Magnus Rattray

61 papers A* 1A 2C 2Journal 43Unranked 10
YearRankTypeTitle / Venue / Authors
2026 J jnl
Bioinform.
Emine Beyza Çandir, Halil Ibrahim Kuru, Magnus Rattray, A. Ercüment Çiçek, Öznur Tastan
2025 J jnl
Trans. Mach. Learn. Res.
Xiaoyu Jiang, Sokratia Georgaka, Magnus Rattray, Mauricio A. Álvarez
2024 J jnl
PLoS Comput. Biol.
Cécile Le Sueur, Magnus Rattray, Mikhail Savitski
2024 J jnl
CoRR
Xiaoyu Jiang, Sokratia Georgaka, Magnus Rattray, Mauricio A. Álvarez
2023 J jnl
Trans. Mach. Learn. Res.
Elvijs Sarkans, Sumon Ahmed, Magnus Rattray, Alexis Boukouvalas
2023 J jnl
Bioinform.
Haoting Zhang, Carl Henrik Ek, Magnus Rattray, Marta Milo
2022 J jnl
Bioinform.
Jonathan R. Bowles, Caroline Hoppe, Hilary L. Ashe, Magnus Rattray
2021 J jnl
Bioinform.
Nuha Bintayyash, Sokratia Georgaka, S. T. John, Sumon Ahmed, Alexis Boukouvalas, James Hensman, Magnus Rattray
2020 J jnl
Bioinform.
Chenfu Shi, Magnus Rattray, Gisela Orozco
2020 J jnl
BMC Bioinform.
Luisa Cutillo, Alexis Boukouvalas, Elli Marinopoulou, Nancy Papalopulu, Magnus Rattray
2019 J jnl
Bioinform.
Sumon Ahmed, Magnus Rattray, Alexis Boukouvalas
2018 J jnl
Stat. Comput.
Maria Myrto Folia, Magnus Rattray
2017 J jnl
R J.
Panagiotis Papastamoulis, Magnus Rattray
2017 J jnl
Bioinform.
Zhenwen Dai, Mudassar Iqbal, Neil D. Lawrence, Magnus Rattray
2016 J jnl
PeerJ Comput. Sci.
Nicolas Durrande, James Hensman, Magnus Rattray, Neil D. Lawrence
2016 J jnl
PeerJ Prepr.
Nicolas Durrande, James Hensman, Magnus Rattray, Neil D. Lawrence
2016 J jnl
Bioinform.
Jing Yang, Christopher A. Penfold, Murray R. Grant, Magnus Rattray
2015 J jnl
IEEE Trans. Pattern Anal. Mach. Intell.
James Hensman, Magnus Rattray, Neil D. Lawrence
2015 J jnl
Bioinform.
James Hensman, Panagiotis Papastamoulis, Peter Glaus, Antti Honkela, Magnus Rattray
2014 J jnl
CoRR
James Hensman, Magnus Rattray, Neil D. Lawrence
2014 J jnl
PLoS Comput. Biol.
Ciira Wa Maina, Antti Honkela, Filomena Matarese, Korbinian Grote, Hendrik G. Stunnenberg, George Reid, Neil D. Lawrence, Magnus Rattray
2013 J jnl
BMC Bioinform.
James Hensman, Neil D. Lawrence, Magnus Rattray
2013 J jnl
BMC Bioinform.
Xuejun Liu, Zhenzhu Gao, Li Zhang, Magnus Rattray
2012 J jnl
CoRR
James Hensman, Magnus Rattray, Neil D. Lawrence
2012 conf
NIPS
James Hensman, Magnus Rattray, Neil D. Lawrence
2012 J jnl
Bioinform.
Peter Glaus, Antti Honkela, Magnus Rattray
2012 J jnl
BMC Syst. Biol.
Michalis K. Titsias, Antti Honkela, Neil D. Lawrence, Magnus Rattray
2011 J jnl
Bioinform.
Antti Honkela, Pei Gao, Jonatan Ropponen, Magnus Rattray, Neil D. Lawrence
2010 ch.
Learning and Inference in Computational Systems Biology
Neil D. Lawrence, Magnus Rattray
2010 A conf
AISTATS
Kevin Sharp, Magnus Rattray
2010 ch.
Learning and Inference in Computational Systems Biology
Neil D. Lawrence, Magnus Rattray, Pei Gao, Michalis K. Titsias
2010 book
Neil D. Lawrence, Mark A. Girolami, Magnus Rattray, Guido Sanguinetti
2010 J jnl
Proc. Natl. Acad. Sci. USA
Antti Honkela, Charles Girardot, Eleanor Hilary Gustafson, Ya-Hsin Liu, Eileen E. M. Furlong, Neil D. Lawrence, Magnus Rattray
2010 J jnl
Bioinform.
Hafiz Muhammad Shahzad Asif, Matthew D. Rolfe, Jeffrey Green, Neil D. Lawrence, Magnus Rattray, Guido Sanguinetti
2009 J jnl
BMC Bioinform.
Richard D. Pearson, Xuejun Liu, Guido Sanguinetti, Marta Milo, Neil D. Lawrence, Magnus Rattray
2008 J jnl
Bioinform.
Bayu Jayawardhana, Douglas B. Kell, Magnus Rattray
2008 conf
NIPS
Michalis K. Titsias, Neil D. Lawrence, Magnus Rattray
2008 C conf
ECCB
Pei Gao, Antti Honkela, Magnus Rattray, Neil D. Lawrence
2007 J jnl
J. Integr. Bioinform.
Intikhab Alam, Mike Cornell, Darren M. Soanes, Cornelia Hedeler, Han Min Wong, Magnus Rattray, Simon J. Hubbard, Nicholas J. Talbot, Stephen G. Oliver, Norman W. Paton
2007 conf
NIPS
Gwenn Englebienne, Timothy F. Cootes, Magnus Rattray
2007 J jnl
BMC Bioinform.
Xuejun Liu, Kevin K. Lin, Bogi Andersen, Magnus Rattray
2006 J jnl
Bioinform.
Guido Sanguinetti, Magnus Rattray, Neil D. Lawrence
2006 conf
CMSB
Guido Sanguinetti, Magnus Rattray, Neil D. Lawrence
2006 conf
NIPS
Neil D. Lawrence, Guido Sanguinetti, Magnus Rattray
2006 J jnl
Bioinform.
Guido Sanguinetti, Neil D. Lawrence, Magnus Rattray
2006 J jnl
Bioinform.
Xuejun Liu, Marta Milo, Neil D. Lawrence, Magnus Rattray
2006 J jnl
Briefings Bioinform.
Magnus Rattray, Xuejun Liu, Guido Sanguinetti, Marta Milo, Neil D. Lawrence
2005 J jnl
Bioinform.
Xuejun Liu, Marta Milo, Neil D. Lawrence, Magnus Rattray
2005 J jnl
Bioinform.
Guido Sanguinetti, Marta Milo, Magnus Rattray, Neil D. Lawrence
2004 A* conf
COLT
David C. Hoyle, Magnus Rattray
2003 conf
NIPS
David C. Hoyle, Magnus Rattray
2003 J jnl
J. Mach. Learn. Res.
Gleb Basalyga, Magnus Rattray
2002 C conf
ICANN
Gleb Basalyga, Magnus Rattray
2002 J jnl
Bioinform.
David C. Hoyle, Magnus Rattray, Ray Jupp, Andy Brass
2002 J jnl
Neural Comput.
Magnus Rattray
2001 conf
NIPS
Magnus Rattray, Gleb Basalyga
2000 conf
IJCNN (4)
Magnus Rattray
1997 conf
NIPS
Magnus Rattray, David Saad
1996 A conf
FOGA
Magnus Rattray, Jonathan Shapiro
1995 J jnl
Complex Syst.
Magnus Rattray
1994 conf
Evolutionary Computing, AISB Workshop
Jonathan Shapiro, Adam Prügel-Bennett, Magnus Rattray
redb/ext/spoof_check.py
← Index redb/ext/spoof_check.py python
import copy
import struct
from enum import Enum

"""
Checks that the metadata within a file's Rich header does not contradict the
other metadata contained within it.

References:
    https://gist.github.com/skochinsky/07c8e95e33d9429d81a75622b5d24c8b
    https://www.sec.in.tum.de/i20/publications/finding-the-needle-a-study-of-
    the-pe32-rich-header-and-respective-malware-triage
"""

KNOWN_PRODUCT_IDS = {
    0: "Unknown",
    1: "Import0",
    2: "Linker510",
    3: "Cvtomf510",
    4: "Linker600",
    5: "Cvtomf600",
    6: "Cvtres500",
    7: "Utc11_Basic",
    8: "Utc11_C",
    9: "Utc12_Basic",
    10: "Utc12_C",
    11: "Utc12_CPP",
    12: "AliasObj60",
    13: "VisualBasic60",
    14: "Masm613",
    15: "Masm710",
    16: "Linker511",
    17: "Cvtomf511",
    18: "Masm614",
    19: "Linker512",
    20: "Cvtomf512",
    21: "Utc12_C_Std",
    22: "Utc12_CPP_Std",
    23: "Utc12_C_Book",
    24: "Utc12_CPP_Book",
    25: "Implib700",
    26: "Cvtomf700",
    27: "Utc13_Basic",
    28: "Utc13_C",
    29: "Utc13_CPP",
    30: "Linker610",
    31: "Cvtomf610",
    32: "Linker601",
    33: "Cvtomf601",
    34: "Utc12_1_Basic",
    35: "Utc12_1_C",
    36: "Utc12_1_CPP",
    37: "Linker620",
    38: "Cvtomf620",
    39: "AliasObj70",
    40: "Linker621",
    41: "Cvtomf621",
    42: "Masm615",
    43: "Utc13_LTCG_C",
    44: "Utc13_LTCG_CPP",
    45: "Masm620",
    46: "ILAsm100",
    47: "Utc12_2_Basic",
    48: "Utc12_2_C",
    49: "Utc12_2_CPP",
    50: "Utc12_2_C_Std",
    51: "Utc12_2_CPP_Std",
    52: "Utc12_2_C_Book",
    53: "Utc12_2_CPP_Book",
    54: "Implib622",
    55: "Cvtomf622",
    56: "Cvtres501",
    57: "Utc13_C_Std",
    58: "Utc13_CPP_Std",
    59: "Cvtpgd1300",
    60: "Linker622",
    61: "Linker700",
    62: "Export622",
    63: "Export700",
    64: "Masm700",
    65: "Utc13_POGO_I_C",
    66: "Utc13_POGO_I_CPP",
    67: "Utc13_POGO_O_C",
    68: "Utc13_POGO_O_CPP",
    69: "Cvtres700",
    70: "Cvtres710p",
    71: "Linker710p",
    72: "Cvtomf710p",
    73: "Export710p",
    74: "Implib710p",
    75: "Masm710p",
    76: "Utc1310p_C",
    77: "Utc1310p_CPP",
    78: "Utc1310p_C_Std",
    79: "Utc1310p_CPP_Std",
    80: "Utc1310p_LTCG_C",
    81: "Utc1310p_LTCG_CPP",
    82: "Utc1310p_POGO_I_C",
    83: "Utc1310p_POGO_I_CPP",
    84: "Utc1310p_POGO_O_C",
    85: "Utc1310p_POGO_O_CPP",
    86: "Linker624",
    87: "Cvtomf624",
    88: "Export624",
    89: "Implib624",
    90: "Linker710",
    91: "Cvtomf710",
    92: "Export710",
    93: "Implib710",
    94: "Cvtres710",
    95: "Utc1310_C",
    96: "Utc1310_CPP",
    97: "Utc1310_C_Std",
    98: "Utc1310_CPP_Std",
    99: "Utc1310_LTCG_C",
    100: "Utc1310_LTCG_CPP",
    101: "Utc1310_POGO_I_C",
    102: "Utc1310_POGO_I_CPP",
    103: "Utc1310_POGO_O_C",
    104: "Utc1310_POGO_O_CPP",
    105: "AliasObj710",
    106: "AliasObj710p",
    107: "Cvtpgd1310",
    108: "Cvtpgd1310p",
    109: "Utc1400_C",
    110: "Utc1400_CPP",
    111: "Utc1400_C_Std",
    112: "Utc1400_CPP_Std",
    113: "Utc1400_LTCG_C",
    114: "Utc1400_LTCG_CPP",
    115: "Utc1400_POGO_I_C",
    116: "Utc1400_POGO_I_CPP",
    117: "Utc1400_POGO_O_C",
    118: "Utc1400_POGO_O_CPP",
    119: "Cvtpgd1400",
    120: "Linker800",
    121: "Cvtomf800",
    122: "Export800",
    123: "Implib800",
    124: "Cvtres800",
    125: "Masm800",
    126: "AliasObj800",
    127: "PhoenixPrerelease",
    128: "Utc1400_CVTCIL_C",
    129: "Utc1400_CVTCIL_CPP",
    130: "Utc1400_LTCG_MSIL",
    131: "Utc1500_C",
    132: "Utc1500_CPP",
    133: "Utc1500_C_Std",
    134: "Utc1500_CPP_Std",
    135: "Utc1500_CVTCIL_C",
    136: "Utc1500_CVTCIL_CPP",
    137: "Utc1500_LTCG_C",
    138: "Utc1500_LTCG_CPP",
    139: "Utc1500_LTCG_MSIL",
    140: "Utc1500_POGO_I_C",
    141: "Utc1500_POGO_I_CPP",
    142: "Utc1500_POGO_O_C",
    143: "Utc1500_POGO_O_CPP",
    144: "Cvtpgd1500",
    145: "Linker900",
    146: "Export900",
    147: "Implib900",
    148: "Cvtres900",
    149: "Masm900",
    150: "AliasObj900",
    151: "Resource900",
    152: "AliasObj1000",
    154: "Cvtres1000",
    155: "Export1000",
    156: "Implib1000",
    157: "Linker1000",
    158: "Masm1000",
    170: "Utc1600_C",
    171: "Utc1600_CPP",
    172: "Utc1600_CVTCIL_C",
    173: "Utc1600_CVTCIL_CPP",
    174: "Utc1600_LTCG_C ",
    175: "Utc1600_LTCG_CPP",
    176: "Utc1600_LTCG_MSIL",
    177: "Utc1600_POGO_I_C",
    178: "Utc1600_POGO_I_CPP",
    179: "Utc1600_POGO_O_C",
    180: "Utc1600_POGO_O_CPP",
    183: "Linker1010",
    184: "Export1010",
    185: "Implib1010",
    186: "Cvtres1010",
    187: "Masm1010",
    188: "AliasObj1010",
    199: "AliasObj1100",
    201: "Cvtres1100",
    202: "Export1100",
    203: "Implib1100",
    204: "Linker1100",
    205: "Masm1100",
    206: "Utc1700_C",
    207: "Utc1700_CPP",
    208: "Utc1700_CVTCIL_C",
    209: "Utc1700_CVTCIL_CPP",
    210: "Utc1700_LTCG_C ",
    211: "Utc1700_LTCG_CPP",
    212: "Utc1700_LTCG_MSIL",
    213: "Utc1700_POGO_I_C",
    214: "Utc1700_POGO_I_CPP",
    215: "Utc1700_POGO_O_C",
    216: "Utc1700_POGO_O_CPP",
    219: "Cvtres1200",
    220: "Export1200",
    221: "Implib1200",
    222: "Linker1200",
    223: "Masm1200",
    # Speculation
    224: "AliasObj1200",
    237: "Cvtres1210",
    238: "Export1210",
    239: "Implib1210",
    240: "Linker1210",
    241: "Masm1210",
    # Speculation
    242: "Utc1810_C",
    243: "Utc1810_CPP",
    244: "Utc1810_CVTCIL_C",
    245: "Utc1810_CVTCIL_CPP",
    246: "Utc1810_LTCG_C ",
    247: "Utc1810_LTCG_CPP",
    248: "Utc1810_LTCG_MSIL",
    249: "Utc1810_POGO_I_C",
    250: "Utc1810_POGO_I_CPP",
    251: "Utc1810_POGO_O_C",
    252: "Utc1810_POGO_O_CPP",
    255: "Cvtres1400",
    256: "Export1400",
    257: "Implib1400",
    258: "Linker1400",
    259: "Masm1400",
    260: "Utc1900_C",
    261: "Utc1900_CPP",
    # Speculation
    262: "Utc1900_CVTCIL_C",
    263: "Utc1900_CVTCIL_CPP",
    264: "Utc1900_LTCG_C ",
    265: "Utc1900_LTCG_CPP",
    266: "Utc1900_LTCG_MSIL",
    267: "Utc1900_POGO_I_C",
    268: "Utc1900_POGO_I_CPP",
    269: "Utc1900_POGO_O_C",
    270: "Utc1900_POGO_O_CPP",
}


class Result(Enum):
    VALID = 0
    INVALID = 1
    UNABLE_TO_PARSE = 2


def _rol(val, num):
    """Rotates val to the left by num bits."""
    return ((val << (num % 32)) & 0xFFFFFFFF) | (val >> (32 - (num % 32)))


def checksum_test(pe, rich_header):
    """Tests that the Rich header checksum is valid.

    Computes what the Rich header checksum should be. If the Rich header
    contains a different checksum value, this function returns INVALID
    This indicates that either the Rich header or MS-DOS stub has been modified

    The Rich header checksum is computed from the following:
        Length of the MS-DOS stub
        Contents of the MS-DOS stub, with e_lfanew zeroed out
        Rich header @Comp.IDs and lowest 5 bits of each count
    """
    if rich_header is None:
        rich_header = {}
    # Checksum stored in Rich header
    rich_checksum = rich_header.get("checksum", None)

    # Get DOS header data
    if pe.DOS_HEADER.e_lfanew > len(pe.__data__):
        return Result.UNABLE_TO_PARSE
    data = pe.__data__[: pe.DOS_HEADER.e_lfanew]

    # Get start marker
    mask = 0x536E6144  # DanS (little-endian)
    start_marker = struct.pack(
        "<LLLL", rich_checksum ^ mask, rich_checksum, rich_checksum, rich_checksum
    )
    if not len(start_marker):
        return Result.UNABLE_TO_PARSE

    # Get index of start marker
    start_index = data.find(start_marker)
    if start_index == -1:
        return Result.UNABLE_TO_PARSE

    # Get list of @Comp.IDs and counts from Rich header
    # Elements in rich_fields at even indices are @Comp.IDs
    # Elements in rich_fields at odd indices are counts
    rich_fields = copy.deepcopy(rich_header.get("values", None))
    if len(rich_fields) % 2 != 0:
        return Result.UNABLE_TO_PARSE

    # Compute cd as MS-DOS stub portion of checksum
    # Zero out e_lfanew from 0x3c to 0x3f
    cd = 0
    for i in range(start_index):
        if i >= 0x3C and i <= 0x3F:
            cd += _rol(0, i)
        else:
            cd += _rol(data[i], i)

    # Compute cd as Rich header portion of checksum
    cr = 0
    while len(rich_fields):
        compid = rich_fields.pop(0)
        count = rich_fields.pop(0)
        cr += _rol(compid, count & 0x1F)

    # Compute checksum from MS-DOS stub start index, cd, cr
    # Only keep lowest 32 bits
    checksum = (start_index + cd + cr) & 0xFFFFFFFF

    # Compare computed checksum with the checksum in the Rich header
    if checksum != rich_checksum:
        return Result.INVALID
    else:
        return Result.VALID


def duplicate_test(pe, rich_header):
    """Checks for duplicate @Comp.IDs in the Rich header.

    If the Rich header contains duplicate entries, returns INVALID
    This indicates that the Rich header has been modified
    """
    if rich_header is None:
        rich_header = {}

    # Get list of @Comp.IDs and counts from Rich header
    # Elements in rich_fields at even indices are @Comp.IDs
    # Elements in rich_fields at odd indices are counts
    rich_fields = copy.deepcopy(rich_header.get("values", None))
    if len(rich_fields) % 2 != 0:
        return Result.UNABLE_TO_PARSE

    # Get a list of @Comp.IDs in rich_fields
    compids = []
    for i in range(len(rich_fields)):
        if i % 2 == 0:
            compids.append(rich_fields[i])

    # Check if any @Comp.IDs are duplicates
    if len(compids) != len(set(compids)):
        return Result.INVALID

    return Result.VALID


def linker_test(pe, rich_header):
    """Checks that the Rich and PE header linker versions do not conflict.

    Certain Rich Header ProdIDs correspond to linker versions
    Although they are undocumented, we have used prior research as well as our
    own to determine many of them
    There are likely more linker version ProdIDs that we have not identified

    If the linker versions conflict, this function returns INVALID
    This indicates that the Rich header or PE header has been modified
    """
    if rich_header is None:
        rich_header = {}

    # Get list of @Comp.IDs and counts from Rich header
    # Elements in rich_fields at even indices are @Comp.IDs
    # Elements in rich_fields at odd indices are counts
    rich_fields = copy.deepcopy(rich_header.get("values", None))
    if len(rich_fields) % 2 != 0:
        return Result.UNABLE_TO_PARSE

    # Get list of ProdIDs from rich_fields
    prodids = []
    for i in range(len(rich_fields)):
        if i % 2 == 0:
            prodids.append(rich_fields[i] >> 16)

    # Parse major and minor linker versions from PE header
    pe_major = pe.OPTIONAL_HEADER.MajorLinkerVersion
    pe_minor = pe.OPTIONAL_HEADER.MinorLinkerVersion

    # Iterate over Rich header ProdIDs
    found_linker = False
    for prodid in prodids:

        # Only interested in ProdIDs that correspond to linker versions
        if KNOWN_PRODUCT_IDS.get(prodid) is None:
            continue
        prodid_name = KNOWN_PRODUCT_IDS[prodid]
        if not prodid_name.startswith("Linker"):
            continue

        found_linker = True

        # Parse major and minor linker version from ProdID
        prodid_name = prodid_name[6:]
        if prodid_name.endswith("p"):
            prodid_name = prodid_name[:-1]
        rich_major = int(prodid_name[:-2])
        rich_minor = int(prodid_name[-2:])

        # Check whether the Rich and PE linker versions match
        if pe_major == rich_major and pe_minor == rich_minor:
            return Result.VALID

    if not found_linker:
        return Result.UNABLE_TO_PARSE

    return Result.INVALID


def import_count_test(pe, rich_header):
    """Checks that import0 does not conflict with the IAT import count.

    The Rich header contains a ProdID called import0
    It is related to the number of imports in the IAT, but we are unsure how
    It is never less than the number of imports in the IAT

    If import0 is less than IAT import count, this function returns INVALID
    This indicates that the Rich header or IAT has been modified
    """
    if rich_header is None:
        rich_header = {}

    # Check whether the file has an IAT
    if not hasattr(pe, "DIRECTORY_ENTRY_IMPORT"):
        return Result.UNABLE_TO_PARSE

    # Get the number of imports in the IAT
    iat_count = 0
    for entry in pe.DIRECTORY_ENTRY_IMPORT:
        for imported_function in entry.imports:
            iat_count += 1

    # Get list of @Comp.IDs and counts from Rich header
    # Elements in rich_fields at even indices are @Comp.IDs
    # Elements in rich_fields at odd indices are counts
    rich_fields = copy.deepcopy(rich_header.get("values", None))
    if len(rich_fields) % 2 != 0:
        return Result.INVALID

    # Get @Comp.ID 65536 (ProdID Import0)
    import0_count = None
    while len(rich_fields):
        compid = rich_fields.pop(0)
        count = rich_fields.pop(0)
        if compid == 65536:
            import0_count = count

    # Legitimate files never have import0_count < iat_count
    if import0_count is None:
        return Result.VALID

    if import0_count < iat_count:
        return Result.INVALID

    return Result.VALID