Luís Pedro Coelho

18 papers C 1Journal 12Unranked 5
YearRankTypeTitle / Venue / Authors
2025 J jnl
argNorm: normalization of antibiotic resistance gene annotations to the Antibiotic Resistance Ontology (ARO).
Bioinform.
Svetlana Ugarcina Perovic, Vedanth Ramji, Hui Chong, Yiqian Duan, Finlay Maguire, Luís Pedro Coelho
2024 J jnl
For long-term sustainable software in bioinformatics.
PLoS Comput. Biol.
Luís Pedro Coelho
2023 J jnl
ResFinderFG v2.0: a database of antibiotic resistance genes obtained by functional metagenomics.
Nucleic Acids Res.
Rémi Gschwind, Svetlana Ugarcina Perovic, Maja Weiss, Marie Petitjean, Julie Lao, Luís Pedro Coelho, Etienne Ruppé
2023 J jnl
SemiBin2: self-supervised contrastive learning leads to better MAGs for short- and long-read sequencing.
Bioinform.
Shaojun Pan, Xing-Ming Zhao, Luís Pedro Coelho
2022 J jnl
EXPERT: transfer learning-enabled context-aware microbial community classification.
Briefings Bioinform.
Hui Chong, Yuguo Zha, Qingyang Yu, Mingyue Cheng, Guangzhou Xiong, Nan Wang, Xinhe Huang, Shijuan Huang, Chuqing Sun, Sicheng Wu, Wei-Hua Chen, Luís Pedro Coelho, Kang Ning
2020 J jnl
proGenomes2: an improved database for accurate and consistent habitat, taxonomic and functional annotations of prokaryotic genomes.
Nucleic Acids Res.
Daniel R. Mende, Ivica Letunic, Oleksandr M. Maistrenko, Thomas S. B. Schmidt, Alessio Milanese, Lucas Paoli, Ana Hernández-Plaza, Askarbek N. Orakov, Sofia K. Forslund, Shinichi Sunagawa, Georg Zeller, Jaime Huerta-Cepas, Luís Pedro Coelho, Peer Bork
2016 J jnl
MOCAT2: a metagenomic assembly, annotation and profiling framework.
Bioinform.
Jens Roat Kultima, Luís Pedro Coelho, Kristoffer Forslund, Jaime Huerta-Cepas, Simone S. Li, Marja Driessen, Anita Yvonne Voigt, Georg Zeller, Shinichi Sunagawa, Peer Bork
2015 J jnl
Automatic determination of NET (neutrophil extracellular traps) coverage in fluorescent microscopy images.
Bioinform.
Luís Pedro Coelho, Catarina Pato, Ana Friães, Ariane Neumann, Maren von Köckritz-Blickwede, Mário Ramirez, João André Carriço
2013 J jnl
Determining the subcellular location of new proteins from microscope images using local features.
Bioinform.
Luís Pedro Coelho, Joshua D. Kangas, Armaghan W. Naik, Elvira Osuna-Highley, Estelle Glory-Afshar, Margaret Fuhrman, Ramanuja Simha, Peter B. Berget, Jonathan W. Jarvik, Robert F. Murphy
2012 J jnl
Mahotas: Open source software for scriptable computer vision
CoRR
Luís Pedro Coelho
2010 J jnl
Quantifying the distribution of probes between subcellular locations using unsupervised pattern unmixing.
Bioinform.
Luís Pedro Coelho, Tao Peng, Robert F. Murphy
2010 J jnl
Structured literature image finder: Parsing text and figures in biomedical literature.
J. Web Semant.
Amr Ahmed, Andrew Arnold, Luís Pedro Coelho, Joshua D. Kangas, Abdul-Saboor Sheikh, Eric P. Xing, William W. Cohen, Robert F. Murphy
2009 — conf
Nuclear Segmentation in Microscope Cell Images: A Hand-Segmented Dataset and Comparison of Algorithms.
ISBI
Luís Pedro Coelho, Aabid Shariff, Robert F. Murphy
2008 — conf
Identifying Subcellular Locations from Images of Unknown Resolution.
BIRD
Luís Pedro Coelho, Robert F. Murphy
2008 — conf
Principles of Bioimage Informatics: Focus on Machine Learning of Cell Patterns.
BioLINK@ISMB/ECCB
Luís Pedro Coelho, Estelle Glory-Afshar, Joshua D. Kangas, Shannon Quinn, Aabid Shariff, Robert F. Murphy
2008 — conf
Structured Literature Image Finder: Extracting Information from Text and Images in Biomedical Literature.
BioLINK@ISMB/ECCB
Luís Pedro Coelho, Amr Ahmed, Andrew Arnold, Joshua D. Kangas, Abdul-Saboor Sheikh, Eric P. Xing, William W. Cohen, Robert F. Murphy
2007 — conf
An Adaptive Multiresolution Approach to Fingerprint Recognition.
ICIP (1)
Amina Chebira, Luís Pedro Coelho, Aliaksei Sandryhaila, Stephen Lin, William G. Jenkinson, Jeremiah MacSleyne, Christopher Hoffman, Philipp Cuadra, Charles Jackson, Markus Püschel, Jelena Kovacevic
2006 C conf
Dotted Suffix Trees A Structure for Approximate Text Indexing.
SPIRE
Luís Pedro Coelho, Arlindo L. Oliveira