Ludwig Geistlinger

11 papers Journal 11
YearRankTypeTitle / Venue / Authors
2025 J jnl
Learning and teaching biological data science in the Bioconductor community.
PLoS Comput. Biol.
Jenny Drnevich, Frederick J. Tan, Fabricio Almeida-Silva, Robert Castelo, Aedín C. Culhane, Sean R. Davis, Maria A. Doyle, Ludwig Geistlinger, Andrew R. Ghazi, Susan P. Holmes, Leo Lahti, Alexandru Mahmoud, Kozo Nishida, Marcel Ramos, Kevin C. Rue-Albrecht, David J. H. Shih, Laurent Gatto, Charlotte Soneson
2023 J jnl
BioPlexR and BioPlexPy: integrated data products for the analysis of human protein interactions.
Bioinform.
Ludwig Geistlinger, Roger Vargas, Tyrone Lee, Joshua Pan, Edward L. Huttlin, Robert Gentleman
2023 J jnl
Curated single cell multimodal landmark datasets for R/Bioconductor.
PLoS Comput. Biol.
Kelly B. Eckenrode, Dario Righelli, Marcel Ramos, Ricard Argelaguet, Christophe Vanderaa, Ludwig Geistlinger, Aedín C. Culhane, Laurent Gatto, Vincent J. Carey, Martin Morgan, Davide Risso, Levi Waldron
2023 J jnl
RaggedExperiment: the missing link between genomic ranges and matrices in Bioconductor.
Bioinform.
Marcel Ramos, Martin Morgan, Ludwig Geistlinger, Vincent J. Carey, Levi Waldron
2021 J jnl
SIMON: Open-Source Knowledge Discovery Platform.
Patterns
Adriana Tomic, Ivan Tomic, Levi Waldron, Ludwig Geistlinger, Max Kuhn, Rachel L. Spreng, Lindsay C. Dahora, Kelly E. Seaton, Georgia D. Tomaras, Jennifer Hill, Niharika A. Duggal, Ross D. Pollock, Norman R. Lazarus, Stephen D. R. Harridge, Janet M. Lord, Purvesh Khatri, Andrew J. Pollard, Mark M. Davis
2021 J jnl
Toward a gold standard for benchmarking gene set enrichment analysis.
Briefings Bioinform.
Ludwig Geistlinger, Gergely Csaba, Mara Santarelli, Marcel Ramos, Lucas Schiffer, Nitesh Turaga, Charity W. Law, Sean Davis, Vincent J. Carey, Martin Morgan, Ralf Zimmer, Levi Waldron
2020 J jnl
CNVRanger: association analysis of CNVs with gene expression and quantitative phenotypes.
Bioinform.
Vinícius da Silva, Marcel Ramos, Martien Groenen, Richard Crooijmans, Anna Johansson, Luciana C. A. Regitano, Luiz Coutinho, Ralf Zimmer, Levi Waldron, Ludwig Geistlinger
2018 J jnl
Orchestrating a community-developed computational workshop and accompanying training materials.
F1000Research
Sean Davis, Marcel Ramos, Lori A. Shepherd, Nitesh Turaga, Ludwig Geistlinger, Martin T. Morgan, Benjamin Haibe-Kains, Levi Waldron
2016 J jnl
Bioconductor's EnrichmentBrowser: seamless navigation through combined results of set- & network-based enrichment analysis.
BMC Bioinform.
Ludwig Geistlinger, Gergely Csaba, Ralf Zimmer
2015 J jnl
Addressing false discoveries in network inference.
Bioinform.
Tobias Petri, Stefan Altmann, Ludwig Geistlinger, Ralf Zimmer, Robert Küffner
2011 J jnl
From sets to graphs: towards a realistic enrichment analysis of transcriptomic systems.
Bioinform.
Ludwig Geistlinger, Gergely Csaba, Robert Küffner, Nicola J. Mulder, Ralf Zimmer