Manos Papadakis

22 papers B 2C 1Journal 10Unranked 9
YearRankTypeTitle / Venue / Authors
2024 J jnl
Comput.
Michail Tsagris, Manos Papadakis, Abdulaziz Alenazi, Omar Alzeley
2018 J jnl
CoRR
Nikolaos Atreas, Nikolaos Karantzas, Manos Papadakis, Theodoros Stavropoulos
2018 J jnl
PeerJ Prepr.
Michail Tsagris, Manos Papadakis
2017 J jnl
Neuroinformatics
Pankaj K. Singh, Paul Hernandez-Herrera, Demetrio Labate, Manos Papadakis
2016 J jnl
Neuroinformatics
Pankaj K. Singh, Pooran Singh Negi, Fernanda Laezza, Manos Papadakis, Demetrio Labate
2015 J jnl
Neuroinformatics
Alberto Santamaría-Pang, Paul Hernandez-Herrera, Manos Papadakis, Peter Saggau, Ioannis A. Kakadiaris
2015 J jnl
Neuroinformatics
David Jiménez, Demetrio Labate, Ioannis A. Kakadiaris, Manos Papadakis
2015 conf
EMF-CRM@TPDL
Manos Papadakis, Martin Doerr
2014 conf
ISBI
Paul Hernandez-Herrera, Manos Papadakis, Ioannis A. Kakadiaris
2013 conf
ISBI
David Jiménez, Manos Papadakis, Demetrio Labate, Ioannis A. Kakadiaris
2012 conf
WIFS
Chengwei Huang, Boris A. Efraty, Uday Kurkure, Manos Papadakis, Shishir K. Shah, Ioannis A. Kakadiaris
2012 J jnl
IEEE Trans. Affect. Comput.
Dvijesh J. Shastri, Manos Papadakis, Panagiotis Tsiamyrtzis, Barbara Bass, Ioannis T. Pavlidis
2012 J jnl
IEEE Trans. Image Process.
Saurabh Jain, Manos Papadakis, Sanat Upadhyay, Robert Azencott
2012 conf
Abdominal Imaging
Sanat Upadhyay, Manos Papadakis, Saurabh Jain, Gregory Gladish, Ioannis A. Kakadiaris, Robert Azencott
2011 B conf
FG
Boris A. Efraty, Manos Papadakis, Adam Profitt, Shishir K. Shah, Ioannis A. Kakadiaris
2011 B conf
ICIP
Boris A. Efraty, Manos Papadakis, Adam Profitt, Shishir K. Shah, Ioannis A. Kakadiaris
2009 J jnl
Adv. Comput. Math.
Juan R. Romero, Simon K. Alexander, Shikha Baid, Saurabh Jain, Manos Papadakis
2007 conf
ISBI
Indika S. Walimuni, Donald J. Kouri, Manos Papadakis, Bernhard G. Bodmann
2005 conf
ICASSP (2)
Lixin Shen, Manos Papadakis, Ioannis A. Kakadiaris, Ioannis Konstantinidis, Donald Kouri, David K. Hoffman
2004 C conf
Computer Graphics International
Ioannis A. Kakadiaris, Lixin Shen, Manos Papadakis, Ioannis Konstantinidis, Donald J. Kouri, David K. Hoffman
2003 conf
VisSym
K. Anderson, Ioannis A. Kakadiaris, Manos Papadakis, Donald J. Kouri, David K. Hoffman
2002 conf
DSP
Ioannis A. Kakadiaris, Manos Papadakis, Lixin Shen, Donald Kouri, David K. Hoffman
redb/extractors/decompiler/_archive/DecompileGhidra-old.py
← Index redb/extractors/decompiler/_archive/DecompileGhidra-old.py python
from hashlib import sha256
import inspect
from pathlib import Path
import subprocess
import json
import subprocess
import json
import os
import tempfile
import uuid
import shutil
import time

from dotenv import load_dotenv

from redb.extractors.enum import Tag
from redb.models.dataclasses import Decompiled
from redb.extractors.extractor import Extractor


class DecompileGhidra(Extractor):
    def __init__(
        self,
        filepath,
        log,
        index_prefix=None,
        elastic_index=None,
        known_benign=False,
        known_malicious=False,
    ):
        super().__init__(
            filepath, log, index_prefix, elastic_index, known_benign, known_malicious
        )
        self.log.debug(inspect.currentframe().f_code.co_name)
        self.elastic_index = self.index_prefix + "-ghidra"
        self.ghidra_path = "/opt/ghidra"
        self.java_script_path = (
            self.ghidra_path
            + "/Ghidra/Features/Base/ghidra_scripts/GhidraDecompilerScript.java"
        )
        self.decompiled = None
        load_dotenv()
        self.decompiled_folder = os.getenv("DECOMPILED_FOLDER", "/opt/decompiled")
        self.log.debug(f"Decompiled folder: {self.decompiled_folder}")

    def run_command(self, cmd, env=None):
        try:
            self.log.info(f"Starting command: {' '.join(cmd)}")
            start_time = time.time()
            TIMEOUT = 1200  # 20 minutes in seconds
            process = subprocess.Popen(
                cmd, env=env, stdout=subprocess.PIPE, stderr=subprocess.PIPE, text=True
            )

            while True:
                output = process.stdout.readline()
                if output:
                    print(output.strip())
                if process.poll() is not None:
                    break
            try:
                stdout, stderr = process.communicate(timeout=TIMEOUT)
            except subprocess.TimeoutExpired:
                process.kill()
                self.log.error(f"Ghidra timed out after {TIMEOUT} seconds")
                # raise subprocess.TimeoutExpired(process.args, TIMEOUT)
                return None
            end_time = time.time()

            self.log.debug(
                f"Command finished. Execution time: {end_time - start_time:.2f} seconds"
            )
            self.log.debug(f"Return code: {process.returncode}")

            if process.returncode != 0:
                self.log.error(f"Error output:\n{stderr}")
                return None
            return stdout
        except Exception as e:
            self.log.error(f"Error running command {' '.join(cmd)}: {e}")
            return None

    def analyze_binary(self):
        self.log.debug(f"Ghidra path: {self.ghidra_path}")
        self.log.debug(f"Binary path: {self.filepath}")
        self.log.debug(f"Java script path: {self.java_script_path}")

        # Check if Java script exists
        if not os.path.exists(self.java_script_path):
            self.log.error(f"Error: Java script not found at {self.java_script_path}")
            return None

        # Set up environment variables
        env = os.environ.copy()
        java_home = "/usr/lib/jvm/java-17-openjdk-amd64"  # Adjust this path if needed
        env["JAVA_HOME"] = java_home
        env["PATH"] = f"{java_home}/bin:{env['PATH']}"
        env["LD_LIBRARY_PATH"] = f"{java_home}/lib:{env.get('LD_LIBRARY_PATH', '')}"
        env["DECOMPILED_FOLDER"] = self.decompiled_folder

        # Print environment variables for debugging
        self.log.debug(f"JAVA_HOME: {env['JAVA_HOME']}")
        self.log.debug(f"PATH: {env['PATH']}")
        self.log.debug(f"LD_LIBRARY_PATH: {env['LD_LIBRARY_PATH']}")

        # Check Ghidra installation
        analyzeHeadless_path = f"{self.ghidra_path}/support/analyzeHeadless"
        self.log.debug(
            f"analyzeHeadless exists: {os.path.exists(analyzeHeadless_path)}"
        )

        # Create a temporary project directory
        project_path = tempfile.gettempdir() + "/ghidra_" + str(uuid.uuid4())
        os.makedirs(project_path, exist_ok=True)
        self.log.debug(f"Created temporary project path: {project_path}")
        output_file = ""

        try:
            # Run Ghidra's headless analyzer
            analyze_cmd = [
                analyzeHeadless_path,
                project_path,
                "TempProject",
                "-import",
                self.filepath,
                "-postScript",
                self.java_script_path,
                self.sha256,
                "-deleteProject",
            ]

            result = self.run_command(analyze_cmd, env=env)
            if result is None:
                return None

            # Read the output JSON file
            output_file = os.path.join(
                self.decompiled_folder, self.sha256 + "-decompiled.json"
            )
            if os.path.exists(output_file):
                with open(output_file, "r") as f:
                    functions = json.load(f)
                return functions
            else:
                self.log.error(
                    f"Output file {output_file} not found. Ghidra analysis may have failed."
                )
                return None
        finally:
            # Clean up
            if os.path.exists(project_path):
                shutil.rmtree(project_path)
                self.log.debug(f"Deleted temporary project path: {project_path}")

    def extract(self):
        self.log.debug(inspect.currentframe().f_code.co_name)
        try:
            functions = self.analyze_binary()

            if functions:
                self.log.info(f"Extracted functions from {self.filepath}:")
                for func in functions:
                    id = sha256(func["address"].encode()).hexdigest()
                    self.decompiled = Decompiled(
                        _id=id,
                        decompiled_function_name=func["name"],
                        decompiled_function_address=func["address"],
                        decompiled_function=func["decompiled"],
                    )
                    self.export_to_elastic([self.decompiled])
            else:
                self.log.error("No decompiled functions extracted.")
            return True
        except Exception as e:
            self.log.error(f"Error extracting decompiled information: {e}")
            return None

    def tag(self):
        return Tag.DECOMPILED.value