Mallur S. Madhusudhan

13 papers Journal 13
YearRankTypeTitle / Venue / Authors
2020 J jnl
A knowledge-based scoring function to assess quaternary associations of proteins.
Bioinform.
Abhilesh S. Dhawanjewar, Ankit A. Roy, Mallur S. Madhusudhan
2013 J jnl
Depth: a web server to compute depth, cavity sizes, detect potential small-molecule ligand-binding cavities and predict the pK
Nucleic Acids Res.
Kuan Pern Tan, Thanh Binh Nguyen, Siddharth Patel, Raghavan Varadarajan, Mallur S. Madhusudhan
2012 J jnl
SALIGN: a web server for alignment of multiple protein sequences and structures.
Bioinform.
Hannes Braberg, Benjamin M. Webb, Elina Tjioe, Ursula Pieper, Andrej Sali, Mallur S. Madhusudhan
2011 J jnl
CLICK - topology-independent comparison of biomolecular 3D structures.
Nucleic Acids Res.
M. N. Nguyen, Kuan Pern Tan, Mallur S. Madhusudhan
2011 J jnl
DEPTH: a web server to compute depth and predict small-molecule binding cavities in proteins.
Nucleic Acids Res.
Kuan Pern Tan, Raghavan Varadarajan, Mallur S. Madhusudhan
2011 J jnl
ModBase, a database of annotated comparative protein structure models, and associated resources.
Nucleic Acids Res.
Ursula Pieper, Benjamin M. Webb, David T. Barkan, Dina Schneidman-Duhovny, Avner Schlessinger, Hannes Braberg, Zheng Yang, Elaine C. Meng, Eric F. Pettersen, Conrad C. Huang, Ruchira S. Datta, Parthasarathy Sampathkumar, Mallur S. Madhusudhan, Kimmen Sjölander, Thomas E. Ferrin, Stephen K. Burley, Andrej Sali
2007 J jnl
DBAli tools: mining the protein structure space.
Nucleic Acids Res.
Marc A. Martí-Renom, Ursula Pieper, Mallur S. Madhusudhan, Andrea Rossi, Narayanan Eswar, Fred P. Davis, Fátima Al-Shahrour, Joaquín Dopazo, Andrej Sali
2007 J jnl
Stereochemical Criteria for Prediction of the Effects of Proline Mutations on Protein Stability.
PLoS Comput. Biol.
Kanika Bajaj, Mallur S. Madhusudhan, Bharat V. Adkar, Purbani Chakrabarti, C. Ramakrishnan, Andrej Sali, Raghavan Varadarajan
2006 J jnl
MODBASE: a database of annotated comparative protein structure models and associated resources.
Nucleic Acids Res.
Ursula Pieper, Narayanan Eswar, Fred P. Davis, Hannes Braberg, Mallur S. Madhusudhan, Andrea Rossi, Marc A. Martí-Renom, Rachel Karchin, Ben M. Webb, David Eramian, Min-Yi Shen, Libusha Kelly, Francisco Melo, Andrej Sali
2004 J jnl
MODBASE, a database of annotated comparative protein structure models, and associated resources.
Nucleic Acids Res.
Ursula Pieper, Narayanan Eswar, Hannes Braberg, Mallur S. Madhusudhan, Fred P. Davis, Ashley C. Stuart, Nebojsa Mirkovic, Andrea Rossi, Marc A. Martí-Renom, András Fiser, Ben M. Webb, Daniel M. Greenblatt, Conrad C. Huang, Thomas E. Ferrin, Andrej Sali
2003 J jnl
EVA: evaluation of protein structure prediction servers.
Nucleic Acids Res.
Ingrid Y. Y. Koh, Volker A. Eyrich, Marc A. Martí-Renom, Dariusz Przybylski, Mallur S. Madhusudhan, Narayanan Eswar, Osvaldo Graña, Florencio Pazos, Alfonso Valencia, Andrej Sali, Burkhard Rost
2003 J jnl
Tools for comparative protein structure modeling and analysis.
Nucleic Acids Res.
Narayanan Eswar, Bino John, Nebojsa Mirkovic, András Fiser, Valentin A. Ilyin, Ursula Pieper, Ashley C. Stuart, Marc A. Martí-Renom, Mallur S. Madhusudhan, Bozidar Yerkovich, Andrej Sali
2001 J jnl
EVA: continuous automatic evaluation of protein structure prediction servers.
Bioinform.
Volker A. Eyrich, Marc A. Martí-Renom, Dariusz Przybylski, Mallur S. Madhusudhan, András Fiser, Florencio Pazos, Alfonso Valencia, Andrej Sali, Burkhard Rost