling and regularized transformation. CoRR Lin Tian, Zi Li, Fengze Liu, Xiaoyu Bai, Jia Ge, Le Lu, Marc Niethammer, Xianghua Ye, Ke Yan, Dakai Jin
2023	—	`conf`	Self-supervised Landmark Learning with Deformation Reconstruction and Cross-Subject Consistency Objectives. PRIME@MICCAI Chun-Hung Chao, Marc Niethammer
2023	J	`jnl`	Self-supervised Landmark Learning with Deformation Reconstruction and Cross-subject Consistency Objectives. CoRR Chun-Hung Chao, Marc Niethammer
2023	A*	`conf`	SimpleClick: Interactive Image Segmentation with Simple Vision Transformers. ICCV Qin Liu, Zhenlin Xu, Gedas Bertasius, Marc Niethammer
2023	—	`conf`	Unsupervised Discovery of 3D Hierarchical Structure with Generative Diffusion Features. MICCAI (1) Nurislam Tursynbek, Marc Niethammer
2023	J	`jnl`	Unsupervised Discovery of 3D Hierarchical Structure with Generative Diffusion Features. CoRR Nurislam Tursynbek, Marc Niethammer
2022	J	`jnl`	A feature-based affine registration method for capturing background lung tissue deformation for ground glass nodule tracking. Comput. methods Biomech. Biomed. Eng. Imaging Vis. Yehuda K. Ben-Zikri, María Helguera, David Fetzer, David A. Shrier, Stephen R. Aylward, Deepak Chittajallu, Marc Niethammer, Nathan D. Cahill, Cristian A. Linte
2022	A*	`conf`	Aladdin: Joint Atlas Building and Diffeomorphic Registration Learning with Pairwise Alignment. CVPR Zhipeng Ding, Marc Niethammer
2022	J	`jnl`	Aladdin: Joint Atlas Building and Diffeomorphic Registration Learning with Pairwise Alignment. CoRR Zhipeng Ding, Marc Niethammer
2022	A*	`conf`	Compositional Generalization in Unsupervised Compositional Representation Learning: A Study on Disentanglement and Emergent Language. NeurIPS Zhenlin Xu, Marc Niethammer, Colin Raffel
2022	J	`jnl`	Compositional Generalization in Unsupervised Compositional Representation Learning: A Study on Disentanglement and Emergent Language. CoRR Zhenlin Xu, Marc Niethammer, Colin Raffel
2022	J	`jnl`	DADP: Dynamic abnormality detection and progression for longitudinal knee magnetic resonance images from the Osteoarthritis Initiative. Medical Image Anal. Chao Huang, Zhenlin Xu, Zhengyang Shen, Tianyou Luo, Tengfei Li, Daniel Nissman, Amanda Nelson, Yvonne Golightly, Marc Niethammer, Hongtu Zhu
2022	A*	`conf`	Deep Decomposition for Stochastic Normal-Abnormal Transport. CVPR Peirong Liu, Yueh Z. Lee, Stephen R. Aylward, Marc Niethammer
2022	J	`jnl`	Fluid registration between lung CT and stationary chest tomosynthesis images. CoRR Lin Tian, Connor Puett, Peirong Liu, Zhengyang Shen, Stephen R. Aylward, Yueh Z. Lee, Marc Niethammer
2022	J	`jnl`	GradICON: Approximate Diffeomorphisms via Gradient Inverse Consistency. CoRR Lin Tian, Thomas Hastings Greer, François-Xavier Vialard, Roland Kwitt, Raúl San José Estépar, Marc Niethammer
2022	—	`conf`	LiftReg: Limited Angle 2D/3D Deformable Registration. MICCAI (6) Lin Tian, Yueh Z. Lee, Raúl San José Estépar, Marc Niethammer
2022	J	`jnl`	LiftReg: Limited Angle 2D/3D Deformable Registration. CoRR Lin Tian, Yueh Z. Lee, Raúl San José Estépar, Marc Niethammer
2022	A*	`conf`	On Measuring Excess Capacity in Neural Networks. NeurIPS Florian Graf, Sebastian Zeng, Bastian Rieck, Marc Niethammer, Roland Kwitt
2022	J	`jnl`	On Measuring Excess Capacity in Neural Networks. CoRR Florian Graf, Sebastian Zeng, Marc Niethammer, Roland Kwitt
2022	J	`jnl`	Optimal Transport Features for Morphometric Population Analysis. CoRR Samuel Gerber, Marc Niethammer, Ebrahim Ebrahim, Joseph Piven, Stephen R. Dager, Martin Styner, Stephen R. Aylward, Andinet Enquobahrie
2022	—	`conf`	PseudoClick: Interactive Image Segmentation with Click Imitation. ECCV (6) Qin Liu, Meng Zheng, Benjamin Planche, Srikrishna Karanam, Terrence Chen, Marc Niethammer, Ziyan Wu
2022	J	`jnl`	PseudoClick: Interactive Image Segmentation with Click Imitation. CoRR Qin Liu, Meng Zheng, Benjamin Planche, Srikrishna Karanam, Terrence Chen, Marc Niethammer, Ziyan Wu
2022	J	`jnl`	SimpleClick: Interactive Image Segmentation with Simple Vision Transformers. CoRR Qin Liu, Zhenlin Xu, Gedas Bertasius, Marc Niethammer
2022	J	`jnl`	The fairness-accuracy Pareto front. Stat. Anal. Data Min. Susan Wei, Marc Niethammer
2022	—	`conf`	iSegFormer: Interactive Segmentation via Transformers with Application to 3D Knee MR Images. MICCAI (5) Qin Liu, Zhenlin Xu, Yining Jiao, Marc Niethammer
2021	A*	`conf`	Accurate Point Cloud Registration with Robust Optimal Transport. NeurIPS Zhengyang Shen, Jean Feydy, Peirong Liu, Ariel Hernán Curiale, Rubén San José Estépar, Raúl San José Estépar, Marc Niethammer
2021	J	`jnl`	Accurate Point Cloud Registration with Robust Optimal Transport. CoRR Zhengyang Shen, Jean Feydy, Peirong Liu, Ariel Hernán Curiale, Rubén San José Estépar, Raúl San José Estépar, Marc Niethammer
2021	J	`jnl`	Deep Decomposition for Stochastic Normal-Abnormal Transport. CoRR Peirong Liu, Yueh Z. Lee, Stephen R. Aylward, Marc Niethammer
2021	A*	`conf`	Discovering Hidden Physics Behind Transport Dynamics. CVPR Peirong Liu, Lin Tian, Yubo Zhang, Stephen R. Aylward, Yueh Z. Lee, Marc Niethammer
2021	A*	`conf`	Dissecting Supervised Constrastive Learning. ICML Florian Graf, Christoph D. Hofer, Marc Niethammer, Roland Kwitt
2021	J	`jnl`	Dissecting Supervised Constrastive Learning. CoRR Florian Graf, Christoph D. Hofer, Marc Niethammer, Roland Kwitt
2021	A*	`conf`	ICON: Learning Regular Maps Through Inverse Consistency. ICCV Thomas Hastings Greer, Roland Kwitt, François-Xavier Vialard, Marc Niethammer
2021	J	`jnl`	ICON: Learning Regular Maps Through Inverse Consistency. CoRR Thomas Hastings Greer, Roland Kwitt, François-Xavier Vialard, Marc Niethammer
2021	A*	`conf`	Local Temperature Scaling for Probability Calibration. ICCV Zhipeng Ding, Xu Han, Peirong Liu, Marc Niethammer
2021	J	`jnl`	Perfusion Imaging: An Advection Diffusion Approach. IEEE Trans. Medical Imaging Peirong Liu, Yueh Z. Lee, Stephen R. Aylward, Marc Niethammer
2021	A*	`conf`	Robust and Generalizable Visual Representation Learning via Random Convolutions. ICLR Zhenlin Xu, Deyi Liu, Junlin Yang, Colin Raffel, Marc Niethammer
2021	—	`conf`	Votenet++: Registration Refinement For Multi-Atlas Segmentation. ISBI Zhipeng Ding, Marc Niethammer
2020	—	`conf`	A Deep Network for Joint Registration and Reconstruction of Images with Pathologies. MLMI@MICCAI Xu Han, Zhengyang Shen, Zhenlin Xu, Spyridon Bakas, Hamed Akbari, Michel Bilello, Christos Davatzikos, Marc Niethammer
2020	J	`jnl`	A Deep Network for Joint Registration and Reconstruction of Images with Pathologies. CoRR Xu Han, Zhengyang Shen, Zhenlin Xu, Spyridon Bakas, Hamed Akbari, Michel Bilello, Christos Davatzikos, Marc Niethammer
2020	J	`jnl`	A Shooting Formulation of Deep Learning. CoRR François-Xavier Vialard, Roland Kwitt, Susan Wei, Marc Niethammer
2020	A*	`conf`	A shooting formulation of deep learning. NeurIPS François-Xavier Vialard, Roland Kwitt, Susan Wei, Marc Niethammer
2020	—	`conf`	Adversarial Data Augmentation via Deformation Statistics. ECCV (29) Sahin Olut, Zhengyang Shen, Zhenlin Xu, Samuel Gerber, Marc Niethammer
2020	—	`conf`	Anatomical Data Augmentation via Fluid-Based Image Registration. MICCAI (3) Zhengyang Shen, Zhenlin Xu, Sahin Olut, Marc Niethammer
2020	J	`jnl`	Anatomical Data Augmentation via Fluid-based Image Registration. CoRR Zhengyang Shen, Zhenlin Xu, Sahin Olut, Marc Niethammer
2020	—	`conf`	Automatic Optic Nerve Sheath Measurement in Point-of-Care Ultrasound. ASMUS/PIPPI@MICCAI Brad T. Moore, Sean Montgomery, Marc Niethammer, Thomas Hastings Greer, Stephen R. Aylward
2020	J	`jnl`	Deep Goal-Oriented Clustering. CoRR Yifeng Shi, Christopher M. Bender, Junier B. Oliva, Marc Niethammer
2020	A*	`conf`	Deep Message Passing on Sets. AAAI Yifeng Shi, Junier Oliva, Marc Niethammer
2020	J	`jnl`	Discovering Hidden Physics Behind Transport Dynamics. CoRR Peirong Liu, Lin Tian, Yubo Zhang, Stephen R. Aylward, Yueh Z. Lee, Marc Niethammer
2020	—	`conf`	Fluid Registration Between Lung CT and Stationary Chest Tomosynthesis Images. MICCAI (3) Lin Tian, Connor Puett, Peirong Liu, Zhengyang Shen, Stephen R. Aylward, Yueh Z. Lee, Marc Niethammer
2020	A*	`conf`	Graph Filtration Learning. ICML Christoph D. Hofer, Florian Graf, Bastian Rieck, Marc Niethammer, Roland Kwitt
2020	J	`jnl`	Local Temperature Scaling for Probability Calibration. CoRR Zhipeng Ding, Xu Han, Peirong Liu, Marc Niethammer
2020	—	`conf`	PIANO: Perfusion Imaging via Advection-Diffusion. MICCAI (7) Peirong Liu, Yueh Z. Lee, Stephen R. Aylward, Marc Niethammer
2020	J	`jnl`	Perfusion Imaging: A Data Assimilation Approach. CoRR Peirong Liu, Yueh Z. Lee, Stephen R. Aylward, Marc Niethammer
2020	J	`jnl`	Robust and Generalizable Visual Representation Learning via Random Convolutions. CoRR Zhenlin Xu, Deyi Liu, Junlin Yang, Marc Niethammer
2020	—	`conf`	Spatial Component Analysis to Mitigate Multiple Testing in Voxel-Based Analysis. MICCAI (7) Samuel Gerber, Marc Niethammer
2020	J	`jnl`	The Fairness-Accuracy Pareto Front. CoRR Susan Wei, Marc Niethammer
2020	A*	`conf`	Topologically Densified Distributions. ICML Christoph D. Hofer, Florian Graf, Marc Niethammer, Roland Kwitt
2020	J	`jnl`	Topologically Densified Distributions. CoRR Christoph D. Hofer, Florian Graf, Marc Niethammer, Roland Kwitt
2020	J	`jnl`	VoteNet++: Registration Refinement for Multi-Atlas Segmentation. CoRR Zhipeng Ding, Marc Niethammer
2020	—	`conf`	Votenet +: An Improved Deep Learning Label Fusion Method for Multi-Atlas Segmentation. ISBI Zhipeng Ding, Xu Han, Marc Niethammer
2019	A*	`conf`	Connectivity-Optimized Representation Learning via Persistent Homology. ICML Christoph D. Hofer, Roland Kwitt, Marc Niethammer, Mandar Dixit
2019	J	`jnl`	Connectivity-Optimized Representation Learning via Persistent Homology. CoRR Christoph D. Hofer, Roland Kwitt, Mandar Dixit, Marc Niethammer
2019	J	`jnl`	Deep Message Passing on Sets. CoRR Yifeng Shi, Junier Oliva, Marc Niethammer
2019	J	`jnl`	Deep Multi-View Learning via Task-Optimal CCA. CoRR Heather D. Couture, Roland Kwitt, J. S. Marron, Melissa A. Troester, Charles M. Perou, Marc Niethammer
2019	J	`jnl`	DeepAtlas: Joint Semi-Supervised Learning of Image Registration and Segmentation. CoRR Zhenlin Xu, Marc Niethammer
2019	—	`conf`	DeepAtlas: Joint Semi-supervised Learning of Image Registration and Segmentation. MICCAI (2) Zhenlin Xu, Marc Niethammer
2019	J	`jnl`	Fast predictive simple geodesic regression. Medical Image Anal. Zhipeng Ding, Greg M. Fleishman, Xiao Yang, Paul Thompson, Roland Kwitt, Marc Niethammer
2019	J	`jnl`	Graph Filtration Learning. CoRR Christoph D. Hofer, Roland Kwitt, Marc Niethammer
2019	J	`jnl`	Image-Based Methods for Phase Estimation, Gating, and Temporal Superresolution of Cardiac Ultrasound. IEEE Trans. Biomed. Eng. Deepak Roy Chittajallu, Matthew McCormick, Samuel Gerber, Tomasz J. Czernuszewicz, Ryan C. Gessner, Monte S. Willis, Marc Niethammer, Roland Kwitt, Stephen R. Aylward
2019	J	`jnl`	Learning Representations of Persistence Barcodes. J. Mach. Learn. Res. Christoph D. Hofer, Roland Kwitt, Marc Niethammer
2019	A*	`conf`	Metric Learning for Image Registration. CVPR Marc Niethammer, Roland Kwitt, François-Xavier Vialard
2019	J	`jnl`	Metric Learning for Image Registration. CoRR Marc Niethammer, Roland Kwitt, François-Xavier Vialard
2019	—	`conf`	Multiseg pipeline: automatic tissue segmentation of brain MR images with subject-specific atlases. Biomedical Applications in Molecular, Structural, and Functional Imaging Kevin Pham, Xiao Yang, Marc Niethammer, Juan-Carlos Prieto, Martin Styner
2019	A*	`conf`	Networks for Joint Affine and Non-Parametric Image Registration. CVPR Zhengyang Shen, Xu Han, Zhenlin Xu, Marc Niethammer
2019	J	`jnl`	Networks for Joint Affine and Non-parametric Image Registration. CoRR Zhengyang Shen, Xu Han, Zhenlin Xu, Marc Niethammer
2019	A*	`conf`	Region-specific Diffeomorphic Metric Mapping. NeurIPS Zhengyang Shen, François-Xavier Vialard, Marc Niethammer
2019	J	`jnl`	Region-specific Diffeomorphic Metric Mapping. CoRR Zhengyang Shen, François-Xavier Vialard, Marc Niethammer
2019	J	`jnl`	Stochastic block models with multiple continuous attributes. Appl. Netw. Sci. Natalie Stanley, Thomas Bonacci, Roland Kwitt, Marc Niethammer, Peter J. Mucha
2019	J	`jnl`	VoteNet+ : An Improved Deep Learning Label Fusion Method for Multi-atlas Segmentation. CoRR Zhipeng Ding, Xu Han, Marc Niethammer
2019	J	`jnl`	VoteNet: A Deep Learning Label Fusion Method for Multi-Atlas Segmentation. CoRR Zhipeng Ding, Xu Han, Marc Niethammer
2019	—	`conf`	VoteNet: A Deep Learning Label Fusion Method for Multi-atlas Segmentation. MICCAI (3) Zhipeng Ding, Xu Han, Marc Niethammer
2018	B	`conf`	Automatic Multi-Atlas Segmentation for Abdominal Images Using Template Construction and Robust Principal Component Analysis. ICPR Yu Zhao, Hongwei Li, Rong Zhou, Giles Tetteh, Marc Niethammer, Bjoern H. Menze
2018	J	`jnl`	Brain extraction from normal and pathological images: A joint PCA/Image-Reconstruction approach. NeuroImage Xu Han, Roland Kwitt, Stephen R. Aylward, Spyridon Bakas, Bjoern H. Menze, Alexander Asturias, Paul M. Vespa, John D. Van Horn, Marc Niethammer
2018	—	`conf`	Contextual Additive Networks to Efficiently Boost 3D Image Segmentations. DLMIA/ML-CDS@MICCAI Zhenlin Xu, Zhengyang Shen, Marc Niethammer
2018	—	`conf`	Exploratory Population Analysis with Unbalanced Optimal Transport. MICCAI (3) Samuel Gerber, Marc Niethammer, Martin Styner, Stephen R. Aylward
2018	—	`conf`	Multiple Instance Learning for Heterogeneous Images: Training a CNN for Histopathology. MICCAI (2) Heather D. Couture, J. S. Marron, Charles M. Perou, Melissa A. Troester, Marc Niethammer
2018	J	`jnl`	Multiple Instance Learning for Heterogeneous Images: Training a CNN for Histopathology. CoRR Heather D. Couture, J. S. Marron, Charles M. Perou, Melissa A. Troester, Marc Niethammer
2018	—	`conf`	Patient-Specific Registration of Pre-operative and Post-recurrence Brain Tumor MRI Scans. BrainLes@MICCAI (1) Xu Han, Spyridon Bakas, Roland Kwitt, Stephen R. Aylward, Hamed Akbari, Michel Bilello, Christos Davatzikos, Marc Niethammer
2018	—	`conf`	Scoliosis screening and monitoring using self contained ultrasound and neural networks. ISBI Thomas Hastings Greer, Samuel Gerber, Marc Niethammer, Roland Kwitt, Matt McCormick, Deepak Roy Chittajallu, Neal Siekierski, Matthew Oetgen, Kevin Cleary, Stephen R. Aylward
2018	J	`jnl`	Stochastic Block Models with Multiple Continuous Attributes. CoRR Natalie Stanley, Thomas Bonacci, Roland Kwitt, Marc Niethammer, Peter J. Mucha
2018	J	`jnl`	Testing Alignment of Node Attributes with Network Structure Through Label Propagation. CoRR Natalie Stanley, Marc Niethammer, Peter J. Mucha
2017	A*	`conf`	AGA: Attribute-Guided Augmentation. CVPR Mandar Dixit, Roland Kwitt, Marc Niethammer, Nuno Vasconcelos
2017	J	`jnl`	Active Mean Fields for Probabilistic Image Segmentation: Connections with Chan-Vese and Rudin-Osher-Fatemi Models. SIAM J. Imaging Sci. Marc Niethammer, Kilian M. Pohl, Firdaus Janoos, William M. Wells III
2017	J	`jnl`	Brain Extraction from Normal and Pathological Images: A Joint PCA/Image-Reconstruction Approach. CoRR Xu Han, Roland Kwitt, Stephen R. Aylward, Bjoern H. Menze, Alexander Asturias, Paul M. Vespa, John D. Van Horn, Marc Niethammer
2017	J	`jnl`	Compressing networks with super nodes. CoRR Natalie Stanley, Roland Kwitt, Marc Niethammer, Peter J. Mucha
2017	—	`conf`	Constructing Shape Spaces from a Topological Perspective. IPMI Christoph D. Hofer, Roland Kwitt, Marc Niethammer, Yvonne Höller, Eugen Trinka, Andreas Uhl
2017	—	`conf`	Deep Learning with Topological Signatures. NIPS Christoph D. Hofer, Roland Kwitt, Marc Niethammer, Andreas Uhl
2017	J	`jnl`	Deep Learning with Topological Signatures. CoRR Christoph D. Hofer, Roland Kwitt, Marc Niethammer, Andreas Uhl
2017	J	`jnl`	Efficient Registration of Pathological Images: A Joint PCA/Image-Reconstruction Approach. CoRR Xu Han, Xiao Yang, Stephen R. Aylward, Roland Kwitt, Marc Niethammer
2017	—	`conf`	Efficient registration of pathological images: A joint PCA/image-reconstruction approach. ISBI Xu Han, Xiao Yang, Stephen R. Aylward, Roland Kwitt, Marc Niethammer
2017	J	`jnl`	Fast Predictive Multimodal Image Registration. CoRR Xiao Yang, Roland Kwitt, Martin Styner, Marc Niethammer
2017	—	`conf`	Fast Predictive Simple Geodesic Regression. DLMIA/ML-CDS@MICCAI Zhipeng Ding, Greg M. Fleishman, Xiao Yang, Paul Thompson, Roland Kwitt, Marc Niethammer
2017	J	`jnl`	Fast Predictive Simple Geodesic Regression. CoRR Zhipeng Ding, Greg M. Fleishman, Xiao Yang, Paul Thompson, Roland Kwitt, Marc Niethammer
2017	—	`conf`	Fast predictive multimodal image registration. ISBI Xiao Yang, Roland Kwitt, Martin Styner, Marc Niethammer
2017	—	`ed.`	Information Processing in Medical Imaging - 25th International Conference, IPMI 2017, Boone, NC, USA, June 25-30, 2017, Proceedings IPMI Marc Niethammer, Martin Styner, Stephen R. Aylward, Hongtu Zhu, Ipek Oguz, Pew-Thian Yap, Dinggang Shen
2017	J	`jnl`	Multidimensional classification of hippocampal shape features discriminates Alzheimer's disease and mild cognitive impairment from normal aging. CoRR Emilie Gerardin, Gaël Chételat, Marie Chupin, Rémi Cuingnet, Béatrice Desgranges, Hosung Kim, Marc Niethammer, Bruno Dubois, Stéphane Lehéricy, Line Garnero, Francis Eustache, Olivier Colliot
2017	—	`conf`	Orthotropic Thin Shell Elasticity Estimation for Surface Registration. IPMI Qingyu Zhao, Stephen M. Pizer, Ron Alterovitz, Marc Niethammer, Julian G. Rosenman
2017	J	`jnl`	Probabilistic Diffeomorphic Registration: Representing Uncertainty. CoRR Demian Wassermann, Matthew Toews, Marc Niethammer, William M. Wells III
2017	J	`jnl`	Quicksilver: Fast Predictive Image Registration - a Deep Learning Approach. CoRR Xiao Yang, Roland Kwitt, Marc Niethammer
2017	J	`jnl`	Quicksilver: Fast predictive image registration - A deep learning approach. NeuroImage Xiao Yang, Roland Kwitt, Martin Styner, Marc Niethammer
2017	A	`conf`	Regression Uncertainty on the Grassmannian. AISTATS Yi Hong, Xiao Yang, Roland Kwitt, Martin Styner, Marc Niethammer
2016	J	`jnl`	AGA: Attribute Guided Augmentation. CoRR Mandar Dixit, Roland Kwitt, Marc Niethammer, Nuno Vasconcelos
2016	—	`conf`	Fast Predictive Image Registration. LABELS/DLMIA@MICCAI Xiao Yang, Roland Kwitt, Marc Niethammer
2016	J	`jnl`	Fast Predictive Image Registration. CoRR Xiao Yang, Roland Kwitt, Marc Niethammer
2016	—	`conf`	Memory Efficient LDDMM for Lung CT. MICCAI (3) Thomas Polzin, Marc Niethammer, Mattias P. Heinrich, Heinz Handels, Jan Modersitzki
2016	A*	`conf`	One-Shot Learning of Scene Locations via Feature Trajectory Transfer. CVPR Roland Kwitt, Sebastian Hegenbart, Marc Niethammer
2016	J	`jnl`	Parametric Regression on the Grassmannian. IEEE Trans. Pattern Anal. Mach. Intell. Yi Hong, Roland Kwitt, Nikhil Singh, Nuno Vasconcelos, Marc Niethammer
2016	—	`conf`	Registration of Developmental Image Sequences with Missing Data. CVPR Workshops Istvan Csapo, Yundi Shi, Mar Sanchez, Martin Styner, Marc Niethammer
2016	—	`conf`	Registration of Pathological Images. SASHIMI@MICCAI Xiao Yang, Xu Han, Eunbyung Park, Stephen R. Aylward, Roland Kwitt, Marc Niethammer
2016	—	`conf`	The Endoscopogram: A 3D Model Reconstructed from Endoscopic Video Frames. MICCAI (1) Qingyu Zhao, True Price, Stephen M. Pizer, Marc Niethammer, Ron Alterovitz, Julian G. Rosenman
2016	—	`conf`	Ultrasound spectroscopy. ISBI Stephen R. Aylward, Matthew McCormick, Hyun Jae Kang, Sharif Razzaque, Roland Kwitt, Marc Niethammer
2015	J	`jnl`	Active Mean Fields for Probabilistic Image Segmentation: Connections with Chan-Vese and Rudin-Osher-Fatemi Models. CoRR Marc Niethammer, Kilian M. Pohl, Firdaus Janoos, William M. Wells III
2015	J	`jnl`	Appearance normalization of histology slides. Comput. Medical Imaging Graph. Jared Vicory, Heather D. Couture, Nancy E. Thomas, David Borland, J. S. Marron, John T. Woosley, Marc Niethammer
2015	J	`jnl`	Diseased Region Detection of Longitudinal Knee Magnetic Resonance Imaging Data. IEEE Trans. Medical Imaging Chao Huang, Liang Shan, Cecil Charles, Wolfgang Wirth, Marc Niethammer, Hongtu Zhu
2015	—	`conf`	Group Testing for Longitudinal Data. IPMI Yi Hong, Nikhil Singh, Roland Kwitt, Marc Niethammer
2015	—	`conf`	Hierarchical task-driven feature learning for tumor histology. ISBI Heather D. Couture, J. S. Marron, Nancy E. Thomas, Charles M. Perou, Marc Niethammer
2015	—	`conf`	Model Criticism for Regression on the Grassmannian. MICCAI (3) Yi Hong, Roland Kwitt, Marc Niethammer
2015	J	`jnl`	Parametric Regression on the Grassmannian. CoRR Yi Hong, Nikhil Singh, Roland Kwitt, Nuno Vasconcelos, Marc Niethammer
2015	J	`jnl`	Scene Parsing with Object Instance Inference Using Regions and Per-exemplar Detectors. Int. J. Comput. Vis. Joseph Tighe, Marc Niethammer, Svetlana Lazebnik
2015	—	`conf`	Semi-coupled dictionary learning for deformation prediction. ISBI Tian Cao, Nikhil Singh, Vladimir Jojic, Marc Niethammer
2015	J	`jnl`	Shape analysis based on depth-ordering. Medical Image Anal. Yi Hong, Yi Gao, Marc Niethammer, Sylvain Bouix
2015	—	`ed.`	Spatio-temporal Image Analysis for Longitudinal and Time-Series Image Data - Third International Workshop, STIA 2014, Held in Conjunction with MICCAI 2014, Boston, MA, USA, September 18, 2014, Revised Selected Papers STIA Stanley Durrleman, Tom Fletcher, Guido Gerig, Marc Niethammer, Xavier Pennec
2015	J	`jnl`	Splines for diffeomorphisms. Medical Image Anal. Nikhil Singh, François-Xavier Vialard, Marc Niethammer
2015	—	`conf`	Statistical Topological Data Analysis - A Kernel Perspective. NIPS Roland Kwitt, Stefan Huber, Marc Niethammer, Weili Lin, Ulrich Bauer
2015	—	`conf`	Surface Registration in the Presence of Missing Patches and Topology Change. MIUA Qingyu Zhao, James Price, Stephen M. Pizer, Marc Niethammer, Ron Alterovitz, Julian G. Rosenman
2015	—	`conf`	Uncertainty Quantification for LDDMM Using a Low-Rank Hessian Approximation. MICCAI (2) Xiao Yang, Marc Niethammer
2014	J	`jnl`	Automatic atlas-based three-label cartilage segmentation from MR knee images. Medical Image Anal. Liang Shan, Christopher Zach, Cecil Charles, Marc Niethammer
2014	—	`conf`	Depth-Based Shape-Analysis. MICCAI (3) Yi Hong, Yi Gao, Marc Niethammer, Sylvain Bouix
2014	—	`conf`	Geodesic Regression on the Grassmannian. ECCV (2) Yi Hong, Roland Kwitt, Nikhil Singh, Brad Davis, Nuno Vasconcelos, Marc Niethammer
2014	—	`conf`	Geometric-Feature-Based Spectral Graph Matching in Pharyngeal Surface Registration. MICCAI (1) Qingyu Zhao, Stephen M. Pizer, Marc Niethammer, Julian G. Rosenman
2014	J	`jnl`	Large deformation diffeomorphic registration of diffusion-weighted imaging data. Medical Image Anal. Pei Zhang, Marc Niethammer, Dinggang Shen, Pew-Thian Yap
2014	—	`conf`	Low-Rank to the Rescue - Atlas-Based Analyses in the Presence of Pathologies. MICCAI (3) Xiaoxiao Liu, Marc Niethammer, Roland Kwitt, Matthew McCormick, Stephen R. Aylward
2014	J	`jnl`	Multi-modal Image Registration for Correlative Microscopy. CoRR Tian Cao, Christopher Zach, Shannon Modla, Debbie Powell, Kirk Czymmek, Marc Niethammer
2014	J	`jnl`	Multi-modal registration for correlative microscopy using image analogies. Medical Image Anal. Tian Cao, Christopher Zach, Shannon Modla, Debbie Powell, Kirk Czymmek, Marc Niethammer
2014	J	`jnl`	PORTR: Pre-Operative and Post-Recurrence Brain Tumor Registration. IEEE Trans. Medical Imaging Dongjin Kwon, Marc Niethammer, Hamed Akbari, Michel Bilello, Christos Davatzikos, Kilian M. Pohl
2014	—	`conf`	Probabilistic Diffeomorphic Registration: Representing Uncertainty. WBIR Demian Wassermann, Matthew Toews, Marc Niethammer, William M. Wells III
2014	A*	`conf`	Scene Parsing with Object Instances and Occlusion Ordering. CVPR Joseph Tighe, Marc Niethammer, Svetlana Lazebnik
2014	—	`conf`	Splines for Diffeomorphic Image Regression. MICCAI (2) Nikhil Singh, Marc Niethammer
2014	J	`jnl`	Statistical atlas construction via weighted functional boxplots. Medical Image Anal. Yi Hong, Brad Davis, J. S. Marron, Roland Kwitt, Nikhil Singh, Julia S. Kimbell, Elizabeth Pitkin, Richard Superfine, Stephanie Davis, Carlton J. Zdanski, Marc Niethammer
2014	—	`conf`	Time-Warped Geodesic Regression. MICCAI (2) Yi Hong, Nikhil Singh, Roland Kwitt, Marc Niethammer
2014	—	`conf`	Topological Descriptors of Histology Images. MLMI Nikhil Singh, Heather D. Couture, J. S. Marron, Charles M. Perou, Marc Niethammer
2013	J	`jnl`	A Locally Adaptive Regularization Based on Anisotropic Diffusion for Deformable Image Registration of Sliding Organs. IEEE Trans. Medical Imaging Danielle F. Pace, Stephen R. Aylward, Marc Niethammer
2013	—	`conf`	A pediatric airway atlas and its application in subglottic stenosis. ISBI Yi Hong, Marc Niethammer, Johan Andruejol, Julia S. Kimbell, Elizabeth Pitkin, Richard Superfine, Stephanie Davis, Carlton J. Zdanski, Brad Davis
2013	B	`conf`	Cortical correspondence via sulcal curve-constrained spherical registration with application to Macaque studies. Image Processing Ilwoo Lyu, Sun Hyung Kim, Joon-Kyung Seong, Sang Wook Yoo, Alan C. Evans, Yundi Shi, Mar Sanchez, Marc Niethammer, Martin A. Styner
2013	—	`conf`	Diffusion Propagator Estimation Using Radial Basis Functions. CDMRI/MMBC@MICCAI Yogesh Rathi, Marc Niethammer, Frederik B. Laun, Kawin Setsompop, Oleg V. Michailovich, Patricia Ellen Grant, Carl-Fredrik Westin
2013	—	`conf`	Diseased Region Detection of Longitudinal Knee MRI Data. IPMI Chao Huang, Liang Shan, Cecil Charles, Marc Niethammer, Hongtu Zhu
2013	—	`conf`	Group-Wise Cortical Correspondence via Sulcal Curve-Constrained Entropy Minimization. IPMI Ilwoo Lyu, Sun Hyung Kim, Joon-Kyung Seong, Sang Wook Yoo, Alan C. Evans, Yundi Shi, Mar Sanchez, Marc Niethammer, Martin Andreas Styner
2013	—	`conf`	Large Deformation Diffeomorphic Registration of Diffusion-Weighted Images with Explicit Orientation Optimization. MICCAI (2) Pei Zhang, Marc Niethammer, Dinggang Shen, Pew-Thian Yap
2013	—	`conf`	Large Deformation Image Classification Using Generalized Locality-Constrained Linear Coding. MICCAI (1) Pei Zhang, Chong-Yaw Wee, Marc Niethammer, Dinggang Shen, Pew-Thian Yap
2013	J	`jnl`	Longitudinal Image Registration With Temporally-Dependent Image Similarity Measure. IEEE Trans. Medical Imaging Istvan Csapo, Brad Davis, Yundi Shi, Mar Sanchez, Martin Styner, Marc Niethammer
2013	—	`conf`	Longitudinal three-label segmentation of knee cartilage. ISBI Liang Shan, Cecil Charles, Marc Niethammer
2013	—	`conf`	Robust Multimodal Dictionary Learning. MICCAI (1) Tian Cao, Vladimir Jojic, Shannon Modla, Debbie Powell, Kirk Czymmek, Marc Niethammer
2013	J	`jnl`	Segmentation with area constraints. Medical Image Anal. Marc Niethammer, Christopher Zach
2013	—	`conf`	Sparse Scale-Space Decomposition of Volume Changes in Deformations Fields. MICCAI (2) Marco Lorenzi, Bjoern H. Menze, Marc Niethammer, Nicholas Ayache, Xavier Pennec
2013	—	`conf`	Studying Cerebral Vasculature Using Structure Proximity and Graph Kernels. MICCAI (2) Roland Kwitt, Danielle F. Pace, Marc Niethammer, Stephen R. Aylward
2013	—	`conf`	Weighted Functional Boxplot with Application to Statistical Atlas Construction. MICCAI (3) Yi Hong, Brad Davis, J. S. Marron, Roland Kwitt, Marc Niethammer
2012	—	`conf`	Automatic atlas-based three-label cartilage segmentation from MR knee images. MMBIA Liang Shan, Cecil Charles, Marc Niethammer
2012	—	`conf`	Automatic multi-atlas-based cartilage segmentation from knee MR images. ISBI Liang Shan, Cecil Charles, Marc Niethammer
2012	A*	`conf`	LQG-obstacles: Feedback control with collision avoidance for mobile robots with motion and sensing uncertainty. ICRA Jur van den Berg, David Wilkie, Stephen J. Guy, Marc Niethammer, Dinesh Manocha
2012	—	`conf`	Large Deformation Diffeomorphic Registration of Diffusion-Weighted Images. MICCAI (2) Pei Zhang, Marc Niethammer, Dinggang Shen, Pew-Thian Yap
2012	—	`conf`	Longitudinal Image Registration with Non-uniform Appearance Change. MICCAI (3) Istvan Csapo, Brad Davis, Yundi Shi, Mar Sanchez, Martin Styner, Marc Niethammer
2012	—	`conf`	Metamorphic Geodesic Regression. MICCAI (3) Yi Hong, Sarang C. Joshi, Mar Sanchez, Martin Styner, Marc Niethammer
2012	—	`conf`	Registration for Correlative Microscopy Using Image Analogies. WBIR Tian Cao, Christopher Zach, Shannon Modla, Debbie Powell, Kirk Czymmek, Marc Niethammer
2012	—	`conf`	Simple Geodesic Regression for Image Time-Series. WBIR Yi Hong, Yundi Shi, Martin Styner, Mar Sanchez, Marc Niethammer
2012	J	`jnl`	Simulation-Based Joint Estimation of Body Deformation and Elasticity Parameters for Medical Image Analysis. IEEE Trans. Medical Imaging Huai-Ping Lee, Mark Foskey, Marc Niethammer, Pavel Krajcevski, Ming C. Lin
2012	—	`ed.`	Spatio-temporal Image Analysis for Longitudinal and Time-Series Image Data - Second International Workshop, STIA 2012, Held in Conjunction with MICCAI 2012, Nice, France, October 1, 2012. Proceedings STIA Stanley Durrleman, Tom Fletcher, Guido Gerig, Marc Niethammer
2012	—	`conf`	Temporally-Dependent Image Similarity Measure for Longitudinal Analysis. WBIR Istvan Csapo, Brad Davis, Yundi Shi, Mar Sanchez, Martin Styner, Marc Niethammer
2011	J	`jnl`	An Optimal Control Approach for Texture Metamorphosis. Comput. Graph. Forum Ilknur Kabul, Stephen M. Pizer, Julian G. Rosenman, Marc Niethammer
2011	B	`conf`	An automated pipeline for cortical surface generation and registration of the cerebral cortex. Image Processing Wen Li, Luis Ibáñez, Arnaud Gelas, B. T. Thomas Yeo, Marc Niethammer, Nancy Andreasen, Vincent A. Magnotta
2011	B	`conf`	Automatic cortical thickness analysis on rodent brain. Image Processing Joohwi Lee, Cindy Ehlers, Fulton Crews, Marc Niethammer, François Budin, Beatriz Paniagua, Kathy Sulik, Josephine Johns, Martin Styner, Ipek Oguz
2011	—	`conf`	Deformable image registration of sliding organs using anisotropic diffusive regularization. ISBI Danielle F. Pace, Andinet Enquobahrie, Hua Yang, Stephen R. Aylward, Marc Niethammer
2011	—	`conf`	Geodesic Regression for Image Time-Series. MICCAI (2) Marc Niethammer, Yang Huang, François-Xavier Vialard
2011	—	`conf`	Geometric Metamorphosis. MICCAI (2) Marc Niethammer, Gabriel L. Hart, Danielle F. Pace, Paul M. Vespa, Andrei Irimia, John D. Van Horn, Stephen R. Aylward
2011	B	`conf`	Group-wise automatic mesh-based analysis of cortical thickness. Image Processing Clement Vachet, Heather Cody Hazlett, Marc Niethammer, Ipek Oguz, Joshua E. Cates, Ross T. Whitaker, Joseph Piven, Martin Styner
2011	—	`conf`	Sliding Geometries in Deformable Image Registration. Abdominal Imaging Danielle F. Pace, Marc Niethammer, Stephen R. Aylward
2010	—	`conf`	Appearance Normalization of Histology Slides. MLMI Marc Niethammer, David Borland, J. S. Marron, John T. Woosley, Nancy E. Thomas
2010	J	`jnl`	Attenuation Analysis of Lamb Waves Using the Chirplet Transform. EURASIP J. Adv. Signal Process. Florian Kerber, Helge Sprenger, Marc Niethammer, Kritsakorn Luangvilai, Laurence J. Jacobs
2010	B	`conf`	Automatic bone segmentation and alignment from MR knee images. Image Processing Liang Shan, Christopher Zach, Martin Styner, Cecil Charles, Marc Niethammer
2010	—	`conf`	Automatic three-label bone segmentation from knee MR images. ISBI Liang Shan, Christopher Zach, Marc Niethammer
2010	—	`conf`	DTI Connectivity by Segmentation. MIAR Marc Niethammer, Alexis Boucharin, Christopher Zach, Yundi Shi, Eric A. Maltbie, Mar Sanchez, Martin Styner
2010	—	`conf`	Physically-based deformable image registration with material property and boundary condition estimation. ISBI Huai-Ping Lee, Mark Foskey, Marc Niethammer, Ming C. Lin
2010	—	`conf`	User-driven 3D mesh region targeting. Image-Guided Procedures Peter Karasev, James G. Malcolm, Marc Niethammer, Ron Kikinis, Allen R. Tannenbaum
2009	—	`conf`	A Method for Normalizing Histology Slides for Quantitative Analysis. ISBI Marc Macenko, Marc Niethammer, J. S. Marron, David Borland, John T. Woosley, Xiaojun Guan, Charles Schmitt, Nancy E. Thomas
2009	—	`conf`	An optimal control approach for deformable registration. CVPR Workshops Gabriel L. Hart, Christopher Zach, Marc Niethammer
2009	—	`conf`	An optimal control approach for the registration of image time-series. CDC Marc Niethammer, Gabriel L. Hart, Christopher Zach
2009	A*	`conf`	Continuous maximal flows and Wulff shapes: Application to MRFs. CVPR Christopher Zach, Marc Niethammer, Jan-Michael Frahm
2009	—	`conf`	Cortical Correspondence with Probabilistic Fiber Connectivity. IPMI Ipek Oguz, Marc Niethammer, Joshua E. Cates, Ross T. Whitaker, P. Thomas Fletcher, Clement Vachet, Martin Styner
2009	—	`conf`	Globally Optimal Finsler Active Contours. DAGM-Symposium Christopher Zach, Liang Shan, Marc Niethammer
2009	J	`jnl`	Laplace-Beltrami eigenvalues and topological features of eigenfunctions for statistical shape analysis. Comput. Aided Des. Martin Reuter, Franz-Erich Wolter, Martha Elizabeth Shenton, Marc Niethammer
2009	J	`jnl`	Multidimensional classification of hippocampal shape features discriminates Alzheimer's disease and mild cognitive impairment from normal aging. NeuroImage Emilie Gerardin, Gaël Chételat, Marie Chupin, Rémi Cuingnet, Béatrice Desgranges, Hosung Kim, Marc Niethammer, Bruno Dubois, Stéphane Lehéricy, Line Garnero, Francis Eustache, Olivier Colliot
2009	J	`jnl`	Near-tubular fiber bundle segmentation for diffusion weighted imaging: Segmentation through frame reorientation. NeuroImage Marc Niethammer, Christopher Zach, John Melonakos, Allen R. Tannenbaum
2009	J	`jnl`	Quantitative examination of a novel clustering method using magnetic resonance diffusion tensor tractography. NeuroImage Aristotle N. Voineskos, Lauren J. O'Donnell, Nancy J. Lobaugh, Douglas Markant, Stephanie Ameis, Marc Niethammer, Benoit H. Mulsant, Bruce G. Pollock, James L. Kennedy, Carl-Fredrik Westin, Martha Elizabeth Shenton
2008	—	`conf`	Fast Global Labeling for Real-Time Stereo Using Multiple Plane Sweeps. VMV Christopher Zach, David Gallup, Jan-Michael Frahm, Marc Niethammer
2008	J	`jnl`	Geometric Observers for Dynamically Evolving Curves. IEEE Trans. Pattern Anal. Mach. Intell. Marc Niethammer, Patricio A. Vela, Allen R. Tannenbaum
2008	J	`jnl`	Knowledge-Based Segmentation for Tracking Through Deep Turbulence. IEEE Trans. Control. Syst. Technol. Patricio A. Vela, Marc Niethammer, Gallagher Pryor, Allen R. Tannenbaum, Robert Butts, Donald Washburn
2008	J	`jnl`	Restoration of DWI Data Using a Rician LMMSE Estimator. IEEE Trans. Medical Imaging Santiago Aja-Fernández, Marc Niethammer, Marek Kubicki, Martha Elizabeth Shenton, Carl-Fredrik Westin
2008	B	`conf`	Segmenting images analytically in shape space. Image Processing Yogesh Rathi, Samuel Dambreville, Marc Niethammer, James G. Malcolm, James J. Levitt, Martha Elizabeth Shenton, Allen R. Tannenbaum
2007	A	`conf`	A Variational Framework Combining Level-sets and Thresholding. BMVC Samuel Dambreville, Marc Niethammer, Anthony J. Yezzi, Allen R. Tannenbaum
2007	—	`conf`	A variational segmentation framework using active contours and thresholding. SIP Samuel Dambreville, Marc Niethammer, Anthony J. Yezzi, Allen R. Tannenbaum
2007	A	`conf`	Finsler Level Set Segmentation for Imagery in Oriented Domains. BMVC Vandana Mohan, John Melonakos, Allen R. Tannenbaum, Marc Niethammer, Marek Kubicki
2007	—	`conf`	Finsler Tractography for White Matter Connectivity Analysis of the Cingulum Bundle. MICCAI (1) John Melonakos, Vandana Mohan, Marc Niethammer, Kate Smith, Marek Kubicki, Allen R. Tannenbaum
2007	—	`conf`	Geodesic-Loxodromes for Diffusion Tensor Interpolation and Difference Measurement. MICCAI (1) Gordon L. Kindlmann, Raúl San José Estépar, Marc Niethammer, Steven Haker, Carl-Fredrik Westin
2007	—	`conf`	Global Medical Shape Analysis Using the Laplace-Beltrami Spectrum. MICCAI (1) Marc Niethammer, Martin Reuter, Franz-Erich Wolter, Sylvain Bouix, Niklas Peinecke, Min-Seong Koo, Martha Elizabeth Shenton
2007	C	`conf`	Global Medical Shape Analysis Using the Volumetric Laplace Spectrum. CW Martin Reuter, Marc Niethammer, Franz-Erich Wolter, Sylvain Bouix, Martha Elizabeth Shenton
2007	A*	`conf`	Locally-Constrained Region-Based Methods for DW-MRI Segmentation. ICCV John Melonakos, Marc Niethammer, Vandana Mohan, Marek Kubicki, James V. Miller, Allen R. Tannenbaum
2007	—	`conf`	Outlier Rejection for Diffusion Weighted Imaging. MICCAI (1) Marc Niethammer, Sylvain Bouix, Santiago Aja-Fernández, Carl-Fredrik Westin, Martha Elizabeth Shenton
2007	—	`conf`	Statistical Shape Analysis of Brain Structures Using Spherical Wavelets. ISBI Delphine Nain, Martin Andreas Styner, Marc Niethammer, James J. Levitt, Martha Elizabeth Shenton, Guido Gerig, Aaron F. Bobick, Allen R. Tannenbaum
2006	—	`conf`	A Laplace equation approach for shape comparison. Image-Guided Procedures Eric Pichon, Delphine Nain, Marc Niethammer
2006	J	`jnl`	Dynamic active contours for visual tracking. IEEE Trans. Autom. Control. Marc Niethammer, Allen R. Tannenbaum, Sigurd B. Angenent
2006	—	`conf`	Fiber Bundle Estimation and Parameterization. MICCAI (2) Marc Niethammer, Sylvain Bouix, Carl-Fredrik Westin, Martha Elizabeth Shenton
2006	—	`conf`	On Diffusion Tensor Estimation. EMBC Marc Niethammer, Raúl San José Estépar, Sylvain Bouix, Martha Shenton, Carl-Fredrik Westin
2006	—	`conf`	On diffusion tensor estimation. EMBC (Supplement) Marc Niethammer, Raúl San José Estépar, Sylvain Bouix, Martha Shenton, Carl-Fredrik Westin
2006	J	`jnl`	On the detection of simple points in higher dimensions using cubical homology. IEEE Trans. Image Process. Marc Niethammer, William D. Kalies, Konstantin Mischaikow, Allen R. Tannenbaum
2005	—	`conf`	Geometric Observers for Dynamically Evolving Curves. CDC/ECC Marc Niethammer, Patricio A. Vela, Allen R. Tannenbaum
2005	J	`jnl`	On the Evolution of Vector Distance Functions of Closed Curves. Int. J. Comput. Vis. Marc Niethammer, Patricio A. Vela, Allen R. Tannenbaum
2004	C	`conf`	Active contours and optical flow for automatic tracking of flying vehicles. ACC Jincheol Ha, Christopher V. Alvino, Gallagher Pryor, Marc Niethammer, Eric N. Johnson, Allen R. Tannenbaum
2004	J	`jnl`	Area-Based Medial Axis of Planar Curves. Int. J. Comput. Vis. Marc Niethammer, Santiago Betelú, Guillermo Sapiro, Allen R. Tannenbaum, Peter J. Giblin
2004	—	`conf`	Dynamic Geodesic Snakes for Visual Tracking. CVPR (1) Marc Niethammer, Allen R. Tannenbaum
2004	—	`—`	Dynamic Level Sets for Visual Tracking. Marc Niethammer
2003	—	`conf`	A stokes flow boundary integral measurement of tubular structure cross sections in two dimensions. ICIP (1) Marc Niethammer, Eric Pichon, Allen R. Tannenbaum, Peter J. Mucha
2003	—	`conf`	Color histogram equalization through mesh deformation. ICIP (2) Eric Pichon, Marc Niethammer, Guillermo Sapiro
2003	—	`conf`	Dynamic level sets for visual tracking. CDC Marc Niethammer, Allen R. Tannenbaum
2002	—	`conf`	Analysis of blood vessel topology by cubical homology. ICIP (2) Konstantin Mischaikow, Pawel Pilarczyk, William D. Kalies, Marc Niethammer, Andrew Stein, Allen R. Tannenbaum