M. Mallar Chakravarty

51 papers Journal 44Unranked 7

Year	Rank	Type	Title / Venue / Authors
2024	J	`jnl`	WarpDrive: Improving spatial normalization using manual refinements. Medical Image Anal. Simon Oxenford, Ana Sofía Ríos, Barbara Hollunder, Clemens Neudorfer, Alexandre Boutet, Gavin J. B. Elias, Jürgen Germann, Aaron Loh, Wissam Deeb, Bryan Salvato, Leonardo Almeida, Kelly D. Foote, Robert S. C. Amaral, Paul B. Rosenberg, David F. Tang-Wai, David A. Wolk, Anna D. Burke, Marwan N. Sabbagh, Stephen Salloway, M. Mallar Chakravarty, Gwenn S. Smith, Constantine G. Lyketsos, Michael S. Okun, William S. Anderson, Zoltan Mari, Francisco A. Ponce, Andres M. Lozano, Wolf-Julian Neumann, Bassam Al-Fatly, Andreas Horn
2023	J	`jnl`	A cross-sectional and longitudinal study of human brain development: The integration of cortical thickness, surface area, gyrification index, and cortical curvature into a unified analytical framework. NeuroImage Hadis Kalantar Hormozi, Raihaan Patel, Alyssa Dai, Justine Ziolkowski, Hao-Ming Dong, Avram J. Holmes, Armin Raznahan, Gabriel A. Devenyi, M. Mallar Chakravarty
2023	J	`jnl`	Examining litter specific variability in mice and its impact on neurodevelopmental studies. NeuroImage Vanessa Valiquette, Elisa Guma, Lani Cupo, Daniel Gallino, Chloe Anastassiadis, Emily Snook, Gabriel A. Devenyi, M. Mallar Chakravarty
2022	J	`jnl`	Analyses of microstructural variation in the human striatum using non-negative matrix factorization. NeuroImage Corinne Robert, Raihaan Patel, Nadia Blostein, Chrisopher J. Steele, M. Mallar Chakravarty
2022	J	`jnl`	Inter- and intra-individual variation in brain structural-cognition relationships in aging. NeuroImage Raihaan Patel, Clare E. Mackay, Michelle G. Jansen, Gabriel A. Devenyi, M. Clare O'Donoghue, Mika Kivimäki, Archana Singh-Manoux, Eniko Zsoldos, Klaus P. Ebmeier, M. Mallar Chakravarty, Sana Suri
2022	J	`jnl`	Mapping pontocerebellar connectivity with diffusion MRI. NeuroImage Paul-Noel Rousseau, M. Mallar Chakravarty, Christopher John Steele
2021	J	`jnl`	Embracing diversity and inclusivity in an academic setting: Insights from the Organization for Human Brain Mapping. NeuroImage Athina Tzovara, Ishmael Amarreh, Valentina Borghesani, M. Mallar Chakravarty, Elizabeth DuPre, Christian Grefkes, Amelie Haugg, Lee Jollans, Hyang Woon Lee, Sharlene D. Newman, Rosanna K. Olsen, J. Tilak Ratnanather, Gina Rippon, Lucina Q. Uddin, Maria L. Bringas-Vega, Michele Veldsman, Tonya White, AmanPreet Badhwar
2021	J	`jnl`	Hippocampal subfield volumes across the healthy lifespan and the effects of MR sequence on estimates. NeuroImage Aurélie Bussy, Eric Plitman, Raihaan Patel, Stephanie Tullo, Alyssa Salaciak, Saashi A. Bedford, Sarah Farzin, Marie-Lise Béland, Vanessa Valiquette, Christina Kazazian, Christine Lucas Tardif, Gabriel A. Devenyi, M. Mallar Chakravarty
2021	J	`jnl`	Maturational trajectories of pericortical contrast in typical brain development. NeuroImage Stefan Drakulich, Anne-Charlotte Thiffault, Emily R. Olafson, Olivier Parent, Aurélie Labbe, Matthew D. Albaugh, Budhachandra S. Khundrakpam, Simon Ducharme, Alan C. Evans, M. Mallar Chakravarty, Sherif Karama
2021	J	`jnl`	The impact of the Siemens Tim Trio to Prisma upgrade and the addition of volumetric navigators on cortical thickness, structure volume, and NeuroImage Eric Plitman, Aurélie Bussy, Vanessa Valiquette, Alyssa Salaciak, Raihaan Patel, Lani Cupo, Marie-Lise Béland, Stephanie Tullo, Christine Lucas Tardif, M. Natasha Rajah, Jamie Near, Gabriel A. Devenyi, M. Mallar Chakravarty
2020	J	`jnl`	Investigating microstructural variation in the human hippocampus using non-negative matrix factorization. NeuroImage Raihaan Patel, Christopher John Steele, Anthony G. X. Chen, Sejal Patel, Gabriel A. Devenyi, Jürgen Germann, Christine L. Tardif, M. Mallar Chakravarty
2020	J	`jnl`	Sex-biased trajectories of amygdalo-hippocampal morphology change over human development. NeuroImage Ari M. Fish, Ajay Nadig, Jakob Seidlitz, Paul K. Reardon, Catherine Mankiw, Cassidy L. McDermott, Jonathan D. Blumenthal, Liv S. Clasen, François Lalonde, Jason P. Lerch, M. Mallar Chakravarty, Russell T. Shinohara, Armin Raznahan
2019	J	`jnl`	Animal Functional Magnetic Resonance Imaging: Trends and Path Toward Standardization. Frontiers Neuroinformatics Francesca Mandino, Domenic H. Cerri, Clément M. Garin, Milou Straathof, Geralda A. F. van Tilborg, M. Mallar Chakravarty, Marc Dhenain, Rick M. Dijkhuizen, Alessandro Gozzi, Andreas Hess, Shella D. Keilholz, Jason P. Lerch, Yen-Yu Ian Shih, Joanes Grandjean
2019	J	`jnl`	White matter injury in term neonates with congenital heart diseases: Topology & comparison with preterm newborns. NeuroImage Ting Guo, Vann Chau, Shabnam Peyvandi, Beatrice Latal, Patrick S. McQuillen, Walter Knirsch, Anne Synnes, Maria Feldmann, Nadja Naef, M. Mallar Chakravarty, Alessandra De Petrillo, Emma G. Duerden, A. James Barkovich, Steven P. Miller
2018	J	`jnl`	Corrigendum to "Hippocampus and amygdala volumes from magnetic resonance images in children: Assessing accuracy of FreeSurfer and FSL against manual segmentation"[NeuroImage 129 (2016) 1-14]. NeuroImage Dorothee Schoemaker, Claudia Buss, Kevin Head, Curt A. Sandman, Elysia Poggi Davis, M. Mallar Chakravarty, Serge Gauthier, Jens C. Pruessner
2018	J	`jnl`	Evaluating accuracy of striatal, pallidal, and thalamic segmentation methods: Comparing automated approaches to manual delineation. NeuroImage Carolina Makowski, Sophie Béland, Penelope Kostopoulos, Nikhil Bhagwat, Gabriel A. Devenyi, Ashok K. Malla, Ridha Joober, Martin D. Lepage, M. Mallar Chakravarty
2018	J	`jnl`	Gray-matter structural variability in the human cerebellum: Lobule-specific differences across sex and hemisphere. NeuroImage Christopher John Steele, M. Mallar Chakravarty
2018	J	`jnl`	Heritability estimates of cortical anatomy: The influence and reliability of different estimation strategies. NeuroImage Sejal Patel, Raihaan Patel, Min Tae M. Park, Mario Masellis, Jo Knight, M. Mallar Chakravarty
2018	J	`jnl`	Learning to Unlearn: Building Immunity to Dataset Bias in Medical Imaging Studies. CoRR Ahmed Ashraf, Shehroz S. Khan, Nikhil Bhagwat, M. Mallar Chakravarty, Babak Taati
2018	J	`jnl`	Manual segmentation of the fornix, fimbria, and alveus on high-resolution 3T MRI: Application via fully-automated mapping of the human memory circuit white and grey matter in healthy and pathological aging. NeuroImage Robert S. C. Amaral, Min Tae M. Park, Gabriel A. Devenyi, Vivian Lynn, Jon Pipitone, Julie L. Winterburn, Sofia Chavez, Mark M. Schira, Nancy J. Lobaugh, Aristotle N. Voineskos, Jens C. Pruessner, M. Mallar Chakravarty
2018	J	`jnl`	Modeling and prediction of clinical symptom trajectories in Alzheimer's disease using longitudinal data. PLoS Comput. Biol. Nikhil Bhagwat, Joseph D. Viviano, Aristotle N. Voineskos, M. Mallar Chakravarty, Alzheimer's Disease Neuroimaging Initiative
2018	J	`jnl`	Regional brain volume changes following chronic antipsychotic administration are mediated by the dopamine D2 receptor. NeuroImage Elisa Guma, Jill Rocchetti, Gabriel A. Devenyi, Arnaud Tanti, Axel Mathieu, Jason P. Lerch, Guillaume Elgbeili, Blandine Courcot, Naguib Mechawar, M. Mallar Chakravarty, Bruno Giros
2018	J	`jnl`	Toward defining deep brain stimulation targets in MNI space: A subcortical atlas based on multimodal MRI, histology and structural connectivity. NeuroImage Siobhan Ewert, Philip Plettig, Ningfei Li, M. Mallar Chakravarty, D. Louis Collins, Todd M. Herrington, Andrea A. Kühn, Andreas Horn
2017	J	`jnl`	BIDS apps: Improving ease of use, accessibility, and reproducibility of neuroimaging data analysis methods. PLoS Comput. Biol. Krzysztof J. Gorgolewski, Fidel Alfaro-Almagro, Tibor Auer, Pierre Bellec, Mihai Capota, M. Mallar Chakravarty, Nathan William Churchill, Alexander Li Cohen, R. Cameron Craddock, Gabriel A. Devenyi, Anders Eklund, Oscar Esteban, Guillaume Flandin, Satrajit S. Ghosh, J. Swaroop Guntupalli, Mark Jenkinson, Anisha Keshavan, Gregory Kiar, Franziskus Liem, Pradeep Reddy Raamana, David Raffelt, Christopher John Steele, Pierre-Olivier Quirion, Robert E. Smith, Stephen C. Strother, Gaël Varoquaux, Yida Wang, Tal Yarkoni, Russell A. Poldrack
2017	J	`jnl`	CERES: A new cerebellum lobule segmentation method. NeuroImage José E. Romero, Pierrick Coupé, Rémi Giraud, Vinh-Thong Ta, Vladimir S. Fonov, Min Tae M. Park, M. Mallar Chakravarty, Aristotle N. Voineskos, José V. Manjón
2016	J	`jnl`	Deep brain stimulation of the ventromedial prefrontal cortex causes reorganization of neuronal processes and vasculature. NeuroImage M. Mallar Chakravarty, Clement Hamani, Alonso Martinez-Canabal, Jacob Ellegood, Christine L. Laliberté, José N. Nobrega, Tejas Sankar, Andres M. Lozano, Paul W. Frankland, Jason P. Lerch
2016	J	`jnl`	Gene Prioritization for Imaging Genetics Studies Using Gene Ontology and a Stratified False Discovery Rate Approach. Frontiers Neuroinformatics Sejal Patel, Min Tae M. Park, M. Mallar Chakravarty, Jo Knight
2016	J	`jnl`	Hippocampus and amygdala volumes from magnetic resonance images in children: Assessing accuracy of FreeSurfer and FSL against manual segmentation. NeuroImage Dorothee Schoemaker, Claudia Buss, Kevin Head, Curt A. Sandman, Elysia Poggi Davis, M. Mallar Chakravarty, Serge Gauthier, Jens C. Pruessner
2015	—	`conf`	Improving multi-atlas segmentation accuracy by leveraging local neighborhood information during label-fusion. ISBI Nikhil Bhagwat, Jon Pipitone, Aristotle N. Voineskos, Jens C. Pruessner, M. Mallar Chakravarty
2015	J	`jnl`	Multi-contrast unbiased MRI atlas of a Parkinson's disease population. Int. J. Comput. Assist. Radiol. Surg. Yiming Xiao, Vladimir S. Fonov, Silvain Bériault, Fahd Al Subaie, M. Mallar Chakravarty, Abbas F. Sadikot, G. Bruce Pike, D. Louis Collins
2015	J	`jnl`	Quantitative comparison of 21 protocols for labeling hippocampal subfields and parahippocampal subregions in in vivo MRI: Towards a harmonized segmentation protocol. NeuroImage Paul A. Yushkevich, Robert S. C. Amaral, Jean C. Augustinack, Andrew R. Bender, Jeffrey D. Bernstein, Marina Boccardi, Martina Bocchetta, Alison C. Burggren, Valerie A. Carr, M. Mallar Chakravarty, Gaël Chételat, Ana M. Daugherty, Lila Davachi, Song-Lin Ding, Arne D. Ekstrom, Mirjam I. Geerlings, Abdul Hassan, Yushan Huang, Juan Eugenio Iglesias, Renaud La Joie, Geoffrey A. Kerchner, Karen F. LaRocque, Laura A. Libby, Nikolai Malykhin, Susanne G. Mueller, Rosanna K. Olsen, Daniela J. Palombo, Mansi B. Parekh
2015	J	`jnl`	Regional cerebellar volumes are related to early musical training and finger tapping performance. NeuroImage Lawrence H. Baer, Min Tae M. Park, Jennifer Anne Bailey, M. Mallar Chakravarty, K. Z. H. Li, Virginia B. Penhune
2014	J	`jnl`	Derivation of high-resolution MRI atlases of the human cerebellum at 3 T and segmentation using multiple automatically generated templates. NeuroImage Min Tae M. Park, Jon Pipitone, Lawrence H. Baer, Julie L. Winterburn, Yashvi Shah, Sofia Chavez, Mark M. Schira, Nancy J. Lobaugh, Jason P. Lerch, Aristotle N. Voineskos, M. Mallar Chakravarty
2014	J	`jnl`	Estimating volumes of the pituitary gland from T1-weighted magnetic-resonance images: Effects of age, puberty, testosterone, and estradiol. NeuroImage Angelita Pui-Yee Wong, Jon Pipitone, Min Tae M. Park, Erin W. Dickie, Gabriel Leonard, Michel Perron, G. Bruce Pike, Louis Richer, Suzanne Veillette, M. Mallar Chakravarty, Zdenka Pausova, Tomás Paus
2014	J	`jnl`	Multi-atlas segmentation of the whole hippocampus and subfields using multiple automatically generated templates. NeuroImage Jon Pipitone, Min Tae M. Park, Julie L. Winterburn, Tristram A. Lett, Jason P. Lerch, Jens C. Pruessner, Martin D. Lepage, Aristotle N. Voineskos, M. Mallar Chakravarty
2014	J	`jnl`	Pydpiper: a flexible toolkit for constructing novel registration pipelines. Frontiers Neuroinformatics Miriam Friedel, Matthijs C. van Eede, Jon Pipitone, M. Mallar Chakravarty, Jason P. Lerch
2013	J	`jnl`	A novel in vivo atlas of human hippocampal subfields using high-resolution 3 T magnetic resonance imaging. NeuroImage Julie L. Winterburn, Jens C. Pruessner, Sofia Chavez, Mark M. Schira, Nancy J. Lobaugh, Aristotle N. Voineskos, M. Mallar Chakravarty
2013	J	`jnl`	Does skull shape mediate the relationship between objective features and subjective impressions about the face? NeuroImage Klára Marecková, M. Mallar Chakravarty, Mei Huang, Claire Lawrence, Gabriel Leonard, Michel Perron, G. Bruce Pike, Louis Richer, Suzanne Veillette, Zdenka Pausova, Tomás Paus
2013	J	`jnl`	Mapping registration sensitivity in MR mouse brain images. NeuroImage Matthijs C. van Eede, Jan Scholz, M. Mallar Chakravarty, R. Mark Henkelman, Jason P. Lerch
2012	—	`conf`	Atlas-Based Segmentation of the Subthalamic Nucleus, Red Nucleus, and Substantia Nigra for Deep Brain Stimulation by Incorporating Multiple MRI Contrasts. IPCAI Yiming Xiao, Lara Bailey, M. Mallar Chakravarty, Silvain Bériault, Abbas F. Sadikot, G. Bruce Pike, D. Louis Collins
2011	J	`jnl`	An MRI based average macaque monkey stereotaxic atlas and space (MNI monkey space). NeuroImage Stephen Frey, Deepak N. Pandya, M. Mallar Chakravarty, Lara Bailey, Michael Petrides, D. Louis Collins
2010	J	`jnl`	Blindsight Mediated by an S-Cone-independent Collicular Pathway: An fMRI Study in Hemispherectomized Subjects. J. Cogn. Neurosci. Sandra E. Leh, Alain Ptito, Marc Schönwiesner, M. Mallar Chakravarty, Kathy T. Mullen
2010	J	`jnl`	Neurite density from magnetic resonance diffusion measurements at ultrahigh field: Comparison with light microscopy and electron microscopy. NeuroImage Sune Nørhøj Jespersen, Carsten Reidies Bjarkam, Jens R. Nyengaard, M. Mallar Chakravarty, Brian Hansen, Thomas Vosegaard, Leif Østergaard, Dmitriy A. Yablonskiy, Niels Chr. Nielsen, Peter Vestergaard-Poulsen
2008	—	`conf`	Development of FMRI techniques for planning in functional neurosurgery for Parkinson's disease. ISBI M. Mallar Chakravarty, Pedro Rosa-Neto, Scott Broadbent, Alan C. Evans, D. Louis Collins
2008	J	`jnl`	The Connectivity of the Human Pulvinar: A Diffusion Tensor Imaging Tractography Study. Int. J. Biomed. Imaging Sandra E. Leh, M. Mallar Chakravarty, Alain Ptito
2008	—	`conf`	Three-dimensional reconstruction of serial histological mouse brain sections. ISBI M. Mallar Chakravarty, Barry J. Bedell, Simone P. Zehntner, Alan C. Evans, D. Louis Collins
2008	J	`jnl`	Towards a validation of atlas warping techniques. Medical Image Anal. M. Mallar Chakravarty, Abbas F. Sadikot, Jürgen Germann, Gilles Bertrand, D. Louis Collins
2006	J	`jnl`	The creation of a brain atlas for image guided neurosurgery using serial histological data. NeuroImage M. Mallar Chakravarty, Gilles Bertrand, Charles P. Hodge, Abbas F. Sadikot, D. Louis Collins
2006	—	`conf`	Towards a Multi-modal Atlas for Neurosurgical Planning. MICCAI (2) M. Mallar Chakravarty, Abbas F. Sadikot, Sanjay Mongia, Gilles Bertrand, D. Louis Collins
2005	—	`conf`	Anatomical and Electrophysiological Validation of an Atlas for Neurosurgical Planning. MICCAI (2) M. Mallar Chakravarty, Abbas F. Sadikot, Jürgen Germann, Gilles Bertrand, D. Louis Collins
2003	—	`conf`	The Creation of a Brain Atlas for Image Guided Neurosurgery Using Serial Histological Data. MICCAI (1) M. Mallar Chakravarty, Gilles Bertrand, Maxime Descoteaux, Abbas F. Sadikot, D. Louis Collins