Malika Smaïl-Tabbone

65 papers A 2B 2C 2Misc 2Journal 25Unranked 31

Year	Rank	Type	Title / Venue / Authors
2025	—	`conf`	Identification automatique de marqueurs postaux dans des documents anciens de cartes postales. EGC Anis Amri, Malika Smaïl-Tabbone, Salvatore Tabbone
2024	B	`conf`	DKGR: A Distributed Framework for Geometric Knowledge Graph Embedding with Ray. KES Mohammed Khatbane, Md. Kamrul Islam, Sabeur Aridhi, Malika Smaïl-Tabbone
2024	J	`jnl`	HIPPO: HIstogram-based Pseudo-POtential for scoring protein-ssRNA fragment-based docking poses. BMC Bioinform. Anna Kravchenko, Sjoerd Jacob de Vries, Malika Smaïl-Tabbone, Isaure Chauvot de Beauchêne
2022	J	`jnl`	From quantitative SBML models to Boolean networks. Appl. Netw. Sci. Athénaïs Vaginay, Taha Boukhobza, Malika Smaïl-Tabbone
2022	J	`jnl`	Inductive database to support iterative data mining: Application to biomarker analysis on patient data in the Fight-HF project. J. Biomed. Informatics Emmanuel Bresso, Joao-Pedro Ferreira, Nicolas Girerd, Masatake Kobayashi, Grégoire Preud'homme, Patrick Rossignol, Fayez Zannad, Marie-Dominique Devignes, Malika Smaïl-Tabbone
2022	J	`jnl`	Negative sampling and rule mining for explainable link prediction in knowledge graphs. Knowl. Based Syst. Md. Kamrul Islam, Sabeur Aridhi, Malika Smaïl-Tabbone
2022	J	`jnl`	On the design of a similarity function for sparse binary data with application on protein function annotation. Knowl. Based Syst. Marcelo B. A. Veras, Bishnu Sarker, Sabeur Aridhi, João P. P. Gomes, José A. F. de Macêdo, Engelbert Mephu Nguifo, Marie-Dominique Devignes, Malika Smaïl-Tabbone
2021	—	`conf`	Automatic Synthesis of Boolean Networks from Biological Knowledge and Data. OLA Athénaïs Vaginay, Taha Boukhobza, Malika Smaïl-Tabbone
2021	—	`conf`	From Quantitative SBML Models to Boolean Networks. COMPLEX NETWORKS Athénaïs Vaginay, Taha Boukhobza, Malika Smaïl-Tabbone
2021	J	`jnl`	Investigating ADR mechanisms with Explainable AI: a feasibility study with knowledge graph mining. BMC Medical Informatics Decis. Mak. Emmanuel Bresso, Pierre Monnin, Cédric Bousquet, François-Élie Calvier, Ndeye Coumba Ndiaye, Nadine Petitpain, Malika Smaïl-Tabbone, Adrien Coulet
2021	—	`conf`	Simple Negative Sampling for Link Prediction in Knowledge Graphs. COMPLEX NETWORKS Md. Kamrul Islam, Sabeur Aridhi, Malika Smaïl-Tabbone
2020	J	`jnl`	A comparative study of similarity-based and GNN-based link prediction approaches. CoRR Md. Kamrul Islam, Sabeur Aridhi, Malika Smaïl-Tabbone
2020	B	`conf`	Computing Vertex-Vertex Dissimilarities Using Random Trees: Application to Clustering in Graphs. IDA Kevin Dalleau, Miguel Couceiro, Malika Smaïl-Tabbone
2020	J	`jnl`	Investigating ADR mechanisms with knowledge graph mining and explainable AI. CoRR Emmanuel Bresso, Pierre Monnin, Cédric Bousquet, François-Élie Calvier, Ndeye Coumba Ndiaye, Nadine Petitpain, Malika Smaïl-Tabbone, Adrien Coulet
2020	—	`conf`	Tackling scalability issues in mining path patterns from knowledge graphs: a preliminary study. ALGOS Pierre Monnin, Emmanuel Bresso, Miguel Couceiro, Malika Smaïl-Tabbone, Amedeo Napoli, Adrien Coulet
2020	J	`jnl`	Tackling scalability issues in mining path patterns from knowledge graphs: a preliminary study. CoRR Pierre Monnin, Emmanuel Bresso, Miguel Couceiro, Malika Smaïl-Tabbone, Amedeo Napoli, Adrien Coulet
2020	J	`jnl`	Unsupervised extra trees: a stochastic approach to compute similarities in heterogeneous data. Int. J. Data Sci. Anal. Kevin Dalleau, Miguel Couceiro, Malika Smaïl-Tabbone
2019	—	`conf`	Les forêts d'arbres extrêmement aléatoires : utilisation dans un cadre non supervisé. EGC Kevin Dalleau, Miguel Couceiro, Malika Smaïl-Tabbone
2018	—	`conf`	Cooperation of bio-ontologies for the classification of genetic intellectual disabilities : a diseasome approach. SWAT4LS Gabin Personeni, Marie-Dominique Devignes, Malika Smaïl-Tabbone, Philippe Jonveaux, Céline Bonnet, Adrien Coulet
2018	—	`conf`	Exploration et analyses multi-objectifs de séries temporelles de données météorologiques. EGC Yelen Per, Kevin Dalleau, Malika Smaïl-Tabbone
2018	—	`conf`	Unsupervised Extremely Randomized Trees. PAKDD (3) Kevin Dalleau, Miguel Couceiro, Malika Smaïl-Tabbone
2017	J	`jnl`	Discovering associations between adverse drug events using pattern structures and ontologies. J. Biomed. Semant. Gabin Personeni, Emmanuel Bresso, Marie-Dominique Devignes, Michel Dumontier, Malika Smaïl-Tabbone, Adrien Coulet
2017	J	`jnl`	Neighborhood-Based Label Propagation in Large Protein Graphs. CoRR Sabeur Aridhi, Seyed Ziaeddin Alborzi, Malika Smaïl-Tabbone, Marie-Dominique Devignes, David W. Ritchie
2017	—	`conf`	Prédiction de défauts dans les arbres du parc végétal Grenoblois et préconisations pour les futures plantations. EGC Yelen Per, Kevin Dalleau, Malika Smaïl-Tabbone
2016	J	`jnl`	Kbdock - Searching and Organising the Structural Space of Protein-Protein Interactions. ERCIM News Marie-Dominique Devignes, Malika Smaïl-Tabbone, David W. Ritchie
2016	J	`jnl`	Mining Electronic Health Records to Validate Knowledge in Pharmacogenomics. ERCIM News Adrien Coulet, Malika Smaïl-Tabbone
2014	—	`book`	Contributions à l'extraction de connaissances à partir de données biologiques. (Contribution to knowledge extraction from biological data). Malika Smaïl-Tabbone
2014	J	`jnl`	KBDOCK 2013: a spatial classification of 3D protein domain family interactions. Nucleic Acids Res. Anisah W. Ghoorah, Marie-Dominique Devignes, Malika Smaïl-Tabbone, David W. Ritchie
2014	—	`conf`	Mining Linked Open Data: A Case Study with Genes Responsible for Intellectual Disability. DILS Gabin Personeni, Simon Daget, Céline Bonnet, Philippe Jonveaux, Marie-Dominique Devignes, Malika Smaïl-Tabbone, Adrien Coulet
2013	—	`conf`	Clustering optimal de gènes fondé sur une mesure de similarité sémantique. CORIA Rachid Hafiane, Malika Smaïl-Tabbone, Marie-Dominique Devignes, Salvatore Tabbone
2013	J	`jnl`	Integrative relational Machine-Learning Approach for Understanding Drug Side-Effect Profiles. BMC Bioinform. Emmanuel Bresso, Renaud Grisoni, Gino Marchetti, Arnaud Sinan Karaboga, Michel Souchet, Marie-Dominique Devignes, Malika Smaïl-Tabbone
2013	—	`conf`	Lattice Based Data Access (LBDA): An Approach for Organizing and Accessing Linked Open Data in Biology. DMoLD Mehwish Alam, Melisachew Wudage Chekol, Adrien Coulet, Amedeo Napoli, Malika Smaïl-Tabbone
2012	—	`conf`	Formal Concept Analysis Applied to Transcriptomic Data. CLA Mehwish Alam, Adrien Coulet, Amedeo Napoli, Malika Smaïl-Tabbone
2012	—	`conf`	Formal Concept Analysis Applied to Transcriptomic Data. FCA4AI@ECAI Mehwish Alam, Adrien Coulet, Amedeo Napoli, Malika Smaïl-Tabbone
2012	—	`conf`	Formal Concept Analysis for the Interpretation of Relational Learning Applied on 3D Protein-binding Sites. KDIR Emmanuel Bresso, Renaud Grisoni, Marie-Dominique Devignes, Amedeo Napoli, Malika Smaïl-Tabbone
2012	J	`jnl`	Functional classification of genes using semantic distance and fuzzy clustering approach: evaluation with reference sets and overlap analysis. Int. J. Comput. Biol. Drug Des. Marie-Dominique Devignes, Sidahmed Benabderrahmane, Malika Smaïl-Tabbone, Amedeo Napoli, Olivier Poch
2012	C	`conf`	ILP Characterization of 3D Protein-Binding Sites and FCA-Based Interpretation. IC3K Emmanuel Bresso, Renaud Grisoni, Marie-Dominique Devignes, Amedeo Napoli, Malika Smaïl-Tabbone
2011	—	`conf`	Ontology-based functional classification of genes: Evaluation with reference sets and overlap analysis. BIBM Workshops Sidahmed Benabderrahmane, Marie-Dominique Devignes, Malika Smaïl-Tabbone, Amedeo Napoli, Olivier Poch
2011	J	`jnl`	Spatial clustering of protein binding sites for template based protein docking. Bioinform. Anisah W. Ghoorah, Marie-Dominique Devignes, Malika Smaïl-Tabbone, David W. Ritchie
2011	—	`conf`	Use of Domain Knowledge for Dimension Reduction - Application to Mining of Drug Side Effects. KDIR Emmanuel Bresso, Sidahmed Benabderrahmane, Malika Smaïl-Tabbone, Gino Marchetti, Arnaud Sinan Karaboga, Michel Souchet, Amedeo Napoli, Marie-Dominique Devignes
2010	J	`jnl`	BioRegistry: Automatic extraction of metadata for biological database retrieval and discovery. Int. J. Metadata Semant. Ontologies Marie-Dominique Devignes, Philippe Franiatte, Nizar Messai, Emmanuel Bresso, Amedeo Napoli, Malika Smaïl-Tabbone
2010	J	`jnl`	Comparison of Three Preprocessing Filters Efficiency in Virtual Screening: Identification of New Putative LXRβ Regulators As a Test Case. J. Chem. Inf. Model. Leo Ghemtio, Marie-Dominique Devignes, Malika Smaïl-Tabbone, Michel Souchet, Vincent Leroux, Bernard Maigret
2010	—	`conf`	Connaissances de domaine et treillis de concepts pour l'exploration progressive de données complexes. IC Nizar Messai, Marie-Dominique Devignes, Amedeo Napoli, Malika Smaïl-Tabbone
2010	J	`jnl`	IntelliGO: a new vector-based semantic similarity measure including annotation origin. BMC Bioinform. Sidahmed Benabderrahmane, Malika Smaïl-Tabbone, Olivier Poch, Amedeo Napoli, Marie-Dominique Devignes
2010	A	`conf`	Using Domain Knowledge to Guide Lattice-based Complex Data Exploration. ECAI Nizar Messai, Marie-Dominique Devignes, Amedeo Napoli, Malika Smaïl-Tabbone
2009	—	`conf`	A KDD Approach for Designing Filtering Strategies to Improve Virtual Screening. KDIR Leo Ghemtio, Malika Smaïl-Tabbone, Marie-Dominique Devignes, Michel Souchet, Bernard Maigret
2009	—	`conf`	Analyse de données transcriptomiques: Modélisation floue de profils d'expression différentielle et analyse fonctionnelle. INFORSID Sidahmed Benabderrahmane, Marie-Dominique Devignes, Malika Smaïl-Tabbone, Amedeo Napoli, Olivier Poch, Ngoc-Hoan Nguyen, Wolfgang Raffelsberger
2009	J	`jnl`	Gene-disease relationship discovery based on model-driven data integration and database view definition. Bioinform. Saliha Yilmaz, Philippe Jonveaux, Cedric Bicep, Laurent Pierron, Malika Smaïl-Tabbone, Marie-Dominique Devignes
2008	C	`conf`	BioRegistry: automatic extraction of metadata for biological database retrieval and discovery. iiWAS Marie-Dominique Devignes, Philippe Franiatte, Nizar Messai, Amedeo Napoli, Malika Smaïl-Tabbone
2008	Misc	`conf`	Extending Attribute Dependencies for Lattice-Based Querying and Navigation. ICCS Nizar Messai, Marie-Dominique Devignes, Amedeo Napoli, Malika Smaïl-Tabbone
2008	A	`conf`	Many-Valued Concept Lattices for Conceptual Clustering and Information Retrieval. ECAI Nizar Messai, Marie-Dominique Devignes, Amedeo Napoli, Malika Smaïl-Tabbone
2008	—	`conf`	Ontology Refinement through Role Assertion Analysis: Example in Pharmacogenomics. Description Logics Adrien Coulet, Malika Smaïl-Tabbone, Amedeo Napoli, Marie-Dominique Devignes
2008	J	`jnl`	Ontology-guided data preparation for discovering genotype-phenotype relationships. BMC Bioinform. Adrien Coulet, Malika Smaïl-Tabbone, Pascale Benlian, Amedeo Napoli, Marie-Dominique Devignes
2008	—	`conf`	Role Assertion Analysis: a proposed method for ontology refinement through assertion learning. STAIRS Adrien Coulet, Malika Smaïl-Tabbone, Amedeo Napoli, Marie-Dominique Devignes
2007	—	`conf`	Traitement d'attributs inter-dépendants pour la recherche d'information par treillis. Actes d'IC Nizar Messai, Marie-Dominique Devignes, Amedeo Napoli, Malika Smaïl-Tabbone
2007	—	`conf`	Workshop PC Chairs' Message. WISE Workshops Marie-Dominique Devignes, Malika Smaïl-Tabbone
2006	—	`conf`	SNP-Converter: An Ontology-Based Solution to Reconcile Heterogeneous SNP Descriptions for Pharmacogenomic Studies. DILS Adrien Coulet, Malika Smaïl-Tabbone, Pascale Benlian, Amedeo Napoli, Marie-Dominique Devignes
2006	—	`conf`	Suggested Ontology for Pharmacogenomics (SO-Pharm): Modular Construction and Preliminary Testing. OTM Workshops (1) Adrien Coulet, Malika Smaïl-Tabbone, Amedeo Napoli, Marie-Dominique Devignes
2006	J	`jnl`	Treillis de concepts et ontologies pour interroger l'annuaire de sources de données biologiques BioRegistry. Ingénierie des Systèmes d Inf. Nizar Messai, Marie-Dominique Devignes, Amedeo Napoli, Malika Smaïl-Tabbone
2005	—	`conf`	BioRegistry: A Structured Metadata Repository for Bioinformatic Databases. CompLife Malika Smaïl-Tabbone, Shazia Osman, Nizar Messai, Amedeo Napoli, Marie-Dominique Devignes
2005	—	`conf`	Méthode sémantique pour la classification et l'iinterrogation de sources de données biologiques. EGC (Ateliers) Nizar Messai, Marie-Dominique Devignes, Amedeo Napoli, Malika Smaïl-Tabbone
2005	Misc	`conf`	Querying a Bioinformatic Data Sources Registry with Concept Lattices. ICCS Nizar Messai, Marie-Dominique Devignes, Amedeo Napoli, Malika Smaïl-Tabbone
2005	J	`jnl`	Treillis de concepts et ontologies pour l'interrogation d'un annuaire de sources de données biologiques (BioRegistry) CoRR Nizar Messai, Marie-Dominique Devignes, Malika Smaïl-Tabbone, Amedeo Napoli
2005	—	`conf`	Treillis de concepts et ontologies pour l'interrogation d'un annuaire de sources de données biologiques (BioRegistry). INFORSID Nizar Messai, Marie-Dominique Devignes, Amedeo Napoli, Malika Smaïl-Tabbone
1995	—	`conf`	Modèle flexible pour la recherche interactive de documents multimédias. INFORSID Brigitte Simonnot, Malika Smaïl-Tabbone