Makoto Taiji - RankMe

31 papers A 7C 1Journal 12Unranked 10

Year	Rank	Type	Title / Venue / Authors
2024	—	`conf`	Raising Compute Density of Molecular Dynamics Simulation Through Approximate Memoization. ASAP Salim Khemira, Xinyuan Wang, Anh Nguyen, Yutaka Tamiya, Makoto Taiji, Takahide Yoshikawa, Jason Helge Anderson
2022	J	`jnl`	AdamB: Decoupled Bayes by Backprop With Gaussian Scale Mixture Prior. IEEE Access Keigo Nishida, Makoto Taiji
2021	A	`conf`	Hardware acceleration of tensor-structured multilevel ewald summation method on MDGRAPE-4A, a special-purpose computer system for molecular dynamics simulations. SC Gentaro Morimoto, Yohei M. Koyama, Hao Zhang, Teruhisa S. Komatsu, Yousuke Ohno, Keigo Nishida, Itta Ohmura, Hiroshi Koyama, Makoto Taiji
2020	C	`conf`	Implementing a Comprehensive Networks-on-Chip Generator with Optimal Configurations. CLUSTER Hao Zhang, Itta Ohmura, Makoto Taiji
2015	J	`jnl`	Assessment and acceleration of binding energy calculations for protein-ligand complexes by the fragment molecular orbital method. J. Comput. Chem. Takao Otsuka, Noriaki Okimoto, Makoto Taiji
2014	J	`jnl`	A new set of atomic radii for accurate estimation of solvation free energy by Poisson-Boltzmann solvent model. J. Comput. Chem. Junya Yamagishi, Noriaki Okimoto, Gentaro Morimoto, Makoto Taiji
2014	J	`jnl`	Petascale molecular dynamics simulation using the fast multipole method on K computer. Comput. Phys. Commun. Yousuke Ohno, Rio Yokota, Hiroshi Koyama, Gentaro Morimoto, Aki Hasegawa, Gen Masumoto, Noriaki Okimoto, Yoshinori Hirano, Huda Ibeid, Tetsu Narumi, Makoto Taiji
2011	J	`jnl`	Fast Calculation of Electrostatic Potentials on the GPU or the ASIC MD-GRAPE-3. Comput. J. Tetsu Narumi, Kenji Yasuoka, Makoto Taiji, Francesco Zerbetto, Siegfried Höfinger
2009	A	`conf`	42 TFlops hierarchical SC Tsuyoshi Hamada, Tetsu Narumi, Rio Yokota, Kenji Yasuoka, Keigo Nitadori, Makoto Taiji
2009	—	`conf`	A Comparative Study on ASIC, FPGAs, GPUs and General Purpose Processors in the O(N^2) Gravitational N-body Simulation. AHS Tsuyoshi Hamada, Khaled Benkrid, Keigo Nitadori, Makoto Taiji
2009	J	`jnl`	A novel multiple-walk parallel algorithm for the Barnes-Hut treecode on GPUs - towards cost effective, high performance N-body simulation. Comput. Sci. Res. Dev. Tsuyoshi Hamada, Keigo Nitadori, Khaled Benkrid, Yousuke Ohno, Gentaro Morimoto, Tomonari Masada, Yuichiro Shibata, Kiyoshi Oguri, Makoto Taiji
2009	J	`jnl`	Application of MDGRAPE-3, a special purpose board for molecular dynamics simulations, to periodic biomolecular systems. J. Comput. Chem. Gota Kikugawa, Rossen Apostolov, Narutoshi Kamiya, Makoto Taiji, Ryutaro Himeno, Haruki Nakamura, Yasushige Yonezawa
2009	J	`jnl`	Current performance gains from utilizing the GPU or the ASIC MDGRAPE-3 within an enhanced Poisson Boltzmann approach. J. Comput. Chem. Tetsu Narumi, Kenji Yasuoka, Makoto Taiji, Siegfried Höfinger
2009	J	`jnl`	High-Performance Drug Discovery: Computational Screening by Combining Docking and Molecular Dynamics Simulations. PLoS Comput. Biol. Noriaki Okimoto, Noriyuki Futatsugi, Hideyoshi Fuji, Atsushi Suenaga, Gentaro Morimoto, Ryoko Yanai, Yousuke Ohno, Tetsu Narumi, Makoto Taiji
2008	J	`jnl`	Accelerating Molecular Dynamics Simulations on PlayStation 3 Platform Using Virtual-GRAPE Programming Model. SIAM J. Sci. Comput. Tetsu Narumi, Shun Kameoka, Makoto Taiji, Kenji Yasuoka
2008	—	`conf`	Circuit and physical design of the MDGRAPE-4 on-chip network links. SLIP Duraid Madina, Makoto Taiji
2007	A	`conf`	A 281 Tflops calculation for X-ray protein structure analysis with special-purpose computers MDGRAPE-3. SC Yousuke Ohno, Eiji Nishibori, Tetsu Narumi, Takahiro Koishi, Tahir H. Tahirov, Hideo Ago, Masashi Miyano, Ryutaro Himeno, Toshikazu Ebisuzaki, Makoto Sakata, Makoto Taiji
2007	—	`conf`	Dynamical Singularities in Online Learning of Recurrent Neural Networks. FOCI Asaki Saito, Makoto Taiji, Takashi Ikegami
2006	A	`conf`	Gordon Bell finalists II - A 55 TFLOPS simulation of amyloid-forming peptides from yeast prion Sup35 with the special-purpose computer system MDGRAPE-3. SC Tetsu Narumi, Yousuke Ohno, Noriaki Okimoto, Takahiro Koishi, Atsushi Suenaga, Noriyuki Futatsugi, Ryoko Yanai, Ryutaro Himeno, Shigenori Fujikawa, Makoto Taiji, Mitsuru Ikei
2004	J	`jnl`	PetaFLOPS computing. Commun. ACM Toshikazu Ebisuzaki, Robert S. Germain, Makoto Taiji
2003	—	`conf`	MDGRAPE-3: A Petaflops Special-Purpose Computer System for Molecular Dynamics Simulations. PARCO Makoto Taiji, Tetsu Narumi, Yousuke Ohno, Akihiko Konagaya
2003	A	`conf`	Protein Explorer: A Petaflops Special-Purpose Computer System for Molecular Dynamics Simulations. SC Makoto Taiji, Tetsu Narumi, Yousuke Ohno, Noriyuki Futatsugi, Atsushi Suenaga, Naoki Takada, Akihiko Konagaya
2000	—	`conf`	On the Power of Nonlinear Mappings in Switching Map Systems. UMC Yuzuru Sato, Makoto Taiji, Takashi Ikegami
1999	—	`conf`	Imitation and Cooperation in Coupled Dynamical Recognizers. ECAL Takashi Ikegami, Makoto Taiji
1998	—	`book`	Scientific simulations with special purpose computers - the GRAPE systems. Junichiro Makino, Makoto Taiji
1997	J	`jnl`	Fast and accurate molecular dynamics simulation of a protein using a special-purpose computer. J. Comput. Chem. Yuto Komeiji, Masami Uebayasi, Ryo Takata, Akihiro Shimizu, Keiji Itsukashi, Makoto Taiji
1995	A	`conf`	Astrophysical N-body simulations on the GRAPE-4 Special-Purpose Computer. SC Junichiro Makino, Makoto Taiji
1995	—	`conf`	GRAPE-4: A Special-Purpose Computer for Gravitational N-Body Problems. PP Junichiro Makino, Makoto Taiji, Toshikazu Ebisuzaki, Daiichiro Sugimoto
1994	—	`conf`	GRAPE-4: A Teraflops Massively Parallel Special-Purpose Computer System for Astrophysical itN-body Simulations. IPPS Makoto Taiji, Junichiro Makino, Toshikazu Ebisuzaki, Daiichiro Sugimoto
1994	A	`conf`	GRAPE-4: a one-Tflops special-purpose computer for astrophysical SC Junichiro Makino, Makoto Taiji, Toshikazu Ebisuzaki, Daiichiro Sugimoto
1994	—	`conf`	HARP-1: A Special-Purpose Computer for itN-body Simulation with the Hermite Integrator. HICSS (1) Eiichiro Kokubo, Junichiro Makino, Makoto Taiji