Lukas Käll

18 papers B 1C 1Journal 14Unranked 1
YearRankTypeTitle / Venue / Authors
2025 J jnl
ProHap Explorer: Visualizing Haplotypes in Proteogenomic Datasets.
IEEE Computer Graphics and Applications
Jakub Vasícek, Dafni Skiadopoulou, Ksenia Kuznetsova, Lukas Käll, Marc Vaudel, Stefan Bruckner
2025 J jnl
ProHap Explorer: Visualizing Haplotypes in Proteogenomic Datasets.
CoRR
Jakub Vasícek, Dafni Skiadopoulou, Ksenia Kuznetsova, Lukas Käll, Marc Vaudel, Stefan Bruckner
2024 J jnl
ECCB2024: The 23rd European Conference on Computational Biology.
Bioinform.
Anu Kukkonen-Macchi, Sampsa Hautaniemi, Katharina F. Heil, Merja Heinäniemi, Lars Juhl Jensen, Sini Junttila, Lukas Käll, Asta Laiho, Peter Maccallum, Matti Nykter, Bengt Persson, Tomi Suomi, Tim Van Den Bossche, Tommi H. Nyrönen, Laura L. Elo
2024 J jnl
Pathway analysis through mutual information.
Bioinform.
Gustavo S. Jeuken, Lukas Käll
2024 B conf
Semi-supervised Learning While Controlling the FDR with an Application to Tandem Mass Spectrometry Analysis.
RECOMB
Jack Freestone, Lukas Käll, William Stafford Noble, Uri Keich
2022 J jnl
Survival analysis of pathway activity as a prognostic determinant in breast cancer.
PLoS Comput. Biol.
Gustavo S. Jeuken, Nicholas P. Tobin, Lukas Käll
2021 J jnl
Parallelized calculation of permutation tests.
Bioinform.
Markus Ekvall, Michael Höhle, Lukas Käll
2019 J jnl
CoExpresso: assess the quantitative behavior of protein complexes in human cells.
BMC Bioinform.
Morteza Chalabi Hajkarim, Vasileios Tsiamis, Lukas Käll, Fabio Vandin, Veit Schwämmle
2017 J jnl
Uncertainty estimation of predictions of peptides' chromatographic retention times in shotgun proteomics.
Bioinform.
Heydar Maboudi Afkham, Xuanbin Qiu, Matthew The, Lukas Käll
2015 J jnl
The TOPCONS web server for consensus prediction of membrane protein topology and signal peptides.
Nucleic Acids Res.
Konstantinos D. Tsirigos, Christoph Peters, Nanjiang Shu, Lukas Käll, Arne Elofsson
2014 — ed.
Pattern Recognition in Bioinformatics - 9th IAPR International Conference, PRIB 2014, Stockholm, Sweden, August 21-23, 2014. Proceedings
PRIB
Matteo Comin, Lukas Käll, Elena Marchiori, Alioune Ngom, Jagath C. Rajapakse
2012 J jnl
A cross-validation scheme for machine learning algorithms in shotgun proteomics.
BMC Bioinform.
Viktor Granholm, William Stafford Noble, Lukas Käll
2011 J jnl
Computational Mass Spectrometry-Based Proteomics.
PLoS Comput. Biol.
Lukas Käll, Olga Vitek
2009 J jnl
QVALITY: non-parametric estimation of
Bioinform.
Lukas Käll, John D. Storey, William Stafford Noble
2008 C conf
Non-parametric estimation of posterior error probabilities associated with peptides identified by tandem mass spectrometry.
ECCB
Lukas Käll, John D. Storey, William Stafford Noble
2008 J jnl
Transmembrane Topology and Signal Peptide Prediction Using Dynamic Bayesian Networks.
PLoS Comput. Biol.
Sheila M. Reynolds, Lukas Käll, Michael Riffle, Jeff A. Bilmes, William Stafford Noble
2007 J jnl
Advantages of combined transmembrane topology and signal peptide prediction - the Phobius web server.
Nucleic Acids Res.
Lukas Käll, Anders Krogh, Erik L. L. Sonnhammer
2005 — conf
An HMM posterior decoder for sequence feature prediction that includes homology information.
ISMB (Supplement of Bioinformatics)
Lukas Käll, Anders Krogh, Erik L. L. Sonnhammer