Marc A. Martí-Renom

26 papers B 1C 1Journal 24
YearRankTypeTitle / Venue / Authors
2017 J jnl
Automatic analysis and 3D-modelling of Hi-C data using TADbit reveals structural features of the fly chromatin colors.
PLoS Comput. Biol.
François Serra, Davide Baù, Mike Goodstadt, David Castillo, Guillaume J. Filion, Marc A. Martí-Renom
2015 J jnl
Ligand-Target Prediction by Structural Network Biology Using nAnnoLyze.
PLoS Comput. Biol.
Francisco Martínez-Jiménez, Marc A. Martí-Renom
2013 J jnl
Target Prediction for an Open Access Set of Compounds Active against
PLoS Comput. Biol.
Francisco Martínez-Jiménez, George Papadatos, Lun Yang, Iain M. Wallace, Vinod Kumar, Ursula Pieper, Andrej Sali, James R. Brown, John P. Overington, Marc A. Martí-Renom
2013 J jnl
Using tertiary structure for the computation of highly accurate multiple RNA alignments with the SARA-Coffee package.
Bioinform.
Carsten Kemena, Giovanni Bussotti, Emidio Capriotti, Marc A. Martí-Renom, Cédric Notredame
2012 B conf
The Three-Dimensional Architecture of a Bacterial Genome and Its Alteration by Genetic Perturbation.
RECOMB
Marc A. Martí-Renom
2011 J jnl
All-atom knowledge-based potential for RNA structure prediction and assessment.
Bioinform.
Emidio Capriotti, Tomás Norambuena, Marc A. Martí-Renom, Francisco Melo
2011 J jnl
Bridging the Resolution Gap in Structural Modeling of 3D Genome Organization.
PLoS Comput. Biol.
Marc A. Martí-Renom, Leonid A. Mirny
2010 J jnl
Quantifying the relationship between sequence and three-dimensional structure conservation in RNA.
BMC Bioinform.
Emidio Capriotti, Marc A. Martí-Renom
2009 J jnl
MODBASE, a database of annotated comparative protein structure models and associated resources.
Nucleic Acids Res.
Ursula Pieper, Narayanan Eswar, Ben M. Webb, David Eramian, Libusha Kelly, David T. Barkan, Hannah Carter, Parminder Mankoo, Rachel Karchin, Marc A. Martí-Renom, Fred P. Davis, Andrej Sali
2009 J jnl
ModLink+: improving fold recognition by using protein-protein interactions.
Bioinform.
Oriol Fornes, Ramon Aragues, Jordi Espadaler, Marc A. Martí-Renom, Andrej Sali, Baldo Oliva
2009 J jnl
SARA: a server for function annotation of RNA structures.
Nucleic Acids Res.
Emidio Capriotti, Marc A. Martí-Renom
2008 J jnl
Prediction of enzyme function by combining sequence similarity and protein interactions.
BMC Bioinform.
Jordi Espadaler, Narayanan Eswar, Enrique Querol, Francesc X. Avilés, Andrej Sali, Marc A. Martí-Renom, Baldomero Oliva
2008 C conf
RNA structure alignment by a unit-vector approach.
ECCB
Emidio Capriotti, Marc A. Martí-Renom
2007 J jnl
Characterization of Protein Hubs by Inferring Interacting Motifs from Protein Interactions.
PLoS Comput. Biol.
Ramon Aragues, Andrej Sali, Jaume Bonet, Marc A. Martí-Renom, Baldo Oliva
2007 J jnl
DBAli tools: mining the protein structure space.
Nucleic Acids Res.
Marc A. Martí-Renom, Ursula Pieper, Mallur S. Madhusudhan, Andrea Rossi, Narayanan Eswar, Fred P. Davis, Fátima Al-Shahrour, Joaquín Dopazo, Andrej Sali
2007 J jnl
The AnnoLite and AnnoLyze programs for comparative annotation of protein structures.
BMC Bioinform.
Marc A. Martí-Renom, Andrea Rossi, Fátima Al-Shahrour, Fred P. Davis, Ursula Pieper, Joaquín Dopazo, Andrej Sali
2006 J jnl
MODBASE: a database of annotated comparative protein structure models and associated resources.
Nucleic Acids Res.
Ursula Pieper, Narayanan Eswar, Fred P. Davis, Hannes Braberg, Mallur S. Madhusudhan, Andrea Rossi, Marc A. Martí-Renom, Rachel Karchin, Ben M. Webb, David Eramian, Min-Yi Shen, Libusha Kelly, Francisco Melo, Andrej Sali
2004 J jnl
MODBASE, a database of annotated comparative protein structure models, and associated resources.
Nucleic Acids Res.
Ursula Pieper, Narayanan Eswar, Hannes Braberg, Mallur S. Madhusudhan, Fred P. Davis, Ashley C. Stuart, Nebojsa Mirkovic, Andrea Rossi, Marc A. Martí-Renom, András Fiser, Ben M. Webb, Daniel M. Greenblatt, Conrad C. Huang, Thomas E. Ferrin, Andrej Sali
2003 J jnl
EVA: evaluation of protein structure prediction servers.
Nucleic Acids Res.
Ingrid Y. Y. Koh, Volker A. Eyrich, Marc A. Martí-Renom, Dariusz Przybylski, Mallur S. Madhusudhan, Narayanan Eswar, Osvaldo Graña, Florencio Pazos, Alfonso Valencia, Andrej Sali, Burkhard Rost
2003 J jnl
ModView, visualization of multiple protein sequences and structures.
Bioinform.
Valentin A. Ilyin, Ursula Pieper, Ashley C. Stuart, Marc A. Martí-Renom, Linda McMahan, Andrej Sali
2003 J jnl
Tools for comparative protein structure modeling and analysis.
Nucleic Acids Res.
Narayanan Eswar, Bino John, Nebojsa Mirkovic, András Fiser, Valentin A. Ilyin, Ursula Pieper, Ashley C. Stuart, Marc A. Martí-Renom, Mallur S. Madhusudhan, Bozidar Yerkovich, Andrej Sali
2001 J jnl
Classification of protein disulphide-bridge topologies.
J. Comput. Aided Mol. Des.
José M. Mas, Patrick Aloy, Marc A. Martí-Renom, Baldomero Oliva, R. de Llorens, Francesc X. Avilés, Enrique Querol
2001 J jnl
DBAli: a database of protein structure alignments.
Bioinform.
Marc A. Martí-Renom, Valentin A. Ilyin, Andrej Sali
2001 J jnl
EVA: continuous automatic evaluation of protein structure prediction servers.
Bioinform.
Volker A. Eyrich, Marc A. Martí-Renom, Dariusz Przybylski, Mallur S. Madhusudhan, András Fiser, Florencio Pazos, Alfonso Valencia, Andrej Sali, Burkhard Rost
2000 J jnl
ASAP: analysis of peptide composition.
Bioinform.
Xavier Serra-Hartmann, Xavier Rebordosa, Jaume Piñol, Enrique Querol, Marc A. Martí-Renom
2000 J jnl
Refinement of modelled structures by knowledge-based energy profiles and secondary structure prediction: Application to the human procarboxypeptidase A2.
J. Comput. Aided Mol. Des.
Patrick Aloy, José M. Mas, Marc A. Martí-Renom, Enrique Querol, Francesc X. Avilés, Baldomero Oliva