Malik Yousef

62 papers A* 1Journal 33Unranked 25
YearRankTypeTitle / Venue / Authors
2026 — conf
AMP-zGSM: A z-Scoring Enhanced Grouping-Scoring-Modeling Framework for Antimicrobial Peptide Prediction.
BIOSTEC (2)
Demet Parlak Sönmez, Burcu Bakir-Gungor, Malik Yousef
2025 J jnl
A machine learning approach to differentiate stage IV from stage I colorectal cancer.
Comput. Biol. Medicine
Naim Abu-Freha, Zaid Afawi, Miar Yousef, Walid Alamor, Noor Sanalla, Simon Esbit, Malik Yousef
2025 — conf
Enhancing the Efficiency of the Grouping-Scoring-Modeling Framework with Statistical Pre-Scoring Component for Transcriptomic Data Analysis.
BIOSTEC (1)
Maham Khokhar, Burcu Bakir-Gungor, Malik Yousef
2025 — conf
Identifying Inflammatory Bowel Disease-Associated Gene Ontology Groups Using Biological Knowledge-Based Machine Learning.
BIOSTEC (1)
Nur Sebnem Ersoz, Burcu Bakir-Gungor, Malik Yousef
2025 — conf
PathDisGene: Discovering Informative Gene Groups for Disease Diagnosis Using Pathway-Disease Associations and a Grouping, Scoring, Modeling-Based Machine Learning Approach.
BIOSTEC (1)
Emma Qumsiyeh, Burcu Bakir-Gungor, Malik Yousef
2025 J jnl
Prediction of colorectal cancer based on taxonomic levels of microorganisms and discovery of taxonomic biomarkers using the Grouping-Scoring-Modeling (G-S-M) approach.
Comput. Biol. Medicine
Burcu Bakir-Gungor, Mustafa Temiz, Beyza Canakcimaksutoglu, Malik Yousef
2025 — ed.
Proceedings of the 18th International Joint Conference on Biomedical Engineering Systems and Technologies, BIOSTEC 2025 - Volume 1, Porto, Portugal, February 20-22, 2025.
BIOSTEC (1)
Jungsil Kim, Raquel C. Conceição, Malik Yousef, Arnav Bhavsar, Sylvia Pelayo, Ana Fred, Hugo Gamboa
2025 — ed.
Proceedings of the 18th International Joint Conference on Biomedical Engineering Systems and Technologies, BIOSTEC 2025 - Volume 2: HEALTHINF, Porto, Portugal, February 20-22, 2025.
BIOSTEC (2): HEALTHINF
Jungsil Kim, Raquel C. Conceição, Malik Yousef, Arnav Bhavsar, Sylvia Pelayo, Ana Fred, Hugo Gamboa
2025 J jnl
RCE-IFE: recursive cluster elimination with intra-cluster feature elimination.
PeerJ Comput. Sci.
Cihan Kuzudisli, Burcu Bakir-Gungor, Bahjat Qaqish, Malik Yousef
2024 J jnl
CCPred: Global and population-specific colorectal cancer prediction and metagenomic biomarker identification at different molecular levels using machine learning techniques.
Comput. Biol. Medicine
Burcu Bakir-Gungor, Mustafa Temiz, Yasin Inal, Emre Cicekyurt, Malik Yousef
2024 — conf
Classification of Breast Cancer Molecular Subtypes with Grouping-Scoring-Modeling Approach that Incorporates Disease-Disease Association Information.
SIU
Emma Qumsiyeh, Burcu Bakir-Gungor, Malik Yousef
2024 — conf
Metagenomic Data Analysis with Machine Learning to Discover Colorectal Cancer-Associated Enzymes.
SIU
Nur Sebnem Ersoz, Cihan Kuzudisli, Malik Yousef, Burcu Bakir-Gungor
2024 J jnl
Novel Antimicrobial Peptide Design Using Motif Match Score Representation.
IEEE ACM Trans. Comput. Biol. Bioinform.
Ümmü Gülsüm Söylemez, Malik Yousef, Zülal Kesmen, Burcu Bakir-Gungor
2024 — conf
Prediction of Type 2 Diabetes using Metagenomic Data and Identification of Taxonomic Biomarkers.
SIU
Mustafa Temiz, Cihan Kuzudisli, Malik Yousef, Burcu Bakir-Gungor
2024 — ed.
Proceedings of the 17th International Joint Conference on Biomedical Engineering Systems and Technologies, BIOSTEC 2024, Volume 1, Rome, Italy, February 21-23, 2024.
BIOSTEC (1)
Maria Pedro Guarino, Kazuhiro Hotta, Malik Yousef, Hui Liu, Giovanni Saggio, Ana Fred, Hugo Gamboa
2024 — conf
ReScore Disease Groups Based on Multiple Machine Learnings Utilizing the Grouping-Scoring-Modeling Approach.
BIOSTEC (1)
Emma Qumsiyeh, Miar Yousef, Malik Yousef
2024 — conf
SEMANT - Feature Group Selection Utilizing FastText-Based Semantic Word Grouping, Scoring, and Modeling Approach for Text Classification.
DEXA (2)
Daniel Voskergian, Burcu Bakir-Gungor, Malik Yousef
2024 — conf
TextNetTopics-SFTS-SBTS: TextNetTopics Scoring Approaches Based Sequential Forward and Backward.
IWBBIO (2)
Daniel Voskergian, Burcu Bakir-Gungor, Malik Yousef
2023 — conf
Detecting Semantic Similarity of Diseases based Machine Learning.
BIBM
Emma Qumsiyeh, Malik Yousef, Zaidoun Salah, Rashid Jayousi
2023 — conf
GediNETPro: Discovering Patterns of Disease Groups.
BIOINFORMATICS
Emma Qumsiyeh, Miray Unlu Yazici, Malik Yousef
2023 — conf
Prediction of Antimicrobial Peptides Using Deep Neural Networks.
BIOINFORMATICS
Ümmü Gülsüm Söylemez, Malik Yousef, Burcu Bakir-Gungor
2023 J jnl
PriPath: identifying dysregulated pathways from differential gene expression via grouping, scoring, and modeling with an embedded feature selection approach.
BMC Bioinform.
Malik Yousef, Fatma Ozdemir, Amhar Jaber, Jens Allmer, Burcu Bakir-Gungor
2023 — conf
miRcorrNetPro: Unraveling Algorithmic Insights through Cross-Validation in Multi-Omics Integration for Comprehensive Data Analysis.
BIBM
Miray Unlu Yazici, Malik Yousef, J. S. Marron, Burcu Bakir-Gungor
2021 J jnl
Application of Biological Domain Knowledge Based Feature Selection on Gene Expression Data.
Entropy
Malik Yousef, Abhishek Kumar, Burcu Bakir-Gungor
2021 J jnl
COVIDium: a COVID-19 resource compendium.
Database J. Biol. Databases Curation
Rohit Satyam, Malik Yousef, Sahar Qazi, Adil Manzoor Bhat, Khalid Raza
2021 J jnl
Classification of Precursor MicroRNAs from Different Species Based on K-mer Distance Features.
Algorithms
Malik Yousef, Jens Allmer
2021 J jnl
Clinical presentation of COVID-19 - a model derived by a machine learning algorithm.
J. Integr. Bioinform.
Malik Yousef, Louise C. Showe, Izhar Ben Shlomo
2021 J jnl
CogNet: classification of gene expression data based on ranked active-subnetwork-oriented KEGG pathway enrichment analysis.
PeerJ Comput. Sci.
Malik Yousef, Ege Ülgen, Osman Ugur Sezerman
2021 — conf
Integrating Gene Ontology Based Grouping and Ranking into the Machine Learning Algorithm for Gene Expression Data Analysis.
DEXA Workshops
Malik Yousef, Ahmet Sayici, Burcu Bakir-Gungor
2021 J jnl
MultiKOC: Multi-One-Class Classifier Based K-Means Clustering.
Algorithms
Loai AbedAllah, Murad Badarna, Waleed Khalifa, Malik Yousef
2021 — conf
SVM-RCE-R-OPT: Optimization of Scoring Function for SVM-RCE-R.
DEXA Workshops
Malik Yousef, Amhar Jabeer, Burcu Bakir-Gungor
2021 J jnl
Super-rapid race for saving lives by developing COVID-19 vaccines.
J. Integr. Bioinform.
Anusha Uttarilli, Sridhar Amalakanti, Phaneeswara-Rao Kommoju, Srihari Sharma, Pankaj Goyal, Gowrang Kasaba Manjunath, Vineet Upadhayay, Alisha Parveen, Ravi Tandon, Kumar Suranjit Prasad, Tikam Chand Dakal, Izhar Ben Shlomo, Malik Yousef, Muniasamy Neerathilingam, Abhishek Kumar
2021 J jnl
TopicsRanksDC: Distance-based Topic Ranking applied on Two-Class Data.
CoRR
Malik Yousef, Jamal Al Qundus, Silvio Peikert, Adrian Paschke
2020 — conf
A Machine Learning-based Approach for the Categorization of MicroRNAs to Their Species of Origin.
BIOINFORMATICS
Luise Odenthal, Jens Allmer, Malik Yousef
2020 J jnl
Exploring the impact of short-text complexity and structure on its quality in social media.
J. Enterp. Inf. Manag.
Jamal Al Qundus, Adrian Paschke, Shivam Gupta, Ahmad M. Alzouby, Malik Yousef
2020 J jnl
GrpClassifierEC: a novel classification approach based on the ensemble clustering space.
Algorithms Mol. Biol.
Loai AbedAllah, Malik Yousef
2020 J jnl
Recursive Cluster Elimination based Rank Function (SVM-RCE-R) implemented in KNIME.
F1000Research
Malik Yousef, Burcu Bakir-Gungor, Amhar Jabeer, Gokhan Goy, Rehman Qureshi, Louise C. Showe
2020 — conf
TopicsRanksDC: Distance-Based Topic Ranking Applied on Two-Class Data.
DEXA Workshops
Malik Yousef, Jamal Al Qundus, Silvio Peikert, Adrian Paschke
2019 — conf
Classification of Pre-cursor microRNAs from Different Species Using a New Set of Features.
DEXA Workshops
Malik Yousef, Jens Allmer
2019 — conf
In Silico Validation of ncRNA-ncRNA Interaction Sites with ncRNAs Represented by k-mers Features.
BIOINFORMATICS
Malik Yousef, Walid Khaleifa, Tugba Onal Suzek
2019 — conf
K - Means Based One-Class SVM Classifier.
DEXA Workshops
Loai AbedAllah, Murad Badarna, Waleed Khalifa, Malik Yousef
2019 J jnl
maTE: discovering expressed interactions between microRNAs and their targets.
Bioinform.
Malik Yousef, Loai AbdAllah, Jens Allmer
2018 — conf
Ensemble Clustering Based Dimensional Reduction.
DEXA Workshops
Loai AbedAllah, Malik Yousef
2018 — conf
Species Categorization via MicroRNAs - Based on 3'UTR Target Sites using Sequence Features.
BIOINFORMATICS
Malik Yousef, Dalit Levy, Jens Allmer
2017 J jnl
Categorization of species based on their microRNAs employing sequence motifs, information-theoretic sequence feature extraction, and
EURASIP J. Adv. Signal Process.
Malik Yousef, Dawit Nigatu, Dalit Levy, Jens Allmer, Werner Henkel
2017 — conf
Distinguishing between MicroRNA Targets from Diverse Species using Sequence Motifs and K-mers.
BIOINFORMATICS
Malik Yousef, Waleed Khalifa, Ilhan Erkin Acar, Jens Allmer
2017 J jnl
MicroRNA categorization using sequence motifs and k-mers.
BMC Bioinform.
Malik Yousef, Waleed Khalifa, Ilhan Erkin Acar, Jens Allmer
2017 J jnl
Sequence-based information-theoretic features for gene essentiality prediction.
BMC Bioinform.
Dawit Nigatu, Patrick Sobetzko, Malik Yousef, Werner Henkel
2016 J jnl
Editorial: Computational miRNomics.
J. Integr. Bioinform.
Jens Allmer, Malik Yousef
2016 J jnl
Ensemble Clustering Classification compete SVM and One-Class classifiers applied on plant microRNAs Data.
J. Integr. Bioinform.
Malik Yousef, Waleed Khalifa, Loai AbdAllah
2016 J jnl
Feature Selection Has a Large Impact on One-Class Classification Accuracy for MicroRNAs in Plants.
Adv. Bioinformatics
Malik Yousef, Muserref Duygu Saçar, Waleed Khalifa, Jens Allmer
2016 — conf
Feature Selection for MicroRNA Target Prediction - Comparison of One-Class Feature Selection Methodologies.
BIOINFORMATICS
Malik Yousef, Jens Allmer, Waleed Khalifa
2009 J jnl
Classification and biomarker identification using gene network modules and support vector machines.
BMC Bioinform.
Malik Yousef, Mohamed Ketany, Larry M. Manevitz, Louise C. Showe, Michael K. Showe
2008 J jnl
Learning from positive examples when the negative class is undetermined- microRNA gene identification.
Algorithms Mol. Biol.
Malik Yousef, Segun Jung, Louise C. Showe, Michael K. Showe
2007 J jnl
Naïve Bayes for microRNA target predictions - machine learning for microRNA targets.
Bioinform.
Malik Yousef, Segun Jung, Andrew V. Kossenkov, Louise C. Showe, Michael K. Showe
2007 J jnl
One-class document classification via Neural Networks.
Neurocomputing
Larry M. Manevitz, Malik Yousef
2007 J jnl
Recursive Cluster Elimination (RCE) for classification and feature selection from gene expression data.
BMC Bioinform.
Malik Yousef, Segun Jung, Louise C. Showe, Michael K. Showe
2007 J jnl
VISDA: an open-source caBIG
Bioinform.
Jiajing Wang, Huai Li, Yitan Zhu, Malik Yousef, Michael Nebozhyn, Michael M. Showe, Louise C. Showe, Jianhua Xuan, Robert Clarke, Yue Joseph Wang
2006 J jnl
Combining multi-species genomic data for microRNA identification using a Naïve Bayes classifier.
Bioinform.
Malik Yousef, Michael Nebozhyn, Hagit Shatkay, Stathis Kanterakis, Louise C. Showe, Michael K. Showe
2004 J jnl
A web navigation system based on a neural network user-model trained with only positive web documents.
Web Intell. Agent Syst.
Larry M. Manevitz, Malik Yousef
2001 J jnl
One-Class SVMs for Document Classification.
J. Mach. Learn. Res.
Larry M. Manevitz, Malik Yousef
2000 A* conf
Document classification on neural networks using only positive examples.
SIGIR
Larry M. Manevitz, Malik Yousef