Manuel C. Peitsch

30 papers A 1B 2Misc 2Journal 22Unranked 3

Year	Rank	Type	Title / Venue / Authors
2019	J	`jnl`	GladiaTOX: GLobal Assessment of Dose-IndicAtor in TOXicology. Bioinform. Vincenzo Belcastro, Stephane Cano, Diego Marescotti, Stefano Acali, Carine Poussin, Ignacio Gonzalez-Suarez, Florian Martin, Filipe Bonjour, Nikolai V. Ivanov, Manuel C. Peitsch, Julia Hoeng
2019	J	`jnl`	NPA: an R package for computing network perturbation amplitudes using gene expression data and two-layer networks. BMC Bioinform. Florian Martin, Sylvain Gubian, Marja Talikka, Julia Hoeng, Manuel C. Peitsch
2019	Misc	`conf`	Systems Toxicology Approach to Unravel Early Indicators of Squamous Cell Carcinoma Rate in Rat Nasal Epithelium Induced by Formaldehyde Exposure. PACBB Florian Martin, Marja Talikka, Julia Hoeng, Manuel C. Peitsch
2017	J	`jnl`	Supporting evidence-based analysis for modified risk tobacco products through a toxicology data-sharing infrastructure. F1000Research Stéphanie Boué, Thomas E. Exner, Samik Ghosh, Vincenzo Belcastro, Joh Dokler, David Page, Akash R. Boda, Filipe Bonjour, Barry J. Hardy, Patrick Vanscheeuwijck, Julia Hoeng, Manuel C. Peitsch
2016	J	`jnl`	The BEL information extraction workflow (BELIEF): evaluation in the BioCreative V BEL and IAT track. Database J. Biol. Databases Curation Sumit Madan, Sven Hodapp, Philipp Senger, Sam Ansari, Justyna Szostak, Julia Hoeng, Manuel C. Peitsch, Juliane Fluck
2016	J	`jnl`	Training and evaluation corpora for the extraction of causal relationships encoded in biological expression language (BEL). Database J. Biol. Databases Curation Juliane Fluck, Sumit Madan, Sam Ansari, Alpha Tom Kodamullil, Reagon Karki, Majid Rastegar-Mojarad, Natalie L. Catlett, William Hayes, Justyna Szostak, Julia Hoeng, Manuel C. Peitsch
2015	J	`jnl`	A crowd-sourcing approach for the construction of species-specific cell signaling networks. Bioinform. Erhan Bilal, Theodore Sakellaropoulos, Challenge Participants, Ioannis N. Melas, Dimitris E. Messinis, Vincenzo Belcastro, Kahn Rhrissorrakrai, Pablo Meyer, Raquel Norel, Anita Iskandar, Elise Blaese, John Jeremy Rice, Manuel C. Peitsch, Julia Hoeng, Gustavo Stolovitzky, Leonidas G. Alexopoulos, Carine Poussin
2015	J	`jnl`	Causal biological network database: a comprehensive platform of causal biological network models focused on the pulmonary and vascular systems. Database J. Biol. Databases Curation Stéphanie Boué, Marja Talikka, Jurjen Willem Westra, William Hayes, Anselmo Di Fabio, Jennifer Park, Walter K. Schlage, Alain Sewer, Brett Fields, Sam Ansari, Florian Martin, Emilija Veljkovic, Renée Kenney, Manuel C. Peitsch, Julia Hoeng
2015	J	`jnl`	Construction of biological networks from unstructured information based on a semi-automated curation workflow. Database J. Biol. Databases Curation Justyna Szostak, Sam Ansari, Sumit Madan, Juliane Fluck, Marja Talikka, Anita Iskandar, Hector De Leon, Martin Hofmann-Apitius, Manuel C. Peitsch, Julia Hoeng
2015	Misc	`conf`	Reputation-Based Collaborative Network Biology. Pacific Symposium on Biocomputing Jean Binder, Stéphanie Boué, Anselmo Di Fabio, Brett Fields, William Hayes, Julia Hoeng, Jennifer Park, Manuel C. Peitsch
2015	—	`conf`	The systems toxicology challenge: how to leverage omics data to predict mechanisms of toxicity? BCB Nikolai V. Ivanov, Carine Poussin, Stéphanie Boué, Florian Martin, Alain Sewer, Bjoern Titz, Manuel C. Peitsch, Julia Hoeng
2015	J	`jnl`	Understanding the limits of animal models as predictors of human biology: lessons learned from the sbv IMPROVER Species Translation Challenge. Bioinform. Kahn Rhrissorrakrai, Vincenzo Belcastro, Erhan Bilal, Raquel Norel, Carine Poussin, Carole Mathis, Rémi H. J. Dulize, Nikolai V. Ivanov, Leonidas G. Alexopoulos, John Jeremy Rice, Manuel C. Peitsch, Gustavo Stolovitzky, Pablo Meyer, Julia Hoeng
2015	J	`jnl`	Where are we at regarding species translation? A review of the sbv IMPROVER challenge. Bioinform. Julia Hoeng, Manuel C. Peitsch, Pablo Meyer, Igor Jurisica
2014	J	`jnl`	CSEO - the Cigarette Smoke Exposure Ontology. J. Biomed. Semant. Erfan Younesi, Sam Ansari, Michaela Gündel, Shiva Ahmadi, Chris Coggins, Julia Hoeng, Martin Hofmann-Apitius, Manuel C. Peitsch
2014	J	`jnl`	Quantification of biological network perturbations for mechanistic insight and diagnostics using two-layer causal models. BMC Bioinform. Florian Martin, Alain Sewer, Marja Talikka, Yang Xiang, Julia Hoeng, Manuel C. Peitsch
2013	—	`conf`	BEL Networks Derived from Qualitative Translations of BioNLP Shared Task Annotations. BioNLP@ACL Juliane Fluck, Alexander Klenner, Sumit Madan, Sam Ansari, Tamara Bobic, Julia Hoeng, Martin Hofmann-Apitius, Manuel C. Peitsch
2013	J	`jnl`	Strengths and limitations of microarray-based phenotype prediction: lessons learned from the IMPROVER Diagnostic Signature Challenge. Bioinform. Adi L. Tarca, Mario Lauria, Michael Unger, Erhan Bilal, Stéphanie Boué, Kushal Kumar Dey, Julia Hoeng, Heinz Koeppl, Florian Martin, Pablo Meyer, Preetam Nandy, Raquel Norel, Manuel C. Peitsch, John Jeremy Rice, Roberto Romero, Gustavo Stolovitzky, Marja Talikka, Yang Xiang, Christoph Zechner, Improver Dsc Collaborators
2012	J	`jnl`	Assessment of network perturbation amplitudes by applying high-throughput data to causal biological networks. BMC Syst. Biol. Florian Martin, Ty M. Thomson, Alain Sewer, David A. Drubin, Carole Mathis, Dirk Weisensee, Dexter Pratt, Julia Hoeng, Manuel C. Peitsch
2012	J	`jnl`	Building an R&D chemical registration system. J. Cheminformatics Elyette Martin, Aurélien Monge, Jacques-Antoine Duret, Federico Gualandi, Manuel C. Peitsch, Pavel Pospisil
2012	J	`jnl`	Industrial methodology for process verification in research (IMPROVER): toward systems biology verification. Bioinform. Pablo Meyer, Julia Hoeng, John Jeremy Rice, Raquel Norel, Jörg Sprengel, Katrin Stolle, Thomas Bonk, Stephanie Corthesy, Ajay K. Royyuru, Manuel C. Peitsch, Gustavo Stolovitzky
2011	J	`jnl`	A computable cellular stress network model for non-diseased pulmonary and cardiovascular tissue. BMC Syst. Biol. Walter K. Schlage, Jurjen Willem Westra, Stephan Gebel, Natalie L. Catlett, Carole Mathis, Brian P. Frushour, Arnd Hengstermann, Aaron A. Van Hooser, Carine Poussin, Ben Wong, Michael Lietz, Jennifer Park, David A. Drubin, Emilija Veljkovic, Manuel C. Peitsch, Julia Hoeng, Renee Deehan
2011	J	`jnl`	Construction of a computable cell proliferation network focused on non-diseased lung cells. BMC Syst. Biol. Jurjen Willem Westra, Walter K. Schlage, Brian P. Frushour, Stephan Gebel, Natalie L. Catlett, Wan-Jiang Han, Sean F. Eddy, Arnd Hengstermann, Andrea L. Matthews, Carole Mathis, Rosemarie B. Lichtner, Carine Poussin, Marja Talikka, Emilija Veljkovic, Aaron A. Van Hooser, Benjamin Wong, Michael J. Maria, Manuel C. Peitsch, Renee Deehan, Julia Hoeng
2007	—	`conf`	Tandem Mass Spectrometry Protein Identification on a PC Grid. HealthGrid Dominique Zosso, Michael Podvinec, Markus Müller, Ruedi Aebersold, Manuel C. Peitsch, Torsten Schwede
2006	B	`conf`	Grid Computing in Drug Discovery. CCGRID Manuel C. Peitsch
2006	B	`conf`	The SwissBioGrid Project: Objectivse, Preliminary Results and Lessons Learned. e-Science Michael Podvinec, Sergio Maffioletti, Peter Z. Kunszt, Konstantin Arnold, Lorenzo Cerutti, Bruno Nyffeler, Ralph Schlapbach, Can Türker, Heinz Stockinger, Arthur J. Thomas, Manuel C. Peitsch, Torsten Schwede
2005	J	`jnl`	Genome Size and Numbers of Biological Functions. Trans. Comp. Sys. Biology Ernest Feytmans, Denis Noble, Manuel C. Peitsch
2003	J	`jnl`	SWISS-MODEL: an automated protein homology-modeling server. Nucleic Acids Res. Torsten Schwede, Jürgen Kopp, Nicolas Guex, Manuel C. Peitsch
2002	J	`jnl`	About the use of protein models. Bioinform. Manuel C. Peitsch
2001	J	`jnl`	MDB: a database system utilizing automatic construction of modules and STAR-derived universal language. Bioinform. Eugenia Migliavacca, Alexei A. Adzhubei, Manuel C. Peitsch
1997	A	`conf`	Large Scale Protein Modeling and Model Repository. ISMB Manuel C. Peitsch