Maciej Rybinski

40 papers A* 3A 4Misc 3Journal 15Unranked 15

Year	Rank	Type	Title / Venue / Authors
2026	J	`jnl`	Using a Human-AI Teaming Approach to Create and Curate Scientific Datasets with the SCILIRE System. CoRR Necva Bölücü, Jessica Irons, Changhyun Lee, Brian Jin, Maciej Rybinski, Huichen Yang, Andreas Duenser, Stephen Wan
2026	—	`conf`	Using a Human-AI Teaming Approach to Create and Curate Scientific Datasets with the SciLire System. EACL (System Demonstrations) Necva Bölücü, Jessica Irons, Changhyun Lee, Brian Jin, Maciej Rybinski, Huichen Yang, Andreas Duenser, Stephen Wan
2025	—	`conf`	Aligning AI Research with the Needs of Clinical Coding Workflows: Eight Recommendations Based on US Data Analysis and Critical Review. ACL (1) Yidong Gan, Maciej Rybinski, Ben Hachey, Jonathan K. Kummerfeld
2025	—	`conf`	Do We Really Need All Those Dimensions? An Intrinsic Evaluation Framework for Compressed Embeddings. EMNLP (Findings) Nathan Inkiriwang, Necva Bölücü, Garth Tarr, Maciej Rybinski
2025	A	`conf`	PEQQS: a Dataset for Probing Extractive Quantity-focused Question Answering from Scientific Literature. CIKM Maciej Rybinski, Necva Bölücü, Huichen Yang, Stephen Wan
2024	J	`jnl`	Aligning AI Research with the Needs of Clinical Coding Workflows: Eight Recommendations Based on US Data Analysis and Critical Review. CoRR Yidong Gan, Maciej Rybinski, Ben Hachey, Jonathan K. Kummerfeld
2024	J	`jnl`	An adaptive approach to noisy annotations in scientific information extraction. Inf. Process. Manag. Necva Bölücü, Maciej Rybinski, Xiang Dai, Stephen Wan
2024	J	`jnl`	Learning to match patients to clinical trials using large language models. J. Biomed. Informatics Maciej Rybinski, Wojciech Kusa, Sarvnaz Karimi, Allan Hanbury
2024	—	`conf`	YOKO ONtO: You only KNIT One Ontology. KGSWC Jorge Rodríguez-Revello, Cristóbal Barba-González, Maciej Rybinski, Ismael Navas-Delgado
2023	A	`conf`	A Self-Learning Resource-Efficient Re-Ranking Method for Clinical Trials Search. CIKM Maciej Rybinski, Vincent Nguyen, Sarvnaz Karimi
2023	—	`conf`	CSIRO Data61 Team at BioLaySumm Task 1: Lay Summarisation of Biomedical Research Articles Using Generative Models. BioNLP@ACL Mong Yuan Sim, Xiang Dai, Maciej Rybinski, Sarvnaz Karimi
2023	J	`jnl`	KNIT: Ontology reusability through knowledge graph exploration. Expert Syst. Appl. Jorge Rodríguez-Revello, Cristóbal Barba-González, Maciej Rybinski, Ismael Navas-Delgado
2023	—	`conf`	Matching of Patient Questionnaires to Clinical Trials with Large Language Models. TREC Maciej Rybinski, Sarvnaz Karimi
2023	—	`conf`	MedRedQA for Medical Consumer Question Answering: Dataset, Tasks, and Neural Baselines. IJCNLP (1) Vincent Nguyen, Sarvnaz Karimi, Maciej Rybinski, Zhenchang Xing
2023	A*	`conf`	SciHarvester: Searching Scientific Documents for Numerical Values. SIGIR Maciej Rybinski, Stephen Wan, Sarvnaz Karimi, Cécile Paris, Brian Jin, Neil I. Huth, Peter J. Thorburn, Dean P. Holzworth
2023	—	`conf`	impact of sample selection on in-context learning for entity extraction from scientific writing. EMNLP (Findings) Necva Bölücü, Maciej Rybinski, Stephen Wan
2022	A*	`conf`	A2A-API: A Prototype for Biomedical Information Retrieval Research and Benchmarking. SIGIR Maciej Rybinski, Liam Watts, Sarvnaz Karimi
2022	—	`conf`	Matching a Patient from An Admission Note to Clinical Trials: Experiments with Query Generation and Neural-Ranking. TREC Vincent Nguyen, Maciej Rybinski, Sarvnaz Karimi
2022	J	`jnl`	Search like an expert: Reducing expertise disparity using a hybrid neural index for COVID-19 queries. J. Biomed. Informatics Vincent Nguyen, Maciej Rybinski, Sarvnaz Karimi, Zhenchang Xing
2022	Misc	`conf`	The Role of Context in Vaccine Stance Prediction for Twitter Users. ALTA Aleney Khoo, Maciej Rybinski, Sarvnaz Karimi, Adam G. Dunn
2021	—	`conf`	CSIROmed Team Report of TREC 2021 Clinical Trials track: Experiments with BERT Reranking Methods. TREC Maciej Rybinski, Vincent Nguyen, Sarvnaz Karimi
2021	Misc	`conf`	Cross-Domain Language Modeling: An Empirical Investigation. ALTA Vincent Nguyen, Sarvnaz Karimi, Maciej Rybinski, Zhenchang Xing
2021	—	`conf`	Query-Focused Extractive Summarisation for Finding Ideal Answers to Biomedical and COVID-19 Questions. CLEF (Working Notes) Diego Mollá, Urvashi Khanna, Dima Galat, Vincent Nguyen, Maciej Rybinski
2021	J	`jnl`	Query-Focused Extractive Summarisation for Finding Ideal Answers to Biomedical and COVID-19 Questions. CoRR Diego Mollá, Urvashi Khanna, Dima Galat, Vincent Nguyen, Maciej Rybinski
2021	A*	`conf`	Science2Cure: A Clinical Trial Search Prototype. SIGIR Maciej Rybinski, Sarvnaz Karimi, Aleney Khoo
2021	A	`conf`	SearchEHR: A Family History Search System for Clinical Decision Support. CIKM Xiang Dai, Maciej Rybinski, Sarvnaz Karimi
2021	A	`conf`	Will Sorafenib Help?: Treatment-aware Reranking in Precision Medicine Search. CIKM Maciej Rybinski, Sarvnaz Karimi
2020	J	`jnl`	A2A: a platform for research in biomedical literature search. BMC Bioinform. Maciej Rybinski, Sarvnaz Karimi, Vincent Nguyen, Cécile Paris
2020	—	`conf`	CSIROmed at TREC Precision Medicine 2020. TREC Maciej Rybinski, Sarvnaz Karimi
2020	J	`jnl`	Clinical trial search: Using biomedical language understanding models for re-ranking. J. Biomed. Informatics Maciej Rybinski, Jerry Xu, Sarvnaz Karimi
2020	J	`jnl`	Searching Scientific Literature for Answers on COVID-19 Questions. CoRR Vincent Nguyen, Maciej Rybinski, Sarvnaz Karimi, Zhenchang Xing
2019	—	`conf`	CSIRO at 2019 TREC Precision Medicine Track. TREC Maciej Rybinski, Sarvnaz Karimi, Cécile Paris
2019	J	`jnl`	VIGLA-M: visual gene expression data analytics. BMC Bioinform. Ismael Navas-Delgado, José García-Nieto, Esteban López-Camacho, Maciej Rybinski, Rocio Lavado-Valenzuela, Miguel Ángel Berciano Guerrero, José Francisco Aldana-Montes
2018	—	`conf`	Introducing the HOBBIT platform into the ontology alignment evaluation campaign. OM@ISWC Ernesto Jiménez-Ruiz, Tzanina Saveta, Ondrej Zamazal, Sven Hertling, Michael Röder, Irini Fundulaki, Axel-Cyrille Ngonga Ngomo, Mohamed Ahmed Sherif, Amina Annane, Zohra Bellahsene, Sadok Ben Yahia, Gayo Diallo, Daniel Faria, Marouen Kachroudi, Abderrahmane Khiat, Patrick Lambrix, Huanyu Li, Maximilian Mackeprang, Majid Mohammadi, Maciej Rybinski, Booma Sowkarthiga Balasubramani, Cássia Trojahn
2018	Misc	`conf`	On the Design and Tuning of Machine Learning Models for Language Toxicity Classification in Online Platforms. IDC Maciej Rybinski, William Miller, Javier Del Ser, Miren Nekane Bilbao, José Francisco Aldana-Montes
2017	J	`jnl`	DomESA: a novel approach for extending domain-oriented lexical relatedness calculations with domain-specific semantics. J. Intell. Inf. Syst. Maciej Rybinski, José Francisco Aldana-Montes
2016	—	`conf`	DisMatch results for OAEI 2016. OM@ISWC Maciej Rybinski, María del Mar Roldán-García, José García-Nieto, José Francisco Aldana-Montes
2016	J	`jnl`	tESA: a distributional measure for calculating semantic relatedness. J. Biomed. Semant. Maciej Rybinski, José Francisco Aldana-Montes
2015	J	`jnl`	kpath: integration of metabolic pathway linked data. Database J. Biol. Databases Curation Ismael Navas-Delgado, María Jesús García-Godoy, Esteban López-Camacho, Maciej Rybinski, Armando Reyes-Palomares, Miguel Angel Medina, José Francisco Aldana-Montes
2014	J	`jnl`	Calculating semantic relatedness for biomedical use in a knowledge-poor environment. BMC Bioinform. Maciej Rybinski, José Francisco Aldana-Montes