Mansoor A. S. Saqi

28 papers B 2Journal 23Unranked 3
YearRankTypeTitle / Venue / Authors
2019 J jnl
Navigating the disease landscape: knowledge representations for contextualizing molecular signatures.
Briefings Bioinform.
Mansoor A. S. Saqi, Artem Lysenko, Yike Guo, Tatsuhiko Tsunoda, Charles Auffray
2018 J jnl
A computational framework for complex disease stratification from multiple large-scale datasets.
BMC Syst. Biol.
Bertrand De Meulder, Diane Lefaudeux, Aruna T. Bansal, Alexander Mazein, Amphun Chaiboonchoe, Hassan Ahmed, Irina Balaur, Mansoor A. S. Saqi, Johann Pellet, Stéphane Ballereau, Nathanaël Lemonnier, Kai Sun, Ioannis Pandis, Xian Yang, Manohara Batuwitage, Kosmas Kretsos, Jonathan van Eyll, Alun Bedding, Timothy Davison, Paul Dodson, Christopher Larminie, Anthony D. Postle, Julie Corfield, Ratko Djukanovic, Kian Fan Chung, Ian M. Adcock, Yike Guo, Peter J. Sterk, Alexander Manta, Anthony Rowe, Frédéric Baribaud, Charles Auffray
2017 J jnl
EpiGeNet: A Graph Database of Interdependencies Between Genetic and Epigenetic Events in Colorectal Cancer.
J. Comput. Biol.
Irina Balaur, Mansoor A. S. Saqi, Ana Barat, Artem Lysenko, Alexander Mazein, Christopher J. Rawlings, Heather J. Ruskin, Charles Auffray
2017 J jnl
Recon2Neo4j: applying graph database technologies for managing comprehensive genome-scale networks.
Bioinform.
Irina Balaur, Alexander Mazein, Mansoor A. S. Saqi, Artem Lysenko, Christopher J. Rawlings
2016 J jnl
Representing and querying disease networks using graph databases.
BioData Min.
Artem Lysenko, Irina A. Roznovat, Mansoor A. S. Saqi, Alexander Mazein, Christopher J. Rawlings, Charles Auffray
2016 J jnl
STON: exploring biological pathways using the SBGN standard and graph databases.
BMC Bioinform.
Vasundra Touré, Alexander Mazein, Dagmar Waltemath, Irina Balaur, Mansoor A. S. Saqi, Ron Henkel, Johann Pellet, Charles Auffray
2014 J jnl
Protein interaction networks associated with cardiovascular disease and cancer: exploring the effect of bias on shared network properties.
Int. J. Data Min. Bioinform.
Richard J. B. Dobson, Patricia B. Munroe, Mark J. Caulfield, Mansoor A. S. Saqi
2013 B conf
Integrating Multiple Studies of Wheat Microarray Data to Identify Treatment-Specific Regulatory Networks.
IDA
Valeria Bo, Artem Lysenko, Mansoor A. S. Saqi, Dimah Z. Habash, Allan Tucker
2012 — conf
Detection of Multi-clustered Genes and Community Structure for the Plant Pathogenic Fungus Fusarium graminearum.
CMSB
Laura Bennett, Artem Lysenko, Lazaros G. Papageorgiou, Martin Urban, Kim E. Hammond-Kosack, Christopher J. Rawlings, Mansoor A. S. Saqi, Sophia Tsoka
2011 J jnl
AIGO: Towards a unified framework for the Analysis and the Inter-comparison of GO functional annotations.
BMC Bioinform.
Michael Defoin-Platel, Matthew Morritt Hindle, Artem Lysenko, Stephen J. Powers, Dimah Z. Habash, Christopher J. Rawlings, Mansoor A. S. Saqi
2011 J jnl
Assessing the functional coherence of modules found in multiple-evidence networks from Arabidopsis.
BMC Bioinform.
Artem Lysenko, Michael Defoin-Platel, Keywan Hassani-Pak, Jan Taubert, Charlie Hodgman, Christopher J. Rawlings, Mansoor A. S. Saqi
2010 J jnl
Data integration for plant genomics - exemplars from the integration of
Briefings Bioinform.
Artem Lysenko, Matthew Morritt Hindle, Jan Taubert, Mansoor A. S. Saqi, Christopher J. Rawlings
2010 — conf
Handling Missing Features with Boosting Algorithms for Protein-Protein Interaction Prediction.
DILS
Fabrizio Smeraldi, Michael Defoin-Platel, Mansoor A. S. Saqi
2009 J jnl
An approach to pathway reconstruction using whole genome metabolic models and sensitive sequence searching.
J. Integr. Bioinform.
Mansoor A. S. Saqi, Richard J. B. Dobson, Preben Kraben, David A. Hodgson, David L. Wild
2009 J jnl
Data integration for plant genomics - exemplars from the integration of
Briefings Bioinform.
Artem Lysenko, Matthew Morritt Hindle, Jan Taubert, Mansoor A. S. Saqi, Christopher J. Rawlings
2009 J jnl
Global sequence properties for superfamily prediction: a machine learning approach.
J. Integr. Bioinform.
Richard J. B. Dobson, Patricia B. Munroe, Mark J. Caulfield, Mansoor A. S. Saqi
2008 — conf
Combining Protein-Protein Interaction (PPI) Network and Sequence Attributes for Predicting Hypertension Related Proteins.
BIRD
Richard J. B. Dobson, Patricia B. Munroe, Charles A. Mein, Mark J. Caulfield, Mansoor A. S. Saqi
2006 J jnl
A high level interface to SCOP and ASTRAL implemented in Python.
BMC Bioinform.
James A. Casbon, Gavin E. Crooks, Mansoor A. S. Saqi
2006 J jnl
Functional diversity within protein superfamilies.
J. Integr. Bioinform.
James A. Casbon, Mansoor A. S. Saqi
2006 J jnl
On single and multiple models of protein families for the detection of remote sequence relationships.
BMC Bioinform.
James A. Casbon, Mansoor A. S. Saqi
2006 J jnl
Predicting deleterious nsSNPs: an analysis of sequence and structural attributes.
BMC Bioinform.
Richard J. B. Dobson, Patricia B. Munroe, Mark J. Caulfield, Mansoor A. S. Saqi
2005 J jnl
S4: structure-based sequence alignments of SCOP superfamilies.
Nucleic Acids Res.
James A. Casbon, Mansoor A. S. Saqi
2004 J jnl
Analysis of superfamily specific profile-profile recognition accuracy.
BMC Bioinform.
James A. Casbon, Mansoor A. S. Saqi
2003 B conf
Spectral clustering of protein sequences.
IJCNN
Alberto Paccanaro, Chakra Chennubhotla, James A. Casbon, Mansoor A. S. Saqi
1999 J jnl
Protein analyst - a distributed object environment for protein sequence and structure analysis.
Bioinform.
Mansoor A. S. Saqi, David L. Wild, M. J. Hartshorn
1997 J jnl
DSC: public domain protein secondary structure predication.
Comput. Appl. Biosci.
Ross D. King, Mansoor A. S. Saqi, Roger A. Sayle, Michael J. E. Sternberg
1995 J jnl
PdbAlign, PdbDist and DistAlign: tools to aid in relating sequence variability to structure.
Comput. Appl. Biosci.
Roger A. Sayle, Mansoor A. S. Saqi, M. Weir, Andrew Lyall
1994 J jnl
PdbMotif--a tool for the automatic identification and display of motifs in protein structures.
Comput. Appl. Biosci.
Mansoor A. S. Saqi, Roger A. Sayle