Makoto Tsubokura

27 papers Journal 18Unranked 9
YearRankTypeTitle / Venue / Authors
2026 conf
SCA/HPC Asia
Peter Ohm, Ayato Takii, Kazuto Ando, Rahul Bale, Makoto Tsubokura
2026 J jnl
Future Gener. Comput. Syst.
Mario Rüttgers, Moritz Waldmann, Fabian Hübenthal, Klaus Vogt, Makoto Tsubokura, Sangseung Lee, Andreas Lintermann
2025 J jnl
IEEE Access
Hang Fu, Qingyu Wang, Takuji Nakashima, Asahi Kawasaki, Chenguang Lai, Keigo Shimizu, Rahul Bale, Makoto Tsubokura
2025 conf
ICCS (Workshops 5)
Ayato Takii, Naoki Kabuo, Masashi Yamakawa, Yusei Kobayashi, Shinichi Asao, Seiichi Takeuchi, Makoto Tsubokura
2025 J jnl
Comput. Aided Des.
Yuji Wada, Tokimasa Shimada, Koji Nishiguchi, Shigenobu Okazawa, Makoto Tsubokura
2024 J jnl
Future Gener. Comput. Syst.
Rishabh Puri, Junya Onishi, Mario Rüttgers, Rakesh Sarma, Makoto Tsubokura, Andreas Lintermann
2024 conf
PPAM (3)
Mario Rüttgers, Fabian Hübenthal, Makoto Tsubokura, Andreas Lintermann
2024 J jnl
Future Gener. Comput. Syst.
Aito Higashida, Kazuto Ando, Mario Rüttgers, Andreas Lintermann, Makoto Tsubokura
2024 conf
ICCS (7)
Ayato Takii, Tatsuya Miyoshi, Masashi Yamakawa, Yusei Kobayashi, Shinichi Asao, Seiichi Takeuchi, Makoto Tsubokura
2023 J jnl
PLoS Comput. Biol.
Alicia Murga, Rahul Bale, Chung-Gang Li, Kazuhide Ito, Makoto Tsubokura
2023 conf
ICCS (1)
Ayato Takii, Ritsuka Gomi, Masashi Yamakawa, Makoto Tsubokura
2022 J jnl
Int. J. High Perform. Comput. Appl.
Kazuto Ando, Rahul Bale, Chung-Gang Li, Satoshi Matsuoka, Keiji Onishi, Makoto Tsubokura
2021 J jnl
CoRR
Rahul Bale, Amneet Pal Singh Bhalla, Boyce E. Griffith, Makoto Tsubokura
2021 J jnl
J. Comput. Phys.
Rahul Bale, Amneet Pal Singh Bhalla, Boyce E. Griffith, Makoto Tsubokura
2021 J jnl
CoRR
Kazuto Ando, Rahul Bale, Chung-Gang Li, Satoshi Matsuoka, Keiji Onishi, Makoto Tsubokura
2021 conf
ISC Workshops
Kazuto Ando, Keiji Onishi, Rahul Bale, Makoto Tsubokura, Akiyoshi Kuroda, Kazuo Minami
2021 conf
PASC
Rahul Bale, Chung-Gang Li, Masashi Yamakawa, Akiyoshi Iida, Ryoichi Kurose, Makoto Tsubokura
2020 conf
PASC
Rahul Bale, Wei Hsiang Wang, Chung-Gang Li, Keiji Onishi, Kenji Uchida, Hidefumi Fujimoto, Ryoichi Kurose, Makoto Tsubokura
2020 J jnl
CoRR
Keiji Onishi, Makoto Tsubokura
2019 J jnl
Int. J. High Perform. Comput. Appl.
Niclas Jansson, Rahul Bale, Keiji Onishi, Makoto Tsubokura
2018 J jnl
CoRR
Niclas Jansson, Rahul Bale, Keiji Onishi, Makoto Tsubokura
2017 J jnl
J. Comput. Phys.
Chung-Gang Li, Makoto Tsubokura
2016 conf
JHPCS
Niclas Jansson, Rahul Bale, Keiji Onishi, Makoto Tsubokura
2012 J jnl
J. Vis.
Masaya Muto, Makoto Tsubokura, Nobuyuki Oshima
2008 J jnl
J. Vis.
Toshio Kobayashi, Makoto Tsubokura, Nobuyuki Oshima
2008 J jnl
J. Vis.
Toshio Kobayashi, Makoto Tsubokura, Masamichi Oishi
2007 J jnl
J. Vis.
Toshio Kobayashi, Makoto Tsubokura
Dockerfile
← Index Dockerfile dockerfile
FROM python:3.12-slim

# Prevent interactive prompts during package installation
ENV DEBIAN_FRONTEND=noninteractive

# Install system dependencies (build tools will be removed after pip install).
# curl + ca-certificates + gnupg are needed to add the NodeSource repository
# for the JS analysis toolchain (webcrack + @nodesecure/js-x-ray).
RUN apt-get update && apt-get install -y \
    git \
    gcc \
    g++ \
    build-essential \
    libmagic1 \
    file \
    libqt5core5a \
    libqt5gui5 \
    libqt5widgets5 \
    default-jre-headless \
    curl \
    ca-certificates \
    gnupg \
    && rm -rf /var/lib/apt/lists/*

# Install Node.js 22 LTS (needed by webcrack and @nodesecure/js-x-ray). Pinning
# to 22.x because that's the active LTS — bumping to a future major is a
# deliberate Dockerfile change, not a silent upgrade on rebuild.
RUN curl -fsSL https://deb.nodesource.com/setup_22.x | bash - && \
    apt-get install -y nodejs && \
    rm -rf /var/lib/apt/lists/*

# webcrack is the deobfuscator (CLI on PATH). Pinned to 2.16.0 — released
# 2026-04-25, last verified working with our subprocess invocation. Bumping
# this is a deliberate change so a future regression in webcrack does not
# show up as a silent JSDeobfuscation behaviour shift on image rebuild.
RUN npm install -g webcrack@2.16.0

# Create application directory
WORKDIR /app

# Copy requirements and install Python dependencies
COPY requirements.txt .
RUN pip3 install --no-cache-dir -r requirements.txt

# Remove build dependencies to reduce image size. curl + gnupg are kept —
# curl is widely useful and gnupg is small. Node.js stays.
RUN apt-get remove -y gcc g++ build-essential git && \
    apt-get autoremove -y && \
    apt-get clean && \
    rm -rf /var/lib/apt/lists/*

# Copy application code (explicit files to help debug .dockerignore issues)
COPY redb/ ./redb/
COPY start.py .
COPY scripts/ ./scripts/

# Install @nodesecure/js-x-ray locally next to its bundled Node bridge so the
# Python wrapper's `node_modules/@nodesecure/js-x-ray` existence check passes
# without any runtime configuration. Version is pinned in the package.json.
# The npm install also triggers the `postinstall: patch-package` hook which
# re-applies the local patch in scripts/patches/ — currently a one-line fix
# for a `from "repl"` → `from "module"` import in [email protected] that breaks
# on Node 22 patches above ~22.10. Drop the patch when js-x-ray ships a fix.
RUN cd /app/redb/extractors/js_extractors/scripts && npm install --omit=dev

# Set up logging path and create logs directory
ENV LOG_FILE_PATH="/app/logs/"
RUN mkdir -p /app/logs

# Environment variables for tools (snapshot-style paths)
ENV CAPA_PATH="/usr/bin/capa"
ENV DIE_PATH="/usr/bin/nfdc"
ENV GORESYM_PATH="/usr/bin/GoReSym"
ENV JADX_PATH="/opt/deploy/jadx/bin/jadx"
ENV APKTOOL_PATH="/usr/local/bin/apktool"
ENV MALCONTENT_PATH="/usr/local/bin/mal"
ENV PATH="/usr/bin:/opt/binaryninja:${PATH}"
ENV PYTHONPATH="/opt/binaryninja/python"

# Tool timeouts
ENV CAPA_TIMEOUT="300"
ENV DIE_TIMEOUT="180"
ENV MALCONTENT_TIMEOUT="300"
ENV JADX_TIMEOUT="600"
ENV BINJA_TIMEOUT="1200"
ENV DECOMPILE_EXTRACTOR_TIMEOUT="2580"

ENV MALCONTENT_FORMATS=pebin,elf,macho,apk,javascript

# JS analysis toolchain. webcrack is on PATH from the global npm install;
# js-x-ray's Python wrapper finds the bundled Node bridge at the default
# location (no env needed). Override these in .env / Nomad if you swap tools.
ENV JS_DEOBFUSCATOR_PATH="webcrack"
ENV JS_DEOBFUSCATE_TIMEOUT="60"
ENV JS_XRAY_TIMEOUT="60"

# Copy the Binary Ninja setup script
COPY scripts/setup-and-run.sh /usr/local/bin/setup-and-run.sh
RUN chmod +x /usr/local/bin/setup-and-run.sh

# Create non-root user for security
RUN useradd -m -u 1000 analyzer
RUN chown -R analyzer:analyzer /app /app/logs
USER analyzer

# Set entrypoint to setup script for Binary Ninja installation (runtime)
ENTRYPOINT ["/usr/local/bin/setup-and-run.sh"]

# Set working directory
WORKDIR /app

# Default command - supports both feature extraction and decompilation
CMD ["python3", "start.py", "--nomad-job"]