Manuel Rueda

15 papers Journal 14Unranked 1
YearRankTypeTitle / Venue / Authors
2025 — conf
HERO-Genomics: An Ontology for Integration and Access of Multicenter Genomic Data.
SWAT4HCLS
Mirco Cazzaro, Ivo Glynne Gut, Laura Menotti, Manuel Rueda, Gianmaria Silvello
2024 J jnl
Convert-Pheno: A software toolkit for the interconversion of standard data models for phenotypic data.
J. Biomed. Informatics
Manuel Rueda, Ivo C. Leist, Ivo Glynne Gut
2024 J jnl
Pheno-Ranker: a toolkit for comparison of phenotypic data stored in GA4GH standards and beyond.
BMC Bioinform.
Ivo C. Leist, María Rivas-Torrubia, Marta E. Alarcón-Riquelme, Guillermo Barturen, Ivo Glynne Gut, Manuel Rueda
2022 J jnl
A quality control portal for sequencing data deposited at the European genome-phenome archive.
Briefings Bioinform.
Dietmar Fernández-Orth, Manuel Rueda, Babita Singh, Mauricio Moldes, Aina Jene, Marta Ferri, Claudia Vasallo, Lauren A. Fromont, Arcadi Navarro, Jordi Rambla
2022 J jnl
Beacon v2 Reference Implementation: a toolkit to enable federated sharing of genomic and phenotypic data.
Bioinform.
Manuel Rueda, Roberto Ariosa, Mauricio Moldes, Jordi Rambla
2022 J jnl
The European Genome-phenome Archive in 2021.
Nucleic Acids Res.
Mallory Ann Freeberg, Lauren A. Fromont, Teresa D'altri, Anna Foix Romero, Jorge Izquierdo Ciges, Aina Jene, Giselle Kerry, Mauricio Moldes, Roberto Ariosa, Silvia Bahena, Daniel Barrowdale, Marcos Casado Barbero, Dietmar Fernández-Orth, Carles Garcia-Linares, Emilio Garcia-Rios, Frédéric Haziza, Bela Juhasz, Oscar Martinez Llobet, Gemma Milla, Anand Mohan, Manuel Rueda, Aravind Sankar, Dona Shaju, Ashutosh Shimpi, Babita Singh, Coline Thomas, Sabela de la Torre, Umuthan Uyan, Claudia Vasallo, Paul Flicek, Roderic Guigó, Arcadi Navarro, Helen E. Parkinson, Thomas M. Keane, Jordi Rambla
2017 J jnl
From Homology Models to a Set of Predictive Binding Pockets-a 5-HT
J. Chem. Inf. Model.
Dawid Warszycki, Manuel Rueda, Stefan Mordalski, Kurt Kristiansen, Grzegorz Satala, Krzysztof Rataj, Zdzislaw Chilmonczyk, Ingebrigt Sylte, Ruben Abagyan, Andrzej J. Bojarski
2017 J jnl
SG-ADVISER mtDNA: a web server for mitochondrial DNA annotation with data from 200 samples of a healthy aging cohort.
BMC Bioinform.
Manuel Rueda, Ali Torkamani
2013 J jnl
Exploring Early Stages of the Chemical Unfolding of Proteins at the Proteome Scale.
PLoS Comput. Biol.
Michela Candotti, Alberto Pérez, Carles Ferrer-Costa, Manuel Rueda, Tim Meyer, Josep Lluís Gelpí, Modesto Orozco
2012 J jnl
ALiBERO: Evolving a Team of Complementary Pocket Conformations Rather than a Single Leader.
J. Chem. Inf. Model.
Manuel Rueda, Maxim Totrov, Ruben Abagyan
2010 J jnl
Recipes for the Selection of Experimental Protein Conformations for Virtual Screening.
J. Chem. Inf. Model.
Manuel Rueda, Giovanni Bottegoni, Ruben Abagyan
2010 J jnl
SimiCon: a web tool for protein-ligand model comparison through calculation of equivalent atomic contacts.
Bioinform.
Manuel Rueda, Vsevolod Katritch, Eugene Raush, Ruben Abagyan
2009 J jnl
Consistent Improvement of Cross-Docking Results Using Binding Site Ensembles Generated with Elastic Network Normal Modes.
J. Chem. Inf. Model.
Manuel Rueda, Giovanni Bottegoni, Ruben Abagyan
2009 J jnl
FlexServ: an integrated tool for the analysis of protein flexibility.
Bioinform.
Jordi Camps, Oliver Carrillo, Agustí Emperador, Laura Orellana, Adam Hospital, Manuel Rueda, Damjan Cicin-Sain, Marco D'Abramo, Josep Lluís Gelpí, Modesto Orozco
2007 J jnl
A consensus view of protein dynamics.
Proc. Natl. Acad. Sci. USA
Manuel Rueda, Carles Ferrer-Costa, Tim Meyer, Alberto Pérez, Jordi Camps, Adam Hospital, Josep Lluís Gelpí, Modesto Orozco