Maciej Antczak

26 papers Journal 24Unranked 2

Year	Rank	Type	Title / Venue / Authors
2025	J	`jnl`	Exact algorithms for the satellite image selection problem. Int. J. Appl. Math. Comput. Sci. Sylwester Swat, Maciej Antczak, Tomasz Zok, Jacek Blazewicz, Jedrzej Musial
2025	J	`jnl`	Graph neural network and diffusion model for modeling RNA interatomic interactions. Bioinform. Marek Justyna, Craig L. Zirbel, Maciej Antczak, Marta Szachniuk
2025	J	`jnl`	RNAtive to recognize native-like structure in a set of RNA 3D models. Bioinform. Jan Pielesiak, Maciej Antczak, Marta Szachniuk, Tomasz Zok
2024	J	`jnl`	Knotted artifacts in predicted 3D RNA structures. PLoS Comput. Biol. Bartosz Ambrozy Gren, Maciej Antczak, Tomasz Zok, Joanna I. Sulkowska, Marta Szachniuk
2023	J	`jnl`	High-quality, customizable heuristics for RNA 3D structure alignment. Bioinform. Michal Zurkowski, Maciej Antczak, Marta Szachniuk
2023	J	`jnl`	Machine learning for RNA 2D structure prediction benchmarked on experimental data. Briefings Bioinform. Marek Justyna, Maciej Antczak, Marta Szachniuk
2022	J	`jnl`	RNAloops: a database of RNA multiloops. Bioinform. Jakub Wiedemann, Jacek Kaczor, Maciej Milostan, Tomasz Zok, Jacek Blazewicz, Marta Szachniuk, Maciej Antczak
2022	J	`jnl`	RNAsolo: a repository of cleaned PDB-derived RNA 3D structures. Bioinform. Bartosz Adamczyk, Maciej Antczak, Marta Szachniuk
2022	J	`jnl`	RNAspider: a webserver to analyze entanglements in RNA 3D structures. Nucleic Acids Res. Kamil Luwanski, Vladyslav Hlushchenko, Mariusz Popenda, Tomasz Zok, Joanna Sarzynska, Daniil Martsich, Marta Szachniuk, Maciej Antczak
2021	J	`jnl`	Brilliant Challenges Optimization Problem Submission Contest Final Report. CoRR Jan Badura, Artur Laskowski, Maciej Antczak, Jacek Blazewicz, Grzegorz Pawlak, Erwin Pesch, Thomas Villmann, Szymon Wasik
2020	J	`jnl`	New models and algorithms for RNA pseudoknot order assignment. Int. J. Appl. Math. Comput. Sci. Tomasz Zok, Jan Badura, Sylwester Swat, Kacper Figurski, Mariusz Popenda, Maciej Antczak
2019	J	`jnl`	RNAvista: a webserver to assess RNA secondary structures with non-canonical base pairs. Bioinform. Maciej Antczak, Marcin Zablocki, Tomasz Zok, Agnieszka Rybarczyk, Jacek Blazewicz, Marta Szachniuk
2018	J	`jnl`	A Survey on Online Judge Systems and Their Applications. ACM Comput. Surv. Szymon Wasik, Maciej Antczak, Jan Badura, Artur Laskowski, Tomasz Sternal
2018	J	`jnl`	Evaluation as a Service architecture and crowdsourced problems solving implemented in Optil.io platform. CoRR Szymon Wasik, Maciej Antczak, Jan Badura, Artur Laskowski
2018	J	`jnl`	New algorithms to represent complex pseudoknotted RNA structures in dot-bracket notation. Bioinform. Maciej Antczak, Mariusz Popenda, Tomasz Zok, Michal Zurkowski, Ryszard W. Adamiak, Marta Szachniuk
2018	J	`jnl`	RNAfitme: a webserver for modeling nucleobase and nucleoside residue conformation in fixed-backbone RNA structures. BMC Bioinform. Maciej Antczak, Tomasz Zok, Maciej Osowiecki, Mariusz Popenda, Ryszard W. Adamiak, Marta Szachniuk
2018	J	`jnl`	RNApdbee 2.0: multifunctional tool for RNA structure annotation. Nucleic Acids Res. Tomasz Zok, Maciej Antczak, Michal Zurkowski, Mariusz Popenda, Jacek Blazewicz, Ryszard W. Adamiak, Marta Szachniuk
2017	J	`jnl`	A Survey on Online Judge Systems and Their Applications. CoRR Szymon Wasik, Maciej Antczak, Jan Badura, Artur Laskowski, Tomasz Sternal
2016	J	`jnl`	High-order statistical compressor for long-term storage of DNA sequencing data. RAIRO Oper. Res. Marek Chlopkowski, Maciej Antczak, Michal Slusarczyk, Aleksander Wdowinski, Michal Zajaczkowski, Marta Kasprzak
2016	—	`conf`	Optil.io: Cloud Based Platform For Solving Optimization Problems Using Crowdsourcing Approach. CSCW Companion Szymon Wasik, Maciej Antczak, Jan Badura, Artur Laskowski, Tomasz Sternal
2016	J	`jnl`	Structural alignment of protein descriptors - a combinatorial model. BMC Bioinform. Maciej Antczak, Marta Kasprzak, Piotr Lukasiak, Jacek Blazewicz
2015	J	`jnl`	Building the Library of Rna 3D Nucleotide Conformations Using the Clustering Approach. Int. J. Appl. Math. Comput. Sci. Tomasz Zok, Maciej Antczak, Martin Riedel, David Nebel, Thomas Villmann, Piotr Lukasiak, Jacek Blazewicz, Marta Szachniuk
2015	J	`jnl`	New in silico approach to assessing RNA secondary structures with non-canonical base pairs. BMC Bioinform. Agnieszka Rybarczyk, Natalia Szostak, Maciej Antczak, Tomasz Zok, Mariusz Popenda, Ryszard W. Adamiak, Jacek Blazewicz, Marta Szachniuk
2015	J	`jnl`	RNAssess - a web server for quality assessment of RNA 3D structures. Nucleic Acids Res. Piotr Lukasiak, Maciej Antczak, Tomasz Ratajczak, Marta Szachniuk, Mariusz Popenda, Ryszard W. Adamiak, Jacek Blazewicz
2015	—	`conf`	SphereGrinder - reference structure-based tool for quality assessment of protein structural models. BIBM Piotr Lukasiak, Maciej Antczak, Tomasz Ratajczak, Jacek Blazewicz
2014	J	`jnl`	RNApdbee - a webserver to derive secondary structures from pdb files of knotted and unknotted RNAs. Nucleic Acids Res. Maciej Antczak, Tomasz Zok, Mariusz Popenda, Piotr Lukasiak, Ryszard W. Adamiak, Jacek Blazewicz, Marta Szachniuk