Manja Marz

22 papers C 3Journal 17Unranked 2
YearRankTypeTitle / Venue / Authors
2025 C conf
Go Game Capture and Reconstruction of Missing Moves Using Deep Learning Techniques.
CoG
Roman Gerloff, Manja Marz, Florian Wahl
2023 J jnl
VIRify: An integrated detection, annotation and taxonomic classification pipeline using virus-specific protein profile hidden Markov models.
PLoS Comput. Biol.
Guillermo Rangel-Pineros, Alexandre Almeida, Martin Beracochea, Ekaterina A. Sakharova, Manja Marz, Alejandro Reyes, Martin Hölzer, Robert D. Finn
2021 J jnl
Computational strategies to combat COVID-19: useful tools to accelerate SARS-CoV-2 and coronavirus research.
Briefings Bioinform.
Franziska Hufsky, Kevin Lamkiewicz, Alexandre Almeida, Abdel Aouacheria, Cecilia N. Arighi, Alex Bateman, Jan Baumbach, Niko Beerenwinkel, Christian Brandt, Marco Cacciabue, Sara Chuguransky, Oliver Drechsel, Robert D. Finn, Adrian Fritz, Stephan Fuchs, Georges Hattab, Anne-Christin Hauschild, Dominik Heider, Marie Hoffmann, Martin Hölzer, Stefan Hoops, Lars Kaderali, Ioanna Kalvari, Max von Kleist, Renó Kmiecinski, Denise Kühnert, Gorka Lasso, Pieter Libin, Markus List, Hannah F. Löchel, Maria Jesus Martin, Roman Martin, Julian O. Matschinske, Alice C. McHardy, Pedro Mendes, Jaina Mistry, Vincent Navratil, Eric P. Nawrocki, Áine Niamh O'toole, Nancy Ontiveros-Palacios, Anton I. Petrov, Guillermo Rangel-Pineros, Nicole Redaschi, Susanne Reimering, Knut Reinert, Alejandro Reyes, Lorna J. Richardson, David L. Robertson, Sepideh Sadegh, Joshua B. Singer, Kristof Theys, Chris Upton, Marius Welzel, Lowri Williams, Manja Marz
2021 J jnl
EpiDope: a deep neural network for linear B-cell epitope prediction.
Bioinform.
Maximilian Collatz, Florian Mock, Emanuel Barth, Martin Hölzer, Konrad Sachse, Manja Marz
2021 J jnl
EpiDope: a deep neural network for linear B-cell epitope prediction.
Bioinform.
Maximilian Collatz, Florian Mock, Emanuel Barth, Martin Hölzer, Konrad Sachse, Manja Marz
2021 J jnl
PoSeiDon: a Nextflow pipeline for the detection of evolutionary recombination events and positive selection.
Bioinform.
Martin Hölzer, Manja Marz
2021 J jnl
Rfam 14: expanded coverage of metagenomic, viral and microRNA families.
Nucleic Acids Res.
Ioanna Kalvari, Eric P. Nawrocki, Nancy Ontiveros-Palacios, Joanna Argasinska, Kevin Lamkiewicz, Manja Marz, Sam Griffiths-Jones, Claire Toffano-Nioche, Daniel Gautheret, Zasha Weinberg, Elena Rivas, Sean R. Eddy, Robert D. Finn, Alex Bateman, Anton I. Petrov
2021 J jnl
VIDHOP, viral host prediction with deep learning.
Bioinform.
Florian Mock, Adrian Viehweger, Emanuel Barth, Manja Marz
2020 J jnl
Tissue-specific Gene Expression Changes Are Associated with Aging in Mice.
Genom. Proteom. Bioinform.
Akash Srivastava, Emanuel Barth, Maria A. Ermolaeva, Madlen Guenther, Christiane Frahm, Manja Marz, Otto W. Witte
2019 J jnl
Global importance of RNA secondary structures in protein-coding sequences.
Bioinform.
Markus Fricke, Ruman Gerst, Bashar Ibrahim, Michael Niepmann, Manja Marz
2016 J jnl
Prediction of conserved long-range RNA-RNA interactions in full viral genomes.
Bioinform.
Markus Fricke, Manja Marz
2014 J jnl
Challenges in RNA virus bioinformatics.
Bioinform.
Manja Marz, Niko Beerenwinkel, Christian Drosten, Markus Fricke, Dmitrij Frishman, Ivo L. Hofacker, Dieter Hoffmann, Martin Middendorf, Thomas Rattei, Peter F. Stadler, Armin Töpfer
2014 C conf
Explorative Analysis of Heterogeneous, Unstructured, and Uncertain Data - A Computer Science Perspective on Biodiversity Research.
DATA
Clemens Beckstein, Sebastian Böcker, Martin Bogdan, Helge Bruelheide, H. Martin Bücker, Joachim Denzler, Peter Dittrich, Ivo Grosse, Alexander Hinneburg, Birgitta König-Ries, Felicitas Löffler, Manja Marz, Matthias Müller-Hannemann, Martin Winter, Wolf Zimmermann
2014 J jnl
Graph-distance distribution of the Boltzmann ensemble of RNA secondary structures.
Algorithms Mol. Biol.
Jing Qin, Markus Fricke, Manja Marz, Peter F. Stadler, Rolf Backofen
2013 C conf
Distribution of Graph-Distances in Boltzmann Ensembles of RNA Secondary Structures.
WABI
Rolf Backofen, Markus Fricke, Manja Marz, Jing Qin, Peter F. Stadler
2013 — conf
POMAGO: Multiple Genome-Wide Alignment Tool for Bacteria.
ISBRA
Nicolas Wieseke, Marcus Lechner, Marcus Ludwig, Manja Marz
2013 J jnl
The correlation of genome size and DNA methylation rate in metazoans.
Theory Biosci.
Marcus Lechner, Manja Marz, Christian Ihling, Andrea Sinz, Peter F. Stadler, Veiko Krauss
2011 J jnl
Proteinortho: Detection of (Co-)Orthologs in Large-Scale Analysis.
BMC Bioinform.
Marcus Lechner, Sven Findeiß, Lydia Steiner, Manja Marz, Peter F. Stadler, Sonja J. Prohaska
2011 J jnl
RNA-RNA interaction prediction based on multiple sequence alignments.
Bioinform.
Andrew X. Li, Manja Marz, Jing Qin, Christian M. Reidys
2010 J jnl
Temperature-Dependent Structural Variability of RNAs: spliced Leader RNAs and their Evolutionary History.
J. Bioinform. Comput. Biol.
Manja Marz, Nathalie Vanzo, Peter F. Stadler
2009 — conf
Converting DNA to Music: ComposAlign.
GCB
Todd Ingalls, Georg Martius, Manja Marz, Sonja J. Proshaka, Marc Hellmuth
2007 J jnl
U7 snRNAs: A Computational Survey.
Genom. Proteom. Bioinform.
Manja Marz, Axel Mosig, Bärbel M. R. Stadler, Peter F. Stadler