Marc Baaden

39 papers B 2Misc 2Journal 25Unranked 8
YearRankTypeTitle / Venue / Authors
2025 J jnl
NOX Transmembrane Electron Transfer Is Governed by a Subtly Balanced, Self-Adjusting Charge Distribution.
J. Chem. Inf. Model.
Baptiste Etcheverry, Marc Baaden, Aurélien de la Lande, Fabien Cailliez
2024 J jnl
A Perspective on the Prospective Use of AI in Protein Structure Prediction.
J. Chem. Inf. Model.
Raphaelle Versini, Sujith Sritharan, Burcu Aykaç Fas, Thibault Tubiana, Sana Zineb Aimeur, Julien Henri, Marie Erard, Oliver Nüsse, Jessica Andreani, Marc Baaden, Patrick Fuchs, Tatiana Galochkina, Alexios Chatzigoulas, Zoe Cournia, Hubert Santuz, Sophie Sacquin-Mora, Antoine Taly
2024 — conf
Escape from PharmaZ: A Game to Boost Pharmacophore Learning Through Immersive Augmented Reality.
GALA
Iza Marfisi, Hubert Santuz, Camille Bisson, Marc Baaden, Nicolas Férey, Antoine Taly, Olivier Delalande
2024 J jnl
From complex data to clear insights: visualizing molecular dynamics trajectories.
Frontiers Bioinform.
Hayet Belghit, Mariano Spivak, Manuel Dauchez, Marc Baaden, Jessica Prévoteau-Jonquet
2024 B conf
GazeMolVR: Sharing Eye-Gaze Cues in a Collaborative VR Environment for Molecular Visualization.
MUM
Rajkumar Darbar, Hubert Santuz, Antoine Taly, Marc Baaden
2023 J jnl
A brief history of visualizing membrane systems in molecular dynamics simulations.
Frontiers Bioinform.
Robin A. Corey, Marc Baaden, Matthieu Chavent
2023 J jnl
State of the Art of Molecular Visualization in Immersive Virtual Environments.
Comput. Graph. Forum
David Kuták, Pere-Pau Vázquez, Tobias Isenberg, Michael Krone, Marc Baaden, Jan Byska, Barbora Kozlíková, Haichao Miao
2022 J jnl
Deep inside molecules - digital twins at the nanoscale.
Virtual Real. Intell. Hardw.
Marc Baaden
2022 J jnl
Design - a new way to look at old molecules.
J. Integr. Bioinform.
Davide Spalvieri, Anne-Marine Mauviel, Matthieu Lambert, Nicolas Férey, Sophie Sacquin-Mora, Matthieu Chavent, Marc Baaden
2022 J jnl
Design X Bioinformatics: a community-driven initiative to connect bioinformatics and design.
J. Integr. Bioinform.
Björn Sommer, Daisuke Inoue, Marc Baaden
2022 J jnl
Fast and Interactive Positioning of Proteins within Membranes.
Algorithms
André Lanrezac, Benoist Laurent, Hubert Santuz, Nicolas Férey, Marc Baaden
2021 J jnl
Lessons learned from urgent computing in Europe: Tackling the COVID-19 pandemic.
Proc. Natl. Acad. Sci. USA
Núria López, Luigi Del Debbio, Marc Baaden, Matej Praprotnik, Laura Grigori, Catarina Simões, Serge Bogaerts, Florian Berberich, Thomas Lippert, Janne Ignatius, Philippe Lavocat, Oriol Pineda, Maria Grazia Giuffreda, Sergi Girona, Dieter Kranzlmüller, Michael M. Resch, Gabriella Scipione, Thomas C. Schulthess
2019 — conf
QuickSES: A Library for Fast Computation of Solvent Excluded Surfaces.
MolVa@EuroVis
Xavier Martinez, Michael Krone, Marc Baaden
2018 J jnl
From Virtual Reality to Immersive Analytics in Bioinformatics.
J. Integr. Bioinform.
Björn Sommer, Marc Baaden, Michael Krone, Andrew J. Woods
2018 J jnl
MinOmics, an Integrative and Immersive Tool for Multi-Omics Analysis.
J. Integr. Bioinform.
Alexandre Maes, Xavier Martinez, Karen Druart, Benoist Laurent, Sean Guégan, Christophe H. Marchand, Stéphane D. Lemaire, Marc Baaden
2018 J jnl
Semantics for an Integrative and Immersive Pipeline Combining Visualization and Analysis of Molecular Data.
J. Integr. Bioinform.
Mikaël Trellet, Nicolas Férey, Jakub Flotynski, Marc Baaden, Patrick Bourdot
2018 J jnl
Ten simple rules to create a serious game, illustrated with examples from structural biology.
PLoS Comput. Biol.
Marc Baaden, Olivier Delalande, Nicolas Férey, Samuela Pasquali, Jérôme Waldispühl, Antoine Taly
2018 J jnl
Web Molecular Graphics: Emerging Technologies & Standards (NII Shonan Meeting 2018-19).
NII Shonan Meet. Rep.
Seán I. O'Donoghue, Masakazu Sekijima, Marc Baaden
2017 J jnl
10 simple rules to create a serious game, illustrated with examples from structural biology.
CoRR
Marc Baaden, Olivier Delalande, Nicolas Férey, Samuela Pasquali, Jérôme Waldispühl, Antoine Taly
2017 — conf
Molecular Visualization of Computational Biology Data: A Survey of Surveys.
EuroVis (Short Papers)
Naif Alharbi, Mohammad Alharbi, Xavier Martinez, Michael Krone, Alexander S. Rose, Marc Baaden, Robert S. Laramee, Matthieu Chavent
2017 J jnl
Visualization of Biomolecular Structures: State of the Art Revisited.
Comput. Graph. Forum
Barbora Kozlíková, Michael Krone, Martin Falk, Norbert Lindow, Marc Baaden, Daniel Baum, Ivan Viola, Július Parulek, Hans-Christian Hege
2016 J jnl
Visual Analysis of Biomolecular Cavities: State of the Art.
Comput. Graph. Forum
Michael Krone, Barbora Kozlíková, Norbert Lindow, Marc Baaden, Daniel Baum, Július Parulek, Hans-Christian Hege, Ivan Viola
2015 J jnl
Epock: rapid analysis of protein pocket dynamics.
Bioinform.
Benoist Laurent, Matthieu Chavent, Tristan Cragnolini, Anna Caroline E. Dahl, Samuela Pasquali, Philippe Derreumaux, Mark S. P. Sansom, Marc Baaden
2015 — conf
Visualization of Biomolecular Structures: State of the Art.
EuroVis (STARs)
Barbora Kozlíková, Michael Krone, Norbert Lindow, Martin Falk, Marc Baaden, Daniel Baum, Ivan Viola, Július Parulek, Hans-Christian Hege
2014 J jnl
A Cooperative Mechanism of Clotrimazoles in P450 Revealed by the Dissociation Picture of Clotrimazole from P450.
J. Chem. Inf. Model.
Mian Wang, Marc Baaden, Jianyi Wang, Zhiqun Liang
2014 — conf
Content-guided Navigation in Multimeric Molecular Complexes.
BIOIMAGING
Mikaël Trellet, Nicolas Férey, Marc Baaden, Patrick Bourdot
2014 — conf
UnityMol: Interactive scientific visualization for integrative biology.
LDAV
Sebastien Doutreligne, Tristan Cragnolini, Samuela Pasquali, Philippe Derreumaux, Marc Baaden
2013 J jnl
Formation of Raft-Like Assemblies within Clusters of Influenza Hemagglutinin Observed by MD Simulations.
PLoS Comput. Biol.
Daniel L. Parton, Alex Tek, Marc Baaden, Mark S. P. Sansom
2013 Misc conf
Interactive Molecular Dynamics: Scaling up to Large Systems.
ICCS
Matthieu Dreher, Marc Piuzzi, Ahmed Turki, Matthieu Chavent, Marc Baaden, Nicolas Férey, Sébastien Limet, Bruno Raffin, Sophie Robert
2011 J jnl
GPU-accelerated atom and dynamic bond visualization using hyperballs: A unified algorithm for balls, sticks, and hyperboloids.
J. Comput. Chem.
Matthieu Chavent, Antoine Vanel, Alex Tek, Bruno Lévy, Sophie Robert, Bruno Raffin, Marc Baaden
2011 J jnl
GPU-powered tools boost molecular visualization.
Briefings Bioinform.
Matthieu Chavent, Bruno Lévy, Michael Krone, Katrin Bidmon, Jean-Philippe Nomine, Thomas Ertl, Marc Baaden
2010 J jnl
How Cations Can Assist DNase I in DNA Binding and Hydrolysis.
PLoS Comput. Biol.
Marc Gueroult, Daniel Picot, Joséphine Abi-Ghanem, Brigitte Hartmann, Marc Baaden
2010 Misc conf
Multi-Resolution Approach for Interactively Locating Functionally Linked Ion Binding Sites by Steering Small Molecules into Electrostatic Potential Maps Using a Haptic Device.
Pacific Symposium on Biocomputing
Olivier Delalande, Nicolas Férey, Benoist Laurent, Marc Gueroult, Brigitte Hartmann, Marc Baaden
2010 — book
Simulations numériques de systèmes biologiques complexes : dynamique, structure et fonction de transporteurs, canaux et enzymes. (Numerical simulations of complex biological systems: dynamics, structure and function of transporters, channels and enzymes).
Marc Baaden
2009 J jnl
Complex molecular assemblies at hand via interactive simulations.
J. Comput. Chem.
Olivier Delalande, Nicolas Férey, Gilles Grasseau, Marc Baaden
2008 B conf
A VR framework for interacting with molecular simulations.
VRST
Nicolas Férey, Olivier Delalande, Gilles Grasseau, Marc Baaden
2008 — conf
From Interactive to Immersive Molecular Dynamics.
VRIPHYS
Nicolas Férey, Olivier Delalande, Gilles Grasseau, Marc Baaden
2007 — conf
Atomistic Modeling of the Membrane-Embedded Synaptic Fusion Complex: a Grand Challenge Project on the DEISA HPC Infrastructure.
PARCO
Elmar Krieger, Laurent Leger, Marie-Pierre Durrieu, Nada Taib, Peter Bond, Michel Laguerre, Richard Lavery, Mark S. P. Sansom, Marc Baaden
2003 — —
Etudes de molécules extractantes en solution et aux interfaces liquide-liquide : aspects structuraux et mécanistiques des effets de synergie.
Marc Baaden