Luiz M. R. Gadelha Jr.

32 papers B 4Journal 17Unranked 11

Year	Rank	Type	Title / Venue / Authors
2025	J	`jnl`	Evaluating the method reproducibility of deep learning models in biodiversity research. PeerJ Comput. Sci. Waqas Ahmed, Vamsi Krishna Kommineni, Birgitta König-Ries, Jitendra Gaikwad, Luiz M. R. Gadelha Jr., Sheeba Samuel
2024	J	`jnl`	Evaluating the method reproducibility of deep learning models in the biodiversity domain. CoRR Waqas Ahmed, Vamsi Krishna Kommineni, Birgitta König-Ries, Jitendra Gaikwad, Luiz M. R. Gadelha Jr., Sheeba Samuel
2024	J	`jnl`	HIHISIV: a database of gene expression in HIV and SIV host immune response. BMC Bioinform. Raquel Lopes Costa, Luiz M. R. Gadelha Jr., Mirela D'arc, Marcelo Ribeiro-Alves, David L. Robertson, Jean-Marc Schwartz, Marcelo A. Soares, Fábio Porto
2023	J	`jnl`	MAW: the reproducible Metabolome Annotation Workflow for untargeted tandem mass spectrometry. J. Cheminformatics Mahnoor Zulfiqar, Luiz M. R. Gadelha Jr., Christoph Steinbeck, Maria Sorokina, Kristian Peters
2023	—	`conf`	The German Human Genome-Phenome Archive in an International Context: Toward a Federated Infrastructure for Managing and Analyzing Genomics and Health Data. CoRDI Luiz M. R. Gadelha Jr., Jan Eufinger
2022	J	`jnl`	Parallel Performance and I/O Profiling of HPC RNA-Seq Applications. Computación y Sistemas Lucas Cruz, Micaella Coelho, Marcelo Galheigo, André Ramos Carneiro, Diego Carvalho, Luiz M. R. Gadelha Jr., Francieli Zanon Boito, Philippe O. A. Navaux, Carla Osthoff, Kary A. C. S. Ocaña
2022	—	`conf`	ParslRNA-Seq: An Efficient and Scalable RNAseq Analysis Workflow for Studies of Differentiated Gene Expression. CARLA Kary A. C. S. Ocaña, Lucas Cruz, Micaella Coelho, Rafael Terra, Marcelo Galheigo, Andre Ramos Carneiro, Diego Carvalho, Luiz M. R. Gadelha Jr., Francieli Zanon Boito, Philippe O. A. Navaux, Carla Osthoff
2022	B	`conf`	Toward a Framework for Integrative, FAIR, and Reproducible Management of Data on the Dynamic Balance of Microbial Communities. e-Science Luiz M. R. Gadelha Jr., Martin Hohmuth, Mahnoor Zulfiqar, David Schöne, Sheeba Samuel, Maria Sorokina, Christoph Steinbeck, Birgitta König-Ries
2022	J	`jnl`	Toward a Framework for Integrative, FAIR, and Reproducible Management of Data on the Dynamic Balance of Microbial Communities. CoRR Luiz M. R. Gadelha Jr., Martin Hohmuth, Mahnoor Zulfiqar, David Schöne, Sheeba Samuel, Maria Sorokina, Christoph Steinbeck, Birgitta König-Ries
2021	J	`jnl`	A survey of biodiversity informatics: Concepts, practices, and challenges. WIREs Data Mining Knowl. Discov. Luiz M. R. Gadelha Jr., Pedro C. de Siracusa, Eduardo Couto Dalcin, Luís Alexandre Estevão da Silva, Douglas Adriano Augusto, Eduardo Krempser, Helen Michelle Affe, Raquel Lopes Costa, Maria Luiza Mondelli, Pedro Milet Meirelles, Fabiano L. Thompson, Marcia Chame, Artur Ziviani, Marinez Ferreira de Siqueira
2021	B	`conf`	Capturing and Semantically Describing Provenance to Tell the Story of R Scripts. e-Science Maria Luiza Mondelli, Sheeba Samuel, Birgitta König-Ries, Luiz M. R. Gadelha Jr.
2020	J	`jnl`	BioinfoPortal: A scientific gateway for integrating bioinformatics applications on the Brazilian national high-performance computing network. Future Gener. Comput. Syst. Kary A. C. S. Ocaña, Marcelo Galheigo, Carla Osthoff, Luiz M. R. Gadelha Jr., Fábio Porto, Antônio Tadeu A. Gomes, Daniel de Oliveira, Ana Tereza Ribeiro de Vasconcelos
2019	—	`conf`	Exploring Reproducibility and FAIR Principles in Data Science Using Ecological Niche Modeling as a Case Study. ER Workshops Maria Luiza Mondelli, A. Townsend Peterson, Luiz M. R. Gadelha Jr.
2019	J	`jnl`	Exploring Reproducibility and FAIR Principles in Data Science Using Ecological Niche Modeling as a Case Study. CoRR Maria Luiza Mondelli, A. Townsend Peterson, Luiz M. R. Gadelha Jr.
2019	J	`jnl`	O Que os Países escutam: Analisando a Rede de Gêneros Musicais ao Redor do Mundo. Braz. J. Inf. Syst. Maria Luiza Mondelli, Luiz M. R. Gadelha Jr., Artur Ziviani
2019	J	`jnl`	SISS-Geo: Leveraging Citizen Science to Monitor Wildlife Health Risks in Brazil. J. Heal. Informatics Res. Marcia Chame, Helio J. C. Barbosa, Luiz M. R. Gadelha Jr., Douglas Adriano Augusto, Eduardo Krempser, Livia Abdalla
2019	B	`conf`	Towards a Science Gateway for Bioinformatics: Experiences in the Brazilian System of High Performance Computing. CCGRID Kary Ann del Carmen Ocaña Gautherot, Marcelo Galheigo, Carla Osthoff, Luiz M. R. Gadelha Jr., Antônio Tadeu A. Gomes, Daniel de Oliveira, Fábio Porto, Ana Tereza Ribeiro de Vasconcelos
2018	J	`jnl`	A Survey of e-Biodiversity: Concepts, Practices, and Challenges. CoRR Luiz M. R. Gadelha Jr., Pedro C. de Siracusa, Artur Ziviani, Eduardo Couto Dalcin, Helen Michelle Affe, Marinez Ferreira de Siqueira, Luís Alexandre Estevão da Silva, Douglas Adriano Augusto, Eduardo Krempser, Marcia Chame, Raquel Lopes Costa, Pedro Milet Meirelles, Fabiano L. Thompson
2018	J	`jnl`	BioWorkbench: A High-Performance Framework for Managing and Analyzing Bioinformatics Experiments. CoRR Maria Luiza Mondelli, Thiago Magalhães, Guilherme Loss, Michael Wilde, Ian T. Foster, Marta Mattoso, Daniel S. Katz, Helio J. C. Barbosa, Ana Tereza Ribeiro de Vasconcelos, Kary A. C. S. Ocaña, Luiz M. R. Gadelha Jr.
2017	—	`conf`	Model-R: A Framework for Scalable and Reproducible Ecological Niche Modeling. CARLA Andrea Sánchez-Tapia, Marinez Ferreira de Siqueira, Rafael Oliveira Lima, Felipe Sodré M. Barros, Guilherme M. Gall, Luiz M. R. Gadelha Jr., Luís Alexandre Estevão da Silva, Carla Osthoff
2015	J	`jnl`	BaMBa: towards the integrated management of Brazilian marine environmental data. Database J. Biol. Databases Curation Pedro Milet Meirelles, Luiz M. R. Gadelha Jr., Ronaldo Bastos Francini-Filho, Rodrigo Leão de Moura, Gilberto Menezes Amado-Filho, Alex Cardoso Bastos, Rodolfo Pinheiro da Rocha Paranhos, Carlos Eduardo Rezende, Jean Swings, Eduardo Siegle, Nils Edvin Asp Neto, Sigrid Neumann Leitão, Ricardo Coutinho, Marta Mattoso, Paulo S. Salomon, Rogério A. B. Valle, Renato Crespo Pereira, Ricardo Henrique Kruger, Cristiane Thompson, Fabiano L. Thompson
2014	—	`conf`	Applying Provenance to Protect Attribution in Distributed Computational Scientific Experiments. IPAW Luiz M. R. Gadelha Jr., Marta Mattoso
2014	J	`jnl`	Conceptual View Representation of the Brazilian Information System on Antarctic Environmental Research. Data Sci. J. Rocío Zorrilla, Maira Poltosi, Luiz M. R. Gadelha Jr., Fábio Porto, Ana Maria de Carvalho Moura, A. Dalto, Helena P. Lavrado, Yocie Yoneshigue-Valentin, M. Tenório, E. Xavier
2013	—	`conf`	Provenance traces of the swift parallel scripting system. EDBT/ICDT Workshops Luiz M. R. Gadelha Jr., Michael Wilde, Marta Mattoso, Ian T. Foster
2012	J	`jnl`	MTCProv: a practical provenance query framework for many-task scientific computing. Distributed Parallel Databases Luiz M. R. Gadelha Jr., Michael Wilde, Marta Mattoso, Ian T. Foster
2011	—	`conf`	Provenance Query Patterns for Many-Task Scientific Computing. TaPP Luiz M. R. Gadelha Jr., Marta Mattoso, Michael Wilde, Ian T. Foster
2011	J	`jnl`	Provenance management in Swift. Future Gener. Comput. Syst. Luiz M. R. Gadelha Jr., Ben Clifford, Marta Mattoso, Michael Wilde, Ian T. Foster
2010	—	`conf`	Towards a Threat Model for Provenance in e-Science. IPAW Luiz M. R. Gadelha Jr., Marta Mattoso, Michael Wilde, Ian T. Foster
2008	B	`conf`	A Lightweight Middleware Monitor for Distributed Scientific Workflows. CCGRID Sérgio Manuel Serra da Cruz, Fabrício Nogueira da Silva, Luiz M. R. Gadelha Jr., Maria Cláudia Reis Cavalcanti, Maria Luiza Machado Campos, Marta Mattoso
2008	—	`conf`	Kairos: An Architecture for Securing Authorship and Temporal Information of Provenance Data in Grid-Enabled Workflow Management Systems. eScience Luiz M. R. Gadelha Jr., Marta Mattoso
2007	—	`conf`	On the management of grid credentials. MGC Luiz M. R. Gadelha Jr., Bruno Schulze
2001	—	`conf`	An Efficient Strategy for Word-Cycle Completion in Finitely Presented Groups. SCCC Luiz M. R. Gadelha Jr., Mauricio Ayala-Rincón