Maarten J. A. van Alphen

12 papers A 1Journal 11
YearRankTypeTitle / Venue / Authors
2026 J jnl
Int. J. Comput. Assist. Radiol. Surg.
Melda Yeghaian, Stefano Trebeschi, Marina Herrero-Huertas, Francisco Javier Mendoza Ferradás, Paula Bos, Maarten J. A. van Alphen, Marcel A. J. van Gerven, Regina G. H. Beets-Tan, Zuhir Bodalal, Lilly-Ann van der Velden
2025 J jnl
Int. J. Comput. Assist. Radiol. Surg.
L. M. N. Aukema, A. Fleur de Geer, Maarten J. A. van Alphen, Willem Hans Schreuder, Robert Leonardus Petrus van Veen, Theo Jacques Marie Ruers, Françoise J. Siepel, Munir Baris Karakullukcu
2024 J jnl
Int. J. Comput. Assist. Radiol. Surg.
Tjitske Bannink, M. de Ridder, S. Bouman, Maarten J. A. van Alphen, Robert Leonardus Petrus van Veen, Michiel W. M. van den Brekel, Munir Baris Karakullukcu
2023 J jnl
J. Digit. Imaging
Hans Veerman, Caroline M. A. Hoeks, Judith H. Sluijter, Jari A. van der Eijk, Thierry N. Boellaard, Ton A. Roeleveld, Tim M. van der Sluis, Jakko A. Nieuwenhuijzen, Esther Wit, Erik-Jan Rijkhorst, Martijn W. Heymans, Maarten J. A. van Alphen, Robert Leonardus Petrus van Veen, André N. Vis, Henk G. van der Poel, Pim J. van Leeuwen
2023 J jnl
Int. J. Comput. Assist. Radiol. Surg.
Nicolaas M. Bekedam, Luc H. E. Karssemakers, Maarten J. A. van Alphen, Robert Leonardus Petrus van Veen, Ludi E. Smeele, Munir Baris Karakullukcu
2022 J jnl
Int. J. Comput. Assist. Radiol. Surg.
A. Fleur de Geer, Maarten J. A. van Alphen, C. Lotje Zuur, Arjo J. Loeve, Robert Leonardus Petrus van Veen, Munir Baris Karakullukcu
2020 J jnl
Int. J. Comput. Assist. Radiol. Surg.
Timon Peter ter Braak, Susan G. Brouwer de Koning, Maarten J. A. van Alphen, Ferdinand van der Heijden, Willem Hans Schreuder, Robert Leonardus Petrus van Veen, Munir Baris Karakullukcu
2020 J jnl
Int. J. Comput. Assist. Radiol. Surg.
Susan G. Brouwer de Koning, J. J. M. Riksen, Timon Peter ter Braak, Maarten J. A. van Alphen, Ferdinand van der Heijden, Willem Hans Schreuder, Luc H. E. Karssemakers, Munir Baris Karakullukcu, Robert Leonardus Petrus van Veen
2019 A conf
INTERSPEECH
Kicky G. van Leeuwen, Paula Bos, Stefano Trebeschi, Maarten J. A. van Alphen, Luuk Voskuilen, Ludi E. Smeele, Ferdi van der Heijden, R. J. J. H. van Son
2018 J jnl
Int. J. Comput. Assist. Radiol. Surg.
Merijn Eskes, Alfons J. M. Balm, Maarten J. A. van Alphen, Ludi E. Smeele, Ian Stavness, Ferdinand van der Heijden
2017 J jnl
Comput. methods Biomech. Biomed. Eng. Imaging Vis.
Maarten J. A. van Alphen, Merijn Eskes, Ludi E. Smeele, Alfons J. M. Balm, Ferdinand van der Heijden
2017 J jnl
Medical Biol. Eng. Comput.
Merijn Eskes, Maarten J. A. van Alphen, Ludi E. Smeele, Dieta Brandsma, Alfons J. M. Balm, Ferdinand van der Heijden
redb/extractors/js_extractors/js_deobfuscator.py
← Index redb/extractors/js_extractors/js_deobfuscator.py python
"""Subprocess-driven JavaScript deobfuscator with jsbeautifier fallback.

Owns the heavy lifting that was previously embedded inside
`JSDeobfuscationExtractor` (`_run_deobfuscator` + `_try_jsbeautifier`). Exposed
as a single module-level entry point `deobfuscate(source, log)` so it can be
called from `JSContext.deobfuscated` (cached per sample) without dragging
extractor state through the call.

Configuration (env vars):
    JS_DEOBFUSCATOR_PATH    Path or name of the external tool (default: webcrack).
    JS_DEOBFUSCATE_TIMEOUT  Seconds before the external tool is killed
                            (process-group SIGTERM, then SIGKILL). Default: 60.

If the external tool produces non-empty output and exits 0, that wins. Otherwise
the source is run through jsbeautifier (which only normalises formatting, but
already exposes strings hidden by minification). If neither path produces
output, returns (None, None).

`FileNotFoundError` for the external tool is treated as routine — the analysis
server is either provisioned with the tool or it isn't — and demoted to a
debug-level log.
"""

import os
import signal
import subprocess
import tempfile
from typing import Optional, Tuple

DEFAULT_DEOBFUSCATOR = "webcrack"
DEFAULT_TIMEOUT_SECS = 60


def _run_external(
    source: str, deobfuscator_path: str, timeout: int, log
) -> Tuple[Optional[str], int]:
    """Run the configured external deobfuscator over `source` and capture stdout.

    Returns (text, returncode). `text` is `None` and `returncode` is `-1` when
    the binary is missing, the run timed out, or any other unexpected failure
    occurred. Missing-binary is logged at debug; timeouts and unexpected errors
    surface at warning/error.
    """
    try:
        with tempfile.NamedTemporaryFile(
            suffix=".js", mode="w", delete=False, encoding="utf-8"
        ) as tmp:
            tmp.write(source)
            tmp_path = tmp.name

        try:
            process = subprocess.Popen(
                [deobfuscator_path, tmp_path],
                stdout=subprocess.PIPE,
                stderr=subprocess.PIPE,
                preexec_fn=os.setsid,
            )

            try:
                stdout, _ = process.communicate(timeout=timeout)
                return stdout.decode("utf-8", errors="replace"), process.returncode
            except subprocess.TimeoutExpired:
                # Kill the entire process group so spawned helpers (e.g. node
                # subprocesses webcrack itself launches) get cleaned up too.
                try:
                    os.killpg(os.getpgid(process.pid), signal.SIGTERM)
                    process.wait(timeout=5)
                except Exception:
                    try:
                        os.killpg(os.getpgid(process.pid), signal.SIGKILL)
                    except Exception:
                        pass
                log.warning(f"Deobfuscation timed out after {timeout}s")
                return None, -1
        finally:
            try:
                os.unlink(tmp_path)
            except Exception:
                pass
    except FileNotFoundError:
        log.debug(f"Deobfuscator binary not found at {deobfuscator_path}")
        return None, -1
    except Exception as e:
        log.error(f"Error running deobfuscator: {e}")
        return None, -1


def _try_jsbeautifier(source: str, log) -> Tuple[Optional[str], Optional[str]]:
    """Fallback path: format the source with jsbeautifier. Returns
    `(text, "jsbeautifier")` or `(None, None)` if jsbeautifier isn't installed
    or the call raised."""
    try:
        import jsbeautifier
        opts = jsbeautifier.default_options()
        opts.indent_size = 2
        return jsbeautifier.beautify(source, opts), "jsbeautifier"
    except ImportError:
        log.debug("jsbeautifier not available")
        return None, None
    except Exception as e:
        log.warning(f"jsbeautifier failed: {e}")
        return None, None


def deobfuscate(source: str, log) -> Tuple[Optional[str], Optional[str]]:
    """Run the configured external deobfuscator, falling back to jsbeautifier.

    Returns `(text, normalizer_used)` on success, or `(None, None)` when neither
    path produced non-empty output. `normalizer_used` is the basename of the
    external tool (e.g. `"webcrack"`) or the literal `"jsbeautifier"`.
    """
    if not source:
        return None, None

    deobfuscator_path = os.getenv("JS_DEOBFUSCATOR_PATH", DEFAULT_DEOBFUSCATOR)
    timeout = int(os.getenv("JS_DEOBFUSCATE_TIMEOUT", str(DEFAULT_TIMEOUT_SECS)))

    text, returncode = _run_external(source, deobfuscator_path, timeout, log)
    if text and returncode == 0 and text.strip():
        return text, os.path.basename(deobfuscator_path)

    return _try_jsbeautifier(source, log)