Manuel Holtgrewe

17 papers A 2Journal 14
YearRankTypeTitle / Venue / Authors
2022 J jnl
ClearCNV: CNV calling from NGS panel data in the presence of ambiguity and noise.
Bioinform.
Vinzenz May, Leonard Koch, Björn Fischer-Zirnsak, Denise Horn, Petra Gehle, Uwe Kornak, Dieter Beule, Manuel Holtgrewe
2021 J jnl
Sustainable data analysis with Snakemake.
F1000Research
Felix Mölder, Kim Philipp Jablonski, Brice Letcher, Michael B. Hall, Christopher Tomkins-Tinch, Vanessa V. Sochat, Jan Forster, Soohyun Lee, Sven Twardziok, Alexander Kanitz, Andreas Wilm, Manuel Holtgrewe, Sven Rahmann, Sven Nahnsen, Johannes Köster
2020 J jnl
DigestiFlow: from BCL to FASTQ with ease.
Bioinform.
Manuel Holtgrewe, Clemens Messerschmidt, Mikko Nieminen, Dieter Beule
2020 J jnl
SODAR Core: a Django-based framework for scientific data management and analysis web apps.
J. Open Source Softw.
Mikko Nieminen, Oliver Stolpe, Franziska Schumann, Manuel Holtgrewe, Dieter Beule
2020 J jnl
VarFish: comprehensive DNA variant analysis for diagnostics and research.
Nucleic Acids Res.
Manuel Holtgrewe, Oliver Stolpe, Mikko Nieminen, Stefan Mundlos, Alexej Knaus, Uwe Kornak, Dominik Seelow, Lara Segebrecht, Malte Spielmann, Björn Fischer-Zirnsak, Felix Boschann, Ute Scholl, Nadja Ehmke, Dieter Beule
2019 J jnl
AltamISA: a Python API for ISA-Tab files.
J. Open Source Softw.
Mathias Kuhring, Mikko Nieminen, Jennifer Kirwan, Dieter Beule, Manuel Holtgrewe
2017 J jnl
HLA-MA: simple yet powerful matching of samples using HLA typing results.
Bioinform.
Clemens Messerschmidt, Manuel Holtgrewe, Dieter Beule
2016 J jnl
VCFPy: a Python 3 library with good support for both reading and writing VCF.
J. Open Source Softw.
Manuel Holtgrewe, Dieter Beule
2015 — —
Engineering Algorithms for Personal Genome Pipelines.
Manuel Holtgrewe
2015 J jnl
Methods for the detection and assembly of novel sequence in high-throughput sequencing data.
Bioinform.
Manuel Holtgrewe, Léon Kuchenbecker, Knut Reinert
2014 J jnl
Fiona: a parallel and automatic strategy for read error correction.
Bioinform.
Marcel H. Schulz, David Weese, Manuel Holtgrewe, Viktoria Dimitrova, Sijia Niu, Knut Reinert, Hugues Richard
2014 J jnl
Genome alignment with graph data structures: a comparison.
BMC Bioinform.
Birte Kehr, Kathrin Trappe, Manuel Holtgrewe, Knut Reinert
2012 J jnl
RazerS 3: Faster, fully sensitive read mapping.
Bioinform.
David Weese, Manuel Holtgrewe, Knut Reinert
2011 J jnl
A Novel And Well-Defined Benchmarking Method For Second Generation Read Mapping.
BMC Bioinform.
Manuel Holtgrewe, Anne-Katrin Emde, David Weese, Knut Reinert
2010 A conf
Engineering a scalable high quality graph partitioner.
IPDPS
Manuel Holtgrewe, Peter Sanders, Christian Schulz
2010 A conf
Simple and Fast Nearest Neighbor Search.
ALENEX
Marcel Birn, Manuel Holtgrewe, Peter Sanders, Johannes Singler
2009 J jnl
Engineering a Scalable High Quality Graph Partitioner
CoRR
Manuel Holtgrewe, Peter Sanders, Christian Schulz