Luke V. Rasmussen

82 papers Misc 37Journal 37Unranked 8

Year	Rank	Type	Title / Venue / Authors
2026	J	`jnl`	PhenoFit: a framework for determining computable phenotyping algorithm fitness for purpose and reuse. J. Am. Medical Informatics Assoc. Laura K. Wiley, Luke V. Rasmussen, Rebecca T. Levinson, Jennnifer Malinowski, Sheila Manemann, Melissa P. Wilson, Martin Chapman, Jennifer A. Pacheco, Theresa L. Walunas, Justin B. Starren, Suzette J. Bielinski, Rachel L. Richesson
2026	J	`jnl`	Ten quick tips for using the NIH Comparative Genomics Resource. PLoS Comput. Biol. Eric S. Tvedte, Cecilia Arighi, Matthew B. Carson, Luke V. Rasmussen, Kristi L. Holmes, Terence D. Murphy
2025	J	`jnl`	Large language models accurately identify immunosuppression in intensive care unit patients. J. Am. Medical Informatics Assoc. Vijeeth Guggilla, Mengjia Kang, Melissa J. Bak, Steven D. Tran, Anna Pawlowski, Prasanth Nannapaneni, Luke V. Rasmussen, Daniel Schneider, Helen K. Donnelly, Ankit Agrawal, David M. Liebovitz, Alexander V. Misharin, G. R. Scott Budinger, Richard G. Wunderink, Theresa L. Walunas, Catherine A. Gao, Alan R. Hauser, Alec Peltekian, Alexis Rose Wolfe, Alison L. Szabo, Alok N. Choudhary, Amy Ludwig, Anahid Amani Moghadam, Anjana V. Yeldandi, Ankit Bharat, Anna E. Pawlowski, Anthony M. Joudi, Arjun Prakash Tambe, Ashley J. Smith-Nunez, Benjamin D. Singer, Benjamin J. Ulrich, Betty Tran, Cara J. Gottardi, Chao Qi, Chiagozie O. Pickens, Clara J. Schroedl, Daniel Meza, Dulce Sarai Garcia, Egon A. Ozer, Elen Gusman, Elisheva D. Shanes, Emily Mower Provost, Emily M. Olson, Erica Marie Hartmann, Erin A. Korth, Estefani Diaz, Estefany R. Guzman, Francisco J. Martinez, Gabrielle Matias, Hiam Abdala-Valencia, Jack T. Sumner, Jacob I Sznajder, Jacqueline M. Kruser, Jakub Glowala, James M. Walter, Jamie H. Rowell, Jason M. Arnold, John Coleman, Jon W. Lomasney, Joseph Isaac Bailey, Judd Hultquist, Justin A. Fiala, Justin Starren, Karen M. Ridge, Karolina Senkow, Kathryn A. Helmin, Khalilah L. Gates, Lacy Simmons, Lesley Pinzon, Lindsey D. Gradone, Lisa F. Wolfe, Lucy Luo, Luisa Morales-Nebreda, Manu Jain, Marc Sala, Maxwell Schleck, Melissa H. Ross, Melissa Querrey, Michael J. Cuttica, Michelle Hinsch Prickett, Nandita R. Nadig, Nathaniel Rhodes, Navdeep S. Chandel, Nikolay S. Markov, Peter H. S. Sporn, Qianli Liu, Rachel B. Kadar, Rachel L. Medernach, Ramon Lorenzo-Redondo, Ravi Kalhan, Rebecca K. Clepp, Richard I. Morimoto, Rogan A. Grant, Ruben J. Mylvaganam, Samuel Fenske, Scott A. Laurenzo, Sean Smith, Seung Hye Han, Sophia Nozick, Srinivas Panchamukhi, Stephanie C. Eisenbarth, Suchitra Swaminathan, Susan R. Russell, Taylor A. Poor, Thaddeus Cybulski, Theresa A. Lombardo, Thomas Bolig, Thomas Stoeger, Tien Doan, Timothy Rowe, Wan-Ting Liao, Yuan Luo, Yuliana Sokolenko, Zhan Yu, Ziyan Lu
2024	J	`jnl`	Seamless Integration of Computer-Adaptive Patient Reported Outcomes into an Electronic Health Record. Appl. Clin. Inform. Kyle Nolla, Luke V. Rasmussen, Nan E. Rothrock, Zeeshan Butt, Michael Bass, Kristina Davis, David Cella, Richard Gershon, Cynthia Barnard, Ryan Chmiel, Federico Almaraz, Michael J. Schachter, Therese A. Nelson, Michelle Langer, Justin Starren
2023	J	`jnl`	AD-BERT: Using pre-trained language model to predict the progression from mild cognitive impairment to Alzheimer's disease. J. Biomed. Informatics Chengsheng Mao, Jie Xu, Luke V. Rasmussen, Yikuan Li, Prakash Adekkanattu, Jennifer A. Pacheco, Borna Bonakdarpour, Robert Vassar, Li Shen, Guoqian Jiang, Fei Wang, Jyotishman Pathak, Yuan Luo
2023	J	`jnl`	Characterizing variability of electronic health record-driven phenotype definitions. J. Am. Medical Informatics Assoc. Pascal S. Brandt, Abel N. Kho, Yuan Luo, Jennifer A. Pacheco, Theresa L. Walunas, Hakon Hakonarson, George Hripcsak, Cong Liu, Ning Shang, Chunhua Weng, Nephi Walton, David S. Carrell, Paul K. Crane, Eric B. Larson, Christopher G. Chute, Iftikhar J. Kullo, Robert J. Carroll, Joshua C. Denny, Andrea H. Ramirez, Wei-Qi Wei, Jyotishman Pathak, Laura K. Wiley, Rachel L. Richesson, Justin B. Starren, Luke V. Rasmussen
2022	J	`jnl`	AD-BERT: Using Pre-trained contextualized embeddings to Predict the Progression from Mild Cognitive Impairment to Alzheimer's Disease. CoRR Chengsheng Mao, Jie Xu, Luke V. Rasmussen, Yikuan Li, Prakash Adekkanattu, Jennifer A. Pacheco, Borna Bonakdarpour, Robert Vassar, Guoqian Jiang, Fei Wang, Jyotishman Pathak, Yuan Luo
2022	J	`jnl`	Design and validation of a FHIR-based EHR-driven phenotyping toolbox. J. Am. Medical Informatics Assoc. Pascal S. Brandt, Jennifer A. Pacheco, Prakash Adekkanattu, Evan Sholle, Sajjad Abedian, Daniel J. Stone, David Knaack, Jie Xu, Zhenxing Xu, Yifan Peng, Natalie C. Benda, Fei Wang, Yuan Luo, Guoqian Jiang, Jyotishman Pathak, Luke V. Rasmussen
2022	J	`jnl`	Under-specification as the source of ambiguity and vagueness in narrative phenotype algorithm definitions. BMC Medical Informatics Decis. Mak. Jingzhi Yu, Jennifer A. Pacheco, Anika S. Ghosh, Yuan Luo, Chunhua Weng, Ning Shang, Barbara Benoit, David S. Carrell, Robert J. Carroll, Ozan Dikilitas, Robert R. Freimuth, Vivian S. Gainer, Hakon Hakonarson, George Hripcsak, Iftikhar J. Kullo, Frank D. Mentch, Shawn N. Murphy, Peggy L. Peissig, Andrea H. Ramirez, Nephi Walton, Wei-Qi Wei, Luke V. Rasmussen
2021	Misc	`conf`	A Deep Learning Framework Using a Pre-trained BERT Model to Predict the Risk of Progression from Mild Cognitive Impairment to Alzheimer's Disease. AMIA Chengsheng Mao, Jie Xu, Luke V. Rasmussen, Jennifer A. Pacheco, Guoqian Jiang, Fei Wang, Richard Isaacson, Jyotishman Pathak, Yuan Luo
2021	Misc	`conf`	Evaluation of the Portability of Natural Language Processing-based Computable Phenotypes in the eMERGE Network. AMIA Jennifer A. Pacheco, Luke V. Rasmussen, Ken Wiley, Thomas N. Person, David J. Cronkite, Sunghwan Sohn, Shawn N. Murphy, Justin H. Gundelach, Vivian S. Gainer, Victor M. Castro, Cong Liu, Todd Lingren, Frank D. Mentch, Agnes S. Sundaresan, Garrett Eickelberg, Valerie Willis, Al'ona Furmanchuk, Roshan Patel, David S. Carrell, Marc S. Williams, Elizabeth W. Karlson, Jodell E. Linder, Yuan Luo, Chunhua Weng, Wei-Qi Wei
2021	Misc	`conf`	FHIRTime: Standardizing Temporal Patterns Identified from Clinical Narratives Using HL7 FHIR. AMIA Daniel J. Stone, Sijia Liu, Yuan Luo, Andrew Wen, Nansu Zong, Luke V. Rasmussen, Prakash Adekkanattu, Pascal S. Brandt, Jennifer A. Pacheco, Fei Wang, Cui Tao, Jyotishman Pathak, Hongfang Liu, Guoqian Jiang
2021	J	`jnl`	Genomic considerations for FHIR®; eMERGE implementation lessons. J. Biomed. Informatics Mullai Murugan, Lawrence J. Babb, Casey Overby Taylor, Luke V. Rasmussen, Robert R. Freimuth, Eric Venner, Fei Yan, Victoria Yi, Stephen J. Granite, Hana Zouk, Samuel J. Aronson, Kevin Power, Alexander Fedotov, David R. Crosslin, David Fasel, Gail P. Jarvik, Hakon Hakonarson, Hana Bangash, Iftikhar J. Kullo, John J. Connolly, Jordan G. Nestor, Pedro J. Caraballo, Wei-Qi Wei, Ken Wiley, Heidi L. Rehm, Richard A. Gibbs
2021	Misc	`conf`	Impact of Sex and Gender Disparities on Computational Phenotyping: A Potential Barrier to an Equitable Learning Health System. AMIA Rebecca T. Levinson, Jennifer R. Malinowski, Luke V. Rasmussen, Suzette J. Bielinski, Véronique L. Roger, Quinn Stanton Wells, Laura K. Wiley
2021	J	`jnl`	Infobuttons for Genomic Medicine: Requirements and Barriers. Appl. Clin. Inform. Luke V. Rasmussen, John J. Connolly, Guilherme Del Fiol, Robert R. Freimuth, Douglas B. Pet, Josh F. Peterson, Brian H. Shirts, Justin B. Starren, Marc S. Williams, Nephi Walton, Casey Overby Taylor
2021	Misc	`conf`	Multi-site Evaluation of Longitudinal Changes in Ejection Fraction in Heart Failure Patients Through Data-driven Phenotyping. AMIA Prakash Adekkanattu, Jennifer A. Pacheco, Joseph Kabariti, Daniel J. Stone, Yue Yu, Parag Goyal, Faraz S. Ahmad, Guoqian Jiang, Yuan Luo, Luke V. Rasmussen, Pascal S. Brandt, Zhenxing Xu, Jie Xu, Fei Wang, Natalie C. Benda, Thomas R. Campion Jr., Jyotishman Pathak
2021	Misc	`conf`	On Constraints and Considerations for Extending Support for Natural Language Processing-Based FHIR Resource Generation. AMIA Andrew Wen, Luke V. Rasmussen, Daniel J. Stone, Sijia Liu, Prakash Adekkanattu, Pascal S. Brandt, Jennifer A. Pacheco, Yuan Luo, Fei Wang, Jyotishman Pathak, Hongfang Liu, Guoqian Jiang
2021	Misc	`conf`	Supporting EHR-based Cohort Discovery Through User-centered Design: Results of an Early Formative Usability Study. AMIA Natalie C. Benda, Pascal S. Brandt, Jessica S. Ancker, Jennifer A. Pacheco, Prakash Adekkanattu, Guoqian Jiang, Jyotishman Pathak, Luke V. Rasmussen
2020	J	`jnl`	Design Principles Developed through User-Centered and Socio-Technical Methods Improve Clinician Satisfaction, Speed, and Confidence in Pharmacogenomic Clinical Decision Support. CoRR Timothy M. Herr, Therese A. Nelson, Luke V. Rasmussen, Yinan Zheng, Nicola Lancki, Justin B. Starren
2020	Misc	`conf`	Feasibility of Cross-Platform EHR-Driven Phenotyping Using Clinical Quality Language. AMIA Pascal S. Brandt, Richard C. Kiefer, Jennifer A. Pacheco, Prakash Adekkanattu, Evan Sholle, Faraz S. Ahmad, Jie Xu, Zhenxing Xu, Jessica S. Ancker, Fei Wang, Yuan Luo, Guoqian Jiang, Jyotishman Pathak, Luke V. Rasmussen
2020	Misc	`conf`	Identification of Alzheimer's Disease Subtypes from Electronic Health Records Using a Data-Driven Approach. AMIA Jie Xu, Fei Wang, Zhenxing Xu, Prakash Adekkanattu, Pascal S. Brandt, Guoqian Jiang, Richard C. Kiefer, Yuan Luo, Chengsheng Mao, Jennifer A. Pacheco, Luke V. Rasmussen, Yiye Zhang, Richard Isaacson, Jyotishman Pathak
2020	J	`jnl`	Identifying sub-phenotypes of acute kidney injury using structured and unstructured electronic health record data with memory networks. J. Biomed. Informatics Zhenxing Xu, Jingyuan Chou, Xi Sheryl Zhang, Yuan Luo, Tamara Isakova, Prakash Adekkanattu, Jessica S. Ancker, Guoqian Jiang, Richard C. Kiefer, Jennifer A. Pacheco, Luke V. Rasmussen, Jyotishman Pathak, Fei Wang
2019	J	`jnl`	An ancillary genomics system to support the return of pharmacogenomic results. J. Am. Medical Informatics Assoc. Luke V. Rasmussen, Maureen E. Smith, Federico Almaraz, Stephen D. Persell, Laura J. Rasmussen-Torvik, Jennifer A. Pacheco, Rex L. Chisholm, Carl Christensen, Timothy M. Herr, Firas H. Wehbe, Justin B. Starren
2019	Misc	`conf`	Considerations for Improving the Portability of Electronic Health Record-Based Phenotype Algorithms. AMIA Luke V. Rasmussen, Pascal S. Brandt, Guoqian Jiang, Richard C. Kiefer, Jennifer A. Pacheco, Prakash Adekkanattu, Jessica S. Ancker, Fei Wang, Zhenxing Xu, Jyotishman Pathak, Yuan Luo
2019	J	`jnl`	Developing a FHIR-based EHR phenotyping framework: A case study for identification of patients with obesity and multiple comorbidities from discharge summaries. J. Biomed. Informatics Na Hong, Andrew Wen, Daniel J. Stone, Shintaro Tsuji, Paul R. Kingsbury, Luke V. Rasmussen, Jennifer A. Pacheco, Prakash Adekkanattu, Fei Wang, Yuan Luo, Jyotishman Pathak, Hongfang Liu, Guoqian Jiang
2019	J	`jnl`	Developing a portable natural language processing based phenotyping system. BMC Medical Informatics Decis. Mak. Himanshu Sharma, Chengsheng Mao, Yizhen Zhang, Haleh Vatani, Liang Yao, Yizhen Zhong, Luke V. Rasmussen, Guoqian Jiang, Jyotishman Pathak, Yuan Luo
2019	Misc	`conf`	Development of a Genomic Data Flow Framework: Results of a Survey Administered to NIH-NHGRI IGNITE and eMERGE Consortia Participants. AMIA Paul Richard Dexter, Henry H. Ong, Amanda Elsey, Gillian Bell, Nephi Walton, Wendy K. Chung, Luke V. Rasmussen, J. Kevin Hicks, Aniwaa Owusu-obeng, Stuart A. Scott, Stephen B. Ellis, Josh F. Peterson
2019	Misc	`conf`	Evaluating the Portability of an NLP System for Processing Echocardiograms: A Retrospective, Multi-site Observational Study. AMIA Prakash Adekkanattu, Guoqian Jiang, Yuan Luo, Paul R. Kingsbury, Zhenxing Xu, Luke V. Rasmussen, Jennifer A. Pacheco, Richard C. Kiefer, Daniel J. Stone, Pascal S. Brandt, Liang Yao, Yizhen Zhong, Yu Deng, Fei Wang, Jessica S. Ancker, Thomas R. Campion Jr., Jyotishman Pathak
2019	J	`jnl`	Evaluating the Portability of an NLP System for Processing Echocardiograms: A Retrospective, Multi-site Observational Study. CoRR Prakash Adekkanattu, Guoqian Jiang, Yuan Luo, Paul R. Kingsbury, Zhenxing Xu, Luke V. Rasmussen, Jennifer A. Pacheco, Richard C. Kiefer, Daniel J. Stone, Pascal S. Brandt, Liang Yao, Yizhen Zhong, Yu Deng, Fei Wang, Jessica S. Ancker, Thomas R. Campion Jr., Jyotishman Pathak
2019	J	`jnl`	Facilitating phenotype transfer using a common data model. J. Biomed. Informatics George Hripcsak, Ning Shang, Peggy L. Peissig, Luke V. Rasmussen, Cong Liu, Barbara Benoit, Robert J. Carroll, David S. Carrell, Joshua C. Denny, Ozan Dikilitas, Vivian S. Gainer, Kayla Marie Howell, Jeffrey G. Klann, Iftikhar J. Kullo, Todd Lingren, Frank D. Mentch, Shawn N. Murphy, Karthik Natarajan, Chunhua Weng
2019	J	`jnl`	Identification of Predictive Sub-Phenotypes of Acute Kidney Injury using Structured and Unstructured Electronic Health Record Data with Memory Networks. CoRR Zhenxing Xu, Jingyuan Chou, Xi Sheryl Zhang, Yuan Luo, Tamara Isakova, Prakash Adekkanattu, Jessica S. Ancker, Guoqian Jiang, Richard C. Kiefer, Jennifer A. Pacheco, Luke V. Rasmussen, Jyotishman Pathak, Fei Wang
2019	J	`jnl`	Making work visible for electronic phenotype implementation: Lessons learned from the eMERGE network. J. Biomed. Informatics Ning Shang, Cong Liu, Luke V. Rasmussen, Casey N. Ta, Robert J. Carroll, Barbara Benoit, Todd Lingren, Ozan Dikilitas, Frank D. Mentch, David S. Carrell, Wei-Qi Wei, Yuan Luo, Vivian S. Gainer, Iftikhar J. Kullo, Jennifer A. Pacheco, Hakon Hakonarson, Theresa L. Walunas, Joshua C. Denny, Chunhua Weng
2019	J	`jnl`	Pharmacogenomic clinical decision support design and multi-site process outcomes analysis in the eMERGE Network. J. Am. Medical Informatics Assoc. Timothy M. Herr, Josh F. Peterson, Luke V. Rasmussen, Pedro J. Caraballo, Peggy L. Peissig, Justin B. Starren
2019	—	`conf`	Stratified Mortality Prediction of Patients with Acute Kidney Injury in Critical Care. MedInfo Zhenxing Xu, Yuan Luo, Prakash Adekkanattu, Jessica S. Ancker, Guoqian Jiang, Richard C. Kiefer, Jennifer A. Pacheco, Luke V. Rasmussen, Jyotishman Pathak, Fei Wang
2018	J	`jnl`	A case study evaluating the portability of an executable computable phenotype algorithm across multiple institutions and electronic health record environments. J. Am. Medical Informatics Assoc. Jennifer A. Pacheco, Luke V. Rasmussen, Richard C. Kiefer, Thomas R. Campion Jr., Peter Speltz, Robert J. Carroll, Sarah C. Stallings, Huan Mo, Monika Ahuja, Guoqian Jiang, Eric R. LaRose, Peggy L. Peissig, Ning Shang, Barbara Benoit, Vivian S. Gainer, Kenneth Borthwick, Kathryn L. Jackson, Ambrish Sharma, Andy Yizhou Wu, Abel N. Kho, Dan M. Roden, Jyotishman Pathak, Joshua C. Denny, William K. Thompson
2018	—	`conf`	Characterizing Design Patterns of EHR-Driven Phenotype Extraction Algorithms. BIBM Yizhen Zhong, Luke V. Rasmussen, Yu Deng, Jennifer A. Pacheco, Maureen E. Smith, Justin Starren, Wei-Qi Wei, Peter Speltz, Joshua C. Denny, Nephi Walton, George Hripcsak, Christopher G. Chute, Yuan Luo
2018	J	`jnl`	Characterizing Design Patterns of EHR-Driven Phenotype Extraction Algorithms. CoRR Yizhen Zhong, Luke V. Rasmussen, Yu Deng, Jennifer A. Pacheco, Maureen E. Smith, Justin Starren, Wei-Qi Wei, Peter Speltz, Joshua C. Denny, Nephi Walton, George Hripcsak, Christopher G. Chute, Yuan Luo
2018	J	`jnl`	Developing a Portable Natural Language Processing Based Phenotyping System. CoRR Himanshu Sharma, Chengsheng Mao, Yizhen Zhang, Haleh Vatani, Liang Yao, Yizhen Zhong, Luke V. Rasmussen, Guoqian Jiang, Jyotishman Pathak, Yuan Luo
2018	J	`jnl`	Empowering genomic medicine by establishing critical sequencing result data flows: the eMERGE example. J. Am. Medical Informatics Assoc. Samuel J. Aronson, Lawrence J. Babb, Darren C. Ames, Richard A. Gibbs, Eric Venner, John J. Connelly, Keith Marsolo, Chunhua Weng, Marc S. Williams, Andrea L. Hartzler, Wayne H. Liang, James D. Ralston, Emily Beth Devine, Shawn N. Murphy, Christopher G. Chute, Pedro J. Caraballo, Iftikhar J. Kullo, Robert R. Freimuth, Luke V. Rasmussen, Firas H. Wehbe, Josh F. Peterson, Jamie R. Robinson, Ken Wiley, Casey Overby Taylor, eMERGE Network EHRI Working Group
2018	—	`conf`	Portable Phenotyping System: A Portable Machine-Learning Approach to i2b2 Obesity Challenge. ICHI Workshops Himanshu Sharma, Chengsheng Mao, Yizhen Zhang, Haleh Vatani, Liang Yao, Yizhen Zhong, Luke V. Rasmussen, Guoqian Jiang, Jyotishman Pathak, Yuan Luo
2017	Misc	`conf`	Challenges impacting data collection from Electronic Health Record (EHR) Systems in Small and Medium sized practices in the Midwest. AMIA Pauline Kenly, Luke V. Rasmussen, Andrew Schriever, Faraz S. Ahmad, Kathryn L. Jackson, Richard Chagnon, Theresa L. Walunas, Abel N. Kho
2017	Misc	`conf`	Classifying Clinical Trial Eligibility Criteria to Facilitate Phased Cohort Identification Using Clinical Data Repositories. AMIA Amy Y. Wang, William J. Lancaster, Matthew C. Wyatt, Luke V. Rasmussen, Daniel Fort, James J. Cimino
2017	Misc	`conf`	Design and Implementation of a Structured Sequencing Report Format: A Multi-Stakeholder Perspective from eMERGE. AMIA Luke V. Rasmussen, Darren C. Ames, Samuel J. Aronson, Lawrence J. Babb, Casey L. Overby
2017	Misc	`conf`	DocUBuild: A Collaborative System to Enhance Dissemination and Discovery of Genomic Clinical Content. AMIA Luke V. Rasmussen, Casey L. Overby
2017	Misc	`conf`	Leveraging Value Sets from the Value Set Authority Center (VSAC) in a Standards-Based Clinical Data Repository. AMIA Richard C. Kiefer, Luke V. Rasmussen, Jennifer A. Pacheco, Peter Speltz, Joshua C. Denny, William K. Thompson, Jyotishman Pathak, Guoqian Jiang
2017	Misc	`conf`	The Phenotype Execution and Modeling Architecture: A Roadmap Towards Next-generation Phenotyping Using EHRs. AMIA Peter Speltz, Luke V. Rasmussen, Richard C. Kiefer, Jennifer A. Pacheco, William K. Thompson, Guoqian Jiang, Jyotishman Pathak, Joshua C. Denny
2017	Misc	`conf`	Use of the popHealth Open-Source Quality Measure Engine to Support Cardiovascular Care at Small- and Medium-Sized Practices. AMIA Luke V. Rasmussen, Andrew Schriever, Pauline Kenly, Dejan Jovanov, Stephen D. Persell, Theresa L. Walunas, Abel N. Kho
2016	—	`conf`	A Decompositional Approach to Executing Quality Data Model Algorithms on the i2b2 Platform. CRI Huan Mo, Guoqian Jiang, Jennifer A. Pacheco, Richard C. Kiefer, Luke V. Rasmussen, Jyotishman Pathak, Joshua C. Denny, William K. Thompson
2016	J	`jnl`	A multi-institution evaluation of clinical profile anonymization. J. Am. Medical Informatics Assoc. Raymond Heatherly, Luke V. Rasmussen, Peggy L. Peissig, Jennifer A. Pacheco, Paul A. Harris, Joshua C. Denny, Bradley A. Malin
2016	J	`jnl`	A multi-site cognitive task analysis for biomedical query mediation. Int. J. Medical Informatics Gregory William Hruby, Luke V. Rasmussen, David A. Hanauer, Vimla L. Patel, James J. Cimino, Chunhua Weng
2016	Misc	`conf`	An NLP Extension to the Quality Data Model for EHR-Driven Phenotype Algorithm Authoring and Execution. AMIA Guoqian Jiang, William K. Thompson, Luke V. Rasmussen, Richard C. Kiefer, Jennifer A. Pacheco, Huan Mo, Peter Speltz, Joshua C. Denny, Jyotishman Pathak
2016	Misc	`conf`	Automatic identification and extraction of design patterns of EHR-driven phenotyping algorithms. AMIA Yizhen Zhong, Luke V. Rasmussen, Justin Starren, Yuan Luo
2016	—	`conf`	Data Collection Methods to Support a Multi-State Practice Care Transformation Network. CRI Niloufar Safaeinili, Luke V. Rasmussen, Richard Chagnon, Jody D. Ciolino, Kathryn L. Jackson, Theresa L. Walunas, Abel N. Kho
2016	Misc	`conf`	Design and Implementation of an Ancillary Genomics System for the Return of Pharmacogenetic Results. AMIA Luke V. Rasmussen, Maureen E. Smith, Federico Almaraz, Stephen D. Persell, Laura Rasmussen-Torvik, Jennifer A. Pacheco, Carl Christensen, Timothy M. Herr, Firas H. Wehbe, Justin Starren
2016	J	`jnl`	Developing a data element repository to support EHR-driven phenotype algorithm authoring and execution. J. Biomed. Informatics Guoqian Jiang, Richard C. Kiefer, Luke V. Rasmussen, Harold R. Solbrig, Huan Mo, Jennifer A. Pacheco, Jie Xu, Enid N. H. Montague, William K. Thompson, Joshua C. Denny, Christopher G. Chute, Jyotishman Pathak
2016	Misc	`conf`	Implementing Pharmacogenomic Clinical Decision Support: Design and Prescriber Response in the eMERGE Network. AMIA Timothy M. Herr, Josh F. Peterson, Luke V. Rasmussen, Pedro J. Caraballo
2016	J	`jnl`	PheKB: a catalog and workflow for creating electronic phenotype algorithms for transportability. J. Am. Medical Informatics Assoc. Jacqueline Kirby, Peter Speltz, Luke V. Rasmussen, Melissa A. Basford, Omri Gottesman, Peggy L. Peissig, Jennifer A. Pacheco, Gerard Tromp, Jyotishman Pathak, David S. Carrell, Stephen B. Ellis, Todd Lingren, William K. Thompson, Guergana Savova, Jonathan L. Haines, Dan M. Roden, Paul A. Harris, Joshua C. Denny
2016	J	`jnl`	Practical considerations for implementing genomic information resources. Appl. Clin. Inform. Casey L. Overby, John J. Connolly, Christopher G. Chute, Joshua C. Denny, Robert R. Freimuth, Andrea L. Hartzler, Ingrid A. Holm, Shannon F. Manzi, Jyotishman Pathak, Peggy L. Peissig, Maureen E. Smith, Marc S. Williams, Brian H. Shirts, Elena M. Stoffel, Peter Tarczy-Hornoch, Carolyn Rohrer Vitek, Wendy A. Wolf, Justin Starren, Luke V. Rasmussen
2016	—	`conf`	Seamless Integration of Patient Reported Outcomes Assessments into the EHR Workflow. CRI Justin Starren, Christopher Bethman, Federico Almaraz, Ryan Chmiel, Michael Bass, Luke V. Rasmussen
2016	J	`jnl`	The genomic CDS sandbox: An assessment among domain experts. J. Biomed. Informatics Ayesha Aziz, Kensaku Kawamoto, Karen Eilbeck, Marc S. Williams, Robert R. Freimuth, Mark A. Hoffman, Luke V. Rasmussen, Casey Lynnette Overby, Brian H. Shirts, James M. Hoffman, Brandon M. Welch
2016	—	`conf`	Using Collaboration Networks to Visualize Patterns in Clinical Trial Recruitment. CRI Daniel Fort, Timothy M. Herr, Paul Friedman, Luke V. Rasmussen, Justin Starren
2015	—	`conf`	A Standards-based Semantic Metadata Repository to Support EHR-driven Phenotype Authoring and Execution. MedInfo Guoqian Jiang, Harold R. Solbrig, Richard C. Kiefer, Luke V. Rasmussen, Huan Mo, Peter Speltz, William K. Thompson, Joshua C. Denny, Christopher G. Chute, Jyotishman Pathak
2015	J	`jnl`	CSER and eMERGE: current and potential state of the display of genetic information in the electronic health record. J. Am. Medical Informatics Assoc. Brian H. Shirts, Joseph S. Salama, Samuel J. Aronson, Wendy K. Chung, Stacy W. Gray, Lucia A. Hindorff, Gail P. Jarvik, Sharon E. Plon, Elena M. Stoffel, Peter Tarczy-Hornoch, Eliezer M. Van Allen, Karen E. Weck, Christopher G. Chute, Robert R. Freimuth, Robert Grundmeier, Andrea L. Hartzler, Rongling Li, Peggy L. Peissig, Josh F. Peterson, Luke V. Rasmussen, Justin B. Starren, Marc S. Williams, Casey Lynnette Overby
2015	J	`jnl`	Desiderata for computable representations of electronic health records-driven phenotype algorithms. J. Am. Medical Informatics Assoc. Huan Mo, William K. Thompson, Luke V. Rasmussen, Jennifer A. Pacheco, Guoqian Jiang, Richard C. Kiefer, Qian Zhu, Jie Xu, Enid N. H. Montague, David S. Carrell, Todd Lingren, Frank D. Mentch, Yizhao Ni, Firas H. Wehbe, Peggy L. Peissig, Gerard Tromp, Eric B. Larson, Christopher G. Chute, Jyotishman Pathak, Joshua C. Denny, Peter Speltz, Abel N. Kho, Gail P. Jarvik, Cosmin Adrian Bejan, Marc S. Williams, Kenneth Borthwick, Terrie E. Kitchner, Dan M. Roden, Paul A. Harris
2015	Misc	`conf`	Harmonization of Quality Data Model with HL7 FHIR to Support EHR-driven Phenotype Authoring and Execution: A Pilot Study. AMIA Guoqian Jiang, Harold R. Solbrig, Richard C. Kiefer, Luke V. Rasmussen, Huan Mo, Jennifer A. Pacheco, Enid N. H. Montague, Jie Xu, Peter Speltz, William K. Thompson, Joshua C. Denny, Christopher G. Chute, Jyotishman Pathak
2015	Misc	`conf`	PhEMA: Phenotype Modeling, Sharing and Execution Architecture. AMIA Jyotishman Pathak, Joshua C. Denny, William K. Thompson, Luke V. Rasmussen
2015	J	`jnl`	Review and evaluation of electronic health records-driven phenotype algorithm authoring tools for clinical and translational research. J. Am. Medical Informatics Assoc. Jie Xu, Luke V. Rasmussen, Pamela L. Shaw, Guoqian Jiang, Richard C. Kiefer, Huan Mo, Jennifer A. Pacheco, Peter Speltz, Qian Zhu, Joshua C. Denny, Jyotishman Pathak, William K. Thompson, Enid N. H. Montague
2015	Misc	`conf`	Translating Electronic Clinical Quality Measures to Executable, Portable, and Customizable Workflows in KNIME. AMIA Huan Mo, Jennifer A. Pacheco, Richard C. Kiefer, Luke V. Rasmussen, Jyotishman Pathak, Joshua C. Denny, William K. Thompson
2015	Misc	`conf`	Usability of a phenotype builder prototype and lessons learned for the design of phenotyping tools. AMIA Enid N. H. Montague, Jie Xu, Luke V. Rasmussen, Joshua C. Denny, Guoqian Jiang, Richard C. Kiefer, Jennifer A. Pacheco, Peter Speltz, William K. Thompson, Jyotishman Pathak
2014	Misc	`conf`	A Template for Authoring and Adapting Genomic Medicine Content in the eMERGE Infobutton Project. AMIA Casey L. Overby, Luke V. Rasmussen, Andrea L. Hartzler, John J. Connolly, Josh F. Peterson, RoseMary Hedberg, Robert R. Freimuth, Brian H. Shirts, Joshua C. Denny, Eric B. Larson, Christopher G. Chute, Gail P. Jarvik, James D. Ralston, Alan R. Shuldiner, Iftikhar J. Kullo, Peter Tarczy-Hornoch, Marc S. Williams
2014	J	`jnl`	Design patterns for the development of electronic health record-driven phenotype extraction algorithms. J. Biomed. Informatics Luke V. Rasmussen, William K. Thompson, Jennifer A. Pacheco, Abel N. Kho, David Carrell, Jyotishman Pathak, Peggy L. Peissig, Gerard Tromp, Joshua C. Denny, Justin B. Starren
2014	Misc	`conf`	Evaluation of Existing Phenotype Authoring Tools for Clinical Research. AMIA Luke V. Rasmussen, Jie Xu, Ruijue Liu, Qian Zhu, Jennifer A. Pacheco, Jyotishman Pathak, William K. Thompson, Joshua C. Denny, Huan Mo, Richard C. Kiefer, Peter Speltz, Enid N. H. Montague
2014	Misc	`conf`	Qualitative evaluation of three phenotype information models to find methotrexate liver injury. AMIA Qian Zhu, Huan Mo, Luke V. Rasmussen, Andrew R. Post, Jennifer A. Pacheco, Jie Xu, Richard C. Kiefer, Peter Speltz, Enid N. H. Montague, William K. Thompson, Joshua C. Denny, Jyotishman Pathak
2014	Misc	`conf`	Reproducibility of Health Care Datasets. AMIA Daniel H. Schneider, Nathan D. Sisterson, Luke V. Rasmussen
2014	Misc	`conf`	What Is Asked in Clinical Data Request Forms? A Multi-site Thematic Analysis of Forms Towards Better Data Access Support. AMIA David A. Hanauer, Gregory William Hruby, Daniel Fort, Luke V. Rasmussen, Eneida A. Mendonça, Chunhua Weng
2012	Misc	`conf`	An Evaluation of the NQF Quality Data Model for Representing Electronic Health Record Driven Phenotyping Algorithms. AMIA William K. Thompson, Luke V. Rasmussen, Jennifer A. Pacheco, Peggy L. Peissig, Joshua C. Denny, Abel N. Kho, Aaron W. Miller, Jyotishman Pathak
2012	J	`jnl`	Development of an optical character recognition pipeline for handwritten form fields from an electronic health record. J. Am. Medical Informatics Assoc. Luke V. Rasmussen, Peggy L. Peissig, Catherine A. McCarty, Justin Starren
2012	Misc	`conf`	Grouping and Translating Value Sets. AMIA Garima Sharma, Emre Motan, Luke V. Rasmussen, Andrew Winter, Justin Starren
2012	J	`jnl`	Importance of multi-modal approaches to effectively identify cataract cases from electronic health records. J. Am. Medical Informatics Assoc. Peggy L. Peissig, Luke V. Rasmussen, Richard L. Berg, James G. Linneman, Catherine A. McCarty, Carol Waudby, Lin Chen, Joshua C. Denny, Russell A. Wilke, Jyotishman Pathak, David Carrell, Abel N. Kho, Justin B. Starren
2012	Misc	`conf`	Integrating Research Recruitment into a Clinical Patient Portal. AMIA Luke V. Rasmussen, David Were, Jeff Lunt, Steve Lee, Carl Christensen, Warren A. Kibbe, Justin Starren
2012	Misc	`conf`	Open Source Workflow Tools for Electronic Health Record Based Phenotyping Algorithms. AMIA William K. Thompson, Luke V. Rasmussen, Jennifer A. Pacheco, Anna Roberts, Arun Muthalagu, Abel N. Kho
2012	Misc	`conf`	Rethinking the "Honest Broker" in the Changing Face of Security and Privacy. AMIA Luke V. Rasmussen, Brian D. Athey, Andrew D. Boyd, Bradley A. Malin, Shawn N. Murphy