Lucila Ohno-Machado

326 papers A* 1A 1B 2C 2Misc 96Journal 204Unranked 18

Year	Rank	Type	Title / Venue / Authors
2026	J	`jnl`	A Federated and Parameter-Efficient Framework for Large Language Model Training in Medicine. CoRR Anran Li, Yuanyuan Chen, Wenjun Long, Yu Yin, Yan Hu, Hyunjae Kim, Weipeng Zhou, Yujia Zhou, Hongyi Peng, Yang Ren, Xuguang Ai, Zhenyue Qin, Ming Hu, Xiaoxiao Li, Han Yu, Yih-Chung Tham, Lucila Ohno-Machado, Hua Xu, Qingyu Chen
2026	J	`jnl`	We Need Granular Sharing of De-Identified Data-But Will Patients Engage? Investigating Health System Leaders' and Patients' Perspectives on A Patient-Controlled Data-Sharing Platform. CoRR Xi Lu, Di Hu, An T. Nguyen, Brad Morse, Lisa M. Schilling, Kai Zheng, Michelle S. Keller, Lucila Ohno-Machado, Yunan Chen
2025	J	`jnl`	A machine learning framework to adjust for learning effects in medical device safety evaluation. J. Am. Medical Informatics Assoc. Jejo D. Koola, Karthik Ramesh, Jialin Mao, Minyoung Ahn, Sharon E. Davis, Usha Govindarajulu, Amy Perkins, Dax M. Westerman, Henry Ssemaganda, Theodore Speroff, Lucila Ohno-Machado, Craig Ramsay, Art Sedrakyan, Frederic S. Resnic, Michael E. Matheny
2025	J	`jnl`	ByzSFL: Achieving Byzantine-Robust Secure Federated Learning with Zero-Knowledge Proofs. CoRR Yongming Fan, Rui Zhu, Zihao Wang, Chenghong Wang, Haixu Tang, Ye Dong, Hyunghoon Cho, Lucila Ohno-Machado
2025	J	`jnl`	Enhancing Patient-Centric Communication: Leveraging LLMs to Simulate Patient Perspectives. CoRR Xinyao Ma, Rui Zhu, Zihao Wang, Jingwei Xiong, Qingyu Chen, Haixu Tang, L. Jean Camp, Lucila Ohno-Machado
2025	J	`jnl`	Hey, That's My Data! Label-Only Dataset Inference in Large Language Models. CoRR Chen Xiong, Zihao Wang, Rui Zhu, Tsung-Yi Ho, Pin-Yu Chen, Jingwei Xiong, Haixu Tang, Lucila Ohno-Machado
2025	J	`jnl`	Medical foundation large language models for comprehensive text analysis and beyond. npj Digit. Medicine Qianqian Xie, Qingyu Chen, Aokun Chen, Cheng Peng, Yan Hu, Fongci Lin, Xueqing Peng, Jimin Huang, Jeffrey Zhang, Vipina Kuttichi Keloth, Xinyu Zhou, Lingfei Qian, Huan He, Dennis L. Shung, Lucila Ohno-Machado, Yonghui Wu, Hua Xu, Jiang Bian
2025	J	`jnl`	Memorization in Large Language Models in Medicine: Prevalence, Characteristics, and Implications. CoRR Anran Li, Lingfei Qian, Mengmeng Du, Yu Yin, Yan Hu, Zihao Sun, Yihang Fu, Erica Stutz, Xuguang Ai, Qianqian Xie, Rui Zhu, Jimin Huang, Yifan Yang, Siru Liu, Yih-Chung Tham, Lucila Ohno-Machado, Hyunghoon Cho, Zhiyong Lu, Hua Xu, Qingyu Chen
2025	J	`jnl`	Near-Lossless Model Compression Enables Longer Context Inference in DNA Large Language Models. CoRR Rui Zhu, Xiaopu Zhou, Haixu Tang, Stephen W. Scherer, Lucila Ohno-Machado
2025	J	`jnl`	Supporting Patients in Managing Electronic Health Records and Biospecimens Consent for Research: Insights from a Mixed-Methods Usability Evaluation of the iAGREE Portal. CoRR Di Hu, Xi Lu, Yunan Chen, Michelle Keller, An T. Nguyen, Vu Le, Tsung-Ting Kuo, Lucila Ohno-Machado, Kai Zheng
2024	J	`jnl`	A primer for quantum computing and its applications to healthcare and biomedical research. J. Am. Medical Informatics Assoc. Thomas J. S. Durant, Elizabeth Knight, Brent G. Nelson, Sarah Dudgeon, Seung J. Lee, Dominic Walliman, Hobart Patrick Young, Lucila Ohno-Machado, Wade L. Schulz
2024	J	`jnl`	Biomedical blockchain with practical implementations and quantitative evaluations: a systematic review. J. Am. Medical Informatics Assoc. Roger Lacson, Yufei Yu, Tsung-Ting Kuo, Lucila Ohno-Machado
2024	J	`jnl`	Language Enhanced Model for Eye (LEME): An Open-Source Ophthalmology-Specific Large Language Model. CoRR Aidan Gilson, Xuguang Ai, Qianqian Xie, Sahana Srinivasan, Krithi Pushpanathan, Maxwell B. Singer, Jimin Huang, Hyunjae Kim, Erping Long, Peixing Wan, Luciano V. Del Priore, Lucila Ohno-Machado, Hua Xu, Dianbo Liu, Ron A. Adelman, Yih-Chung Tham, Qingyu Chen
2024	J	`jnl`	Me LLaMA: Foundation Large Language Models for Medical Applications. CoRR Qianqian Xie, Qingyu Chen, Aokun Chen, Cheng Peng, Yan Hu, Fongci Lin, Xueqing Peng, Jimin Huang, Jeffrey Zhang, Vipina Kuttichi Keloth, Xingyu Zhou, Huan He, Lucila Ohno-Machado, Yonghui Wu, Hua Xu, Jiang Bian
2024	—	`conf`	Patient-Centered and Practical Privacy to Support AI for Healthcare. TPS-ISA Ruixuan Liu, Hong-Kyu Lee, Sivasubramanium V. Bhavani, Xiaoqian Jiang, Lucila Ohno-Machado, Li Xiong
2023	J	`jnl`	A hierarchical strategy to minimize privacy risk when linking "De-identified" data in biomedical research consortia. J. Biomed. Informatics Lucila Ohno-Machado, Xiaoqian Jiang, Tsung-Ting Kuo, Shiqiang Tao, Luyao Chen, Pritham Ram, Guo-Qiang Zhang, Hua Xu
2023	J	`jnl`	Blockchain-enabled immutable, distributed, and highly available clinical research activity logging system for federated COVID-19 data analysis from multiple institutions. J. Am. Medical Informatics Assoc. Tsung-Ting Kuo, Anh Pham, Maxim E. Edelson, Jihoon Kim, Jason Chan, Yash Gupta, Lucila Ohno-Machado, David M. Anderson, Chandrasekar Balacha, Tyler Bath, Sally L. Baxter, Andrea Becker-Pennrich, Douglas S. Bell, Elmer V. Bernstam, Ngan Chau, Michele E. Day, Jason N. Doctor, Scott L. DuVall, Robert El-Kareh, Renato Florian, Robert W. Follett, Benjamin P. Geisler, Alessandro Ghigi, Assaf Gottlieb, Ludwig Christian G. Hinske, Zhaoxian Hu, Diana Ir, Xiaoqian Jiang, Katherine K. Kim, Tara K. Knight, Jejo D. Koola, Nelson Lee, Ulrich Mansmann, Michael E. Matheny, Daniella Meeker, Zongyang Mou, Larissa Neumann, Nghia H. Nguyen, Nick Anderson, Eunice Park, Paulina Paul, Mark J. Pletcher, Kai W. Post, Clemens Rieder, Clemens Scherer, Lisa M. Schilling, Andrey Soares, Spencer L. SooHoo, Ekin Soysal, Steven Covington, Brian Tep, Brian Toy, Baocheng Wang, Zhen R. Wu, Hua Xu, Yong K. Choi, Kai Zheng, Yujia Zhou, Rachel A Zucker
2023	J	`jnl`	JAMIA at 30: looking back and forward. J. Am. Medical Informatics Assoc. William W. Stead, Randolph A. Miller, Lucila Ohno-Machado, Suzanne Bakken
2023	J	`jnl`	Patient and researcher stakeholder preferences for use of electronic health record data: a qualitative study to guide the design and development of a platform to honor patient preferences. J. Am. Medical Informatics Assoc. Brad Morse, Katherine K. Kim, Zixuan Xu, Cynthia G. Matsumoto, Lisa M. Schilling, Lucila Ohno-Machado, Selene S. Mak, Michelle S. Keller
2022	Misc	`conf`	A Framework for Detecting Medical Device Safety Signals Confounded by Learning Effects Using Machine Learning. AMIA Jejo D. Koola, Jialin Mao, Sharon E. Davis, Henry Ssemaganda, Dax M. Westerman, Lucila Ohno-Machado, Frederic S. Resnic, Michael E. Matheny
2022	Misc	`conf`	A Framework for Generating Synthetic Clinical Datasets with Learning Effects to Support Methods Development and Validation. AMIA Sharon E. Davis, Henry Ssemaganda, Jejo Koola, Jialin Mao, Dax M. Westerman, Theodore Speroff, Usha Govindarajulu, Craig Ramsay, Lucila Ohno-Machado, Frederic S. Resnic, Michael E. Matheny
2022	J	`jnl`	A research agenda to support the development and implementation of genomics-based clinical informatics tools and resources. J. Am. Medical Informatics Assoc. Ken Wiley, Laura Findley, Madison Goldrich, Tejinder K. Rakhra-Burris, Ana Stevens, Pamela Williams, Carol J. Bult, Rex L. Chisholm, Patricia Deverka, Geoffrey S. Ginsburg, Eric D. Green, Gail P. Jarvik, George A. Mensah, Erin Ramos, Mary V. Relling, Dan M. Roden, Robb Rowley, Gil Alterovitz, Samuel J. Aronson, Lisa Bastarache, James J. Cimino, Erin L. Crowgey, Guilherme Del Fiol, Robert R. Freimuth, Mark A. Hoffman, Janina M. Jeff, Kevin B. Johnson, Kensaku Kawamoto, Subha Madhavan, Eneida A. Mendonça, Lucila Ohno-Machado, Siddharth Pratap, Casey Overby Taylor, Marylyn D. Ritchie, Nephi Walton, Chunhua Weng, Teresa Zayas-Cabán, Teri A. Manolio, Marc S. Williams
2022	J	`jnl`	A tribute to Karen Greenwood and her contributions to the American Medical Informatics Association. J. Am. Medical Informatics Assoc. Christoph U. Lehmann, Patricia F. Brennan, Don E. Detmer, Gretchen P. Jackson, Lucila Ohno-Machado, Charles Safran, Jeffrey J. Williamson, Edward H. Shortliffe
2022	J	`jnl`	Codesigning a community-based participatory research project to assess tribal perspectives on privacy and health data sharing: A report from the Strong Heart Study. J. Am. Medical Informatics Assoc. Cynthia Triplett, Burgundy J. Fletcher, Riley Taitingfong, Ying Zhang, Tauqeer Ali, Lucila Ohno-Machado, Cinnamon S. Bloss
2022	Misc	`conf`	Disentangling and Characterizing Device Safety Signals and Learning Effects. AMIA Henry Ssemaganda, Frederic S. Resnic, Sharon E. Davis, Usha Govindarajulu, Jejo Koola, Jialin Mao, Dax M. Westerman, Theodore Speroff, Craig Ramsay, Art Sedrakyan, Lucila Ohno-Machado, Michael E. Matheny
2022	Misc	`conf`	Existing and emerging privacy challenges and solutions for federated data coordination. AMIA Tsung-Ting Kuo, Xiaoqian Jiang, Hua Xu, Li Xiong, Lucila Ohno-Machado
2022	—	`conf`	IMI-CDE: an interactive interface for collaborative mapping of study variables to common data elements. ICHI Shiqiang Tao, Wei-Chun Chou, Jianfu Li, Jingcheng Du, Pritham Ram, Rashmie Abeysinghe, Hua Xu, Xiaoqian Jiang, Peter W. Rose, Lucila Ohno-Machado, Guo-Qiang Zhang
2022	J	`jnl`	Inclusion of social determinants of health improves sepsis readmission prediction models. J. Am. Medical Informatics Assoc. Fatemeh Amrollahi, Supreeth Prajwal Shashikumar, Angela Meier, Lucila Ohno-Machado, Shamim Nemati, Gabriel Wardi
2022	J	`jnl`	NLM's sponsorship of research in biomedical informatics (1985-2016). Inf. Serv. Use Tsung-Ting Kuo, Lucila Ohno-Machado
2022	J	`jnl`	The Patterns Andrea H. Ramirez, Lina M. Sulieman, David J. Schlueter, Alese E. Halvorson, Jun Qian, Francis Ratsimbazafy, Roxana Loperena-Cortes, Kelsey R. Mayo, Melissa A. Basford, Nicole Deflaux, Karthik Muthuraman, Karthik Natarajan, Abel N. Kho, Hua Xu, Consuelo H. Wilkins, Hoda Anton-Culver, Eric Boerwinkle, Mine Cicek, Cheryl R. Clark, Elizabeth Cohn, Lucila Ohno-Machado, Sheri D. Schully, Brian K. Ahmedani, Maria Argos, Robert M. Cronin, Christopher J. O'Donnell, Mona Fouad, David B. Goldstein, Philip Greenland, Scott J. Hebbring, Elizabeth W. Karlson, Parinda Khatri, Bruce Korf, Jordan W. Smoller, Stephen Sodeke, John Wilbanks, Justin Hentges, Stephen Mockrin, Christopher Lunt, Stephanie A. Devaney, Kelly Gebo, Joshua C. Denny, Robert J. Carroll, David Glazer, Paul A. Harris, George Hripcsak, Anthony A. Philippakis, Dan M. Roden
2022	J	`jnl`	The evolving privacy and security concerns for genomic data analysis and sharing as observed from the iDASH competition. J. Am. Medical Informatics Assoc. Tsung-Ting Kuo, Xiaoqian Jiang, Haixu Tang, Xiaofeng Wang, Arif Ozgun Harmanci, Miran Kim, Kai W. Post, Diyue Bu, Tyler Bath, Jihoon Kim, Weijie Liu, Hongbo Chen, Lucila Ohno-Machado
2022	J	`jnl`	VERTICOX: Vertically Distributed Cox Proportional Hazards Model Using the Alternating Direction Method of Multipliers. IEEE Trans. Knowl. Data Eng. Wenrui Dai, Xiaoqian Jiang, Luca Bonomi, Yong Li, Hongkai Xiong, Lucila Ohno-Machado
2021	J	`jnl`	Benchmarking blockchain-based gene-drug interaction data sharing methods: A case study from the iDASH 2019 secure genome analysis competition blockchain track. Int. J. Medical Informatics Tsung-Ting Kuo, Tyler Bath, Shuaicheng Ma, Nicholas D. Pattengale, Meng Yang, Yang Cao, Corey M. Hudson, Jihoon Kim, Kai W. Post, Li Xiong, Lucila Ohno-Machado
2021	J	`jnl`	Calibrating predictive model estimates in a distributed network of patient data. J. Biomed. Informatics Yingxiang Huang, Xiaoqian Jiang, Rodney A. Gabriel, Lucila Ohno-Machado
2021	Misc	`conf`	Early Prediction of Positive Clostridioides Difficile Test Results. AMIA Anh Pham, Robert El-Kareh, Lucila Ohno-Machado, Tsung-Ting Kuo
2021	J	`jnl`	How do we share data in COVID-19 research? A systematic review of COVID-19 datasets in PubMed Central Articles. Briefings Bioinform. Xu Zuo, Yong Chen, Lucila Ohno-Machado, Hua Xu
2021	Misc	`conf`	Privacy-Preserving Federated Biomedical Data Analysis. AMIA Xiaoqian Jiang, Luca Bonomi, Jaideep Vaidya, Li Xiong, Lucila Ohno-Machado
2021	J	`jnl`	Privacy-protecting, reliable response data discovery using COVID-19 patient observations. J. Am. Medical Informatics Assoc. Jihoon Kim, Larissa Neumann, Paulina Paul, Michele E. Day, Michael Aratow, Douglas S. Bell, Jason N. Doctor, Ludwig Christian G. Hinske, Xiaoqian Jiang, Katherine K. Kim, Michael E. Matheny, Daniella Meeker, Mark J. Pletcher, Lisa M. Schilling, Spencer L. SooHoo, Hua Xu, Kai Zheng, Lucila Ohno-Machado
2021	J	`jnl`	Use of electronic health records to support a public health response to the COVID-19 pandemic in the United States: a perspective from 15 academic medical centers. J. Am. Medical Informatics Assoc. Subha Madhavan, Lisa Bastarache, Jeffrey S. Brown, Atul J. Butte, David A. Dorr, Peter J. Embí, Charles P. Friedman, Kevin B. Johnson, Jason H. Moore, Isaac S. Kohane, Philip R. O. Payne, Jessica D. Tenenbaum, Mark G. Weiner, Adam B. Wilcox, Lucila Ohno-Machado
2020	J	`jnl`	A systematic literature review of Native American and Pacific Islanders' perspectives on health data privacy in the United States. J. Am. Medical Informatics Assoc. Riley Taitingfong, Cinnamon S. Bloss, Cynthia Triplett, Julie Cakici, Nanibaa' Garrison, Shelley Cole, Julie A. Stoner, Lucila Ohno-Machado
2020	J	`jnl`	A tutorial on calibration measurements and calibration models for clinical prediction models. J. Am. Medical Informatics Assoc. Yingxiang Huang, Wentao Li, Fima Macheret, Rodney A. Gabriel, Lucila Ohno-Machado
2020	J	`jnl`	COVID-19 TestNorm: A tool to normalize COVID-19 testing names to LOINC codes. J. Am. Medical Informatics Assoc. Xiao Dong, Jianfu Li, Ekin Soysal, Jiang Bian, Scott L. DuVall, Elizabeth Hanchrow, Hongfang Liu, Kristine E. Lynch, Michael E. Matheny, Karthik Natarajan, Lucila Ohno-Machado, Serguei Pakhomov, Ruth Madeleine Reeves, Amy M. Sitapati, Swapna Abhyankar, Theresa Cullen, Jami Deckard, Xiaoqian Jiang, Robert Murphy, Hua Xu
2020	J	`jnl`	EXpectation Propagation LOgistic REgRession on permissioned blockCHAIN (ExplorerChain): decentralized online healthcare/genomics predictive model learning. J. Am. Medical Informatics Assoc. Tsung-Ting Kuo, Rodney A. Gabriel, Krishna R. Cidambi, Lucila Ohno-Machado
2020	J	`jnl`	Efficient determination of equivalence for encrypted data. Comput. Secur. Jason N. Doctor, Jaideep Vaidya, Xiaoqian Jiang, Shuang Wang, Lisa M. Schilling, Toan Ong, Michael E. Matheny, Lucila Ohno-Machado, Daniella Meeker
2020	Misc	`conf`	Longitudinal Cohort Data Transformation Based on a Common Data Model and Metadata Standards: Examples from the Strong Heart Study. AMIA Jihoon Kim, Paulina Paul, Pravina Kota, Yu R. Park, Julie A. Stoner, Wenyu Wang, Ying Zhang, Elisa Lee, Lucila Ohno-Machado
2020	J	`jnl`	Promoting Quality Face-to-Face Communication during Ophthalmology Encounters in the Electronic Health Record Era. Appl. Clin. Inform. Sally L. Baxter, Helena E. Gali, Michael F. Chiang, Michelle R. Hribar, Lucila Ohno-Machado, Robert El-Kareh, Abigail E. Huang, Heather E. Chen, Andrew Camp, Don O. Kikkawa, Bobby S. Korn, Jeffrey E. Lee, Christopher A. Longhurst, Marlene Millen
2020	J	`jnl`	Protecting patient privacy in survival analyses. J. Am. Medical Informatics Assoc. Luca Bonomi, Xiaoqian Jiang, Lucila Ohno-Machado
2020	J	`jnl`	Secure and Differentially Private Logistic Regression for Horizontally Distributed Data. IEEE Trans. Inf. Forensics Secur. Miran Kim, Junghye Lee, Lucila Ohno-Machado, Xiaoqian Jiang
2019	J	`jnl`	Comparison of blockchain platforms: a systematic review and healthcare examples. J. Am. Medical Informatics Assoc. Tsung-Ting Kuo, Hugo Zavaleta Rojas, Lucila Ohno-Machado
2019	Misc	`conf`	Current Applications of Blockchain Technology in Biomedical Research and Healthcare. AMIA Tsung-Ting Kuo, Amar Das, Kim Augustine, Peng Dana Zhang, Lucila Ohno-Machado
2019	Misc	`conf`	Engaging heart failure patients from a clinical data research network: A survey on willingness to participate in different types of research. AMIA Yong Kyung Choi, Javier E. Lopez, Daniella Meeker, Lucila Ohno-Machado, Katherine K. Kim
2019	J	`jnl`	Evaluating and sharing global genetic ancestry in biomedical datasets. J. Am. Medical Informatics Assoc. Olivier Harismendy, Jihoon Kim, Xiaojun Xu, Lucila Ohno-Machado
2019	J	`jnl`	Fair compute loads enabled by blockchain: sharing models by alternating client and server roles. J. Am. Medical Informatics Assoc. Tsung-Ting Kuo, Rodney A. Gabriel, Lucila Ohno-Machado
2019	—	`ed.`	MEDINFO 2019: Health and Wellbeing e-Networks for All - Proceedings of the 17th World Congress on Medical and Health Informatics, Lyon, France, 25-30 August 2019. MedInfo Lucila Ohno-Machado, Brigitte Séroussi
2019	Misc	`conf`	Protecting Patient Privacy in Survival Analyses. AMIA Luca Bonomi, Xiaoqian Jiang, Lucila Ohno-Machado
2019	Misc	`conf`	VERTICOX: Vertically Distributed Cox Proportional Hazards Model. AMIA Xiaoqian Jiang, Luca Bonomi, Lucila Ohno-Machado
2018	J	`jnl`	A diversified informatics portfolio covering health sciences and healthcare. J. Am. Medical Informatics Assoc. Lucila Ohno-Machado
2018	J	`jnl`	Biomedical informatics and data science: evolving fields with significant overlap. J. Am. Medical Informatics Assoc. Patricia Flatley Brennan, Michael F. Chiang, Lucila Ohno-Machado
2018	J	`jnl`	Clinical decision support: informatics interventions for better patient care. J. Am. Medical Informatics Assoc. Lucila Ohno-Machado
2018	J	`jnl`	Clinical informatics applications of medication reconciliation, decision support systems, and online portal patient-provider communications. J. Am. Medical Informatics Assoc. Lucila Ohno-Machado
2018	J	`jnl`	Clinical research informatics: a growing subspecialization of biomedical informatics. J. Am. Medical Informatics Assoc. Lucila Ohno-Machado
2018	J	`jnl`	Data science and artificial intelligence to improve clinical practice and research. J. Am. Medical Informatics Assoc. Lucila Ohno-Machado
2018	J	`jnl`	DataMed - an open source discovery index for finding biomedical datasets. J. Am. Medical Informatics Assoc. Xiaoling Chen, Anupama E. Gururaj, Ibrahim Burak Özyurt, Ruiling Liu, Ergin Soysal, Trevor Cohen, Firat Tiryaki, Yueling Li, Nansu Zong, Min Jiang, Deevakar Rogith, Mandana Salimi, Hyeon-Eui Kim, Philippe Rocca-Serra, Alejandra N. González-Beltrán, Claudiu Farcas, Todd Johnson, Ronald Margolis, George Alter, Susanna-Assunta Sansone, Ian Fore, Lucila Ohno-Machado, Jeffrey S. Grethe, Hua Xu
2018	J	`jnl`	Efficient Determination of Equivalence for Encrypted Data. CoRR Jason N. Doctor, Jaideep Vaidya, Xiaoqian Jiang, Shuang Wang, Lisa M. Schilling, Toan Ong, Michael E. Matheny, Lucila Ohno-Machado, Daniella Meeker
2018	J	`jnl`	Electronic health records and health information exchange. J. Am. Medical Informatics Assoc. Lucila Ohno-Machado
2018	J	`jnl`	Enabling patients to be active participants in healthcare via informatics interventions. J. Am. Medical Informatics Assoc. Lucila Ohno-Machado
2018	J	`jnl`	Finding relevant biomedical datasets: the UC San Diego solution for the bioCADDIE Retrieval Challenge. Database J. Biol. Databases Curation Wei Wei, Zhanglong Ji, Yupeng He, Kai Zhang, Yuanchi Ha, Qi Li, Lucila Ohno-Machado
2018	J	`jnl`	Informatics for all: from provider- to patient-based applications that can include family and friends. J. Am. Medical Informatics Assoc. Lucila Ohno-Machado
2018	J	`jnl`	Informatics systems for health care providers, patients, and families. J. Am. Medical Informatics Assoc. Lucila Ohno-Machado
2018	J	`jnl`	ModelChain: Decentralized Privacy-Preserving Healthcare Predictive Modeling Framework on Private Blockchain Networks. CoRR Tsung-Ting Kuo, Lucila Ohno-Machado
2018	J	`jnl`	Perfectly Secure and Efficient Two-Party Electronic-Health-Record Linkage. IEEE Internet Comput. Feng Chen, Xiaoqian Jiang, Shuang Wang, Lisa M. Schilling, Daniella Meeker, Toan Ong, Michael E. Matheny, Jason N. Doctor, Lucila Ohno-Machado, Jaideep Vaidya
2018	J	`jnl`	Reflections on the journey of editing a scientific journal. J. Am. Medical Informatics Assoc. Lucila Ohno-Machado
2018	J	`jnl`	Sharing data from electronic health records within, across, and beyond healthcare institutions: Current trends and perspectives. J. Am. Medical Informatics Assoc. Lucila Ohno-Machado
2018	J	`jnl`	Special Focus on Biomedical Data Science. J. Am. Medical Informatics Assoc. Lucila Ohno-Machado
2018	J	`jnl`	The Impact of Automatic Pre-annotation in Clinical Note Data Element Extraction - the CLEAN Tool. CoRR Tsung-Ting Kuo, Jina Huh, Jihoon Kim, Robert E. El-Kareh, Siddharth Singh, Stephanie Feudjio Feupe, Vincent Kuri, Gordon Lin, Michele E. Day, Lucila Ohno-Machado, Chun-Nan Hsu
2018	J	`jnl`	The role of informatics in promoting patient safety. J. Am. Medical Informatics Assoc. Lucila Ohno-Machado
2018	J	`jnl`	User needs analysis and usability assessment of DataMed - a biomedical data discovery index. J. Am. Medical Informatics Assoc. Ram Dixit, Deevakar Rogith, Vidya Narayana, Mandana Salimi, Anupama E. Gururaj, Lucila Ohno-Machado, Hua Xu, Todd R. Johnson
2017	Misc	`conf`	A Natural Language Processing System for Biomedical Dataset Retrieval. AMIA Xiaoling Chen, Jun Xu, Jingqi Wang, Anupama E. Gururaj, Lucila Ohno-Machado, Hua Xu
2017	Misc	`conf`	A Scalable Privacy-preserving Data Generation Methodology for Exploratory Analysis. AMIA Jaideep Vaidya, Basit Shafiq, Muazzam Asani, Nabil R. Adam, Xiaoqian Jiang, Lucila Ohno-Machado
2017	J	`jnl`	A publicly available benchmark for biomedical dataset retrieval: the reference standard for the 2016 bioCADDIE dataset retrieval challenge. Database J. Biol. Databases Curation Trevor Cohen, Kirk Roberts, Anupama E. Gururaj, Xiaoling Chen, Saeid Pournejati, George Alter, William R. Hersh, Dina Demner-Fushman, Lucila Ohno-Machado, Hua Xu
2017	J	`jnl`	Addressing Beacon re-identification attacks: quantification and mitigation of privacy risks. J. Am. Medical Informatics Assoc. Jean Louis Raisaro, Florian Tramèr, Zhanglong Ji, Diyue Bu, Yongan Zhao, W. Knox Carey, David D. Lloyd, Heidi Sofia, Dixie Baker, Paul Flicek, Suyash S. Shringarpure, Carlos D. Bustamante, Shuang Wang, Xiaoqian Jiang, Lucila Ohno-Machado, Haixu Tang, Xiaofeng Wang, Jean-Pierre Hubaux
2017	J	`jnl`	Advancing healthcare and biomedical research via new data-driven approaches. J. Am. Medical Informatics Assoc. Lucila Ohno-Machado
2017	J	`jnl`	Blockchain distributed ledger technologies for biomedical and health care applications. J. Am. Medical Informatics Assoc. Tsung-Ting Kuo, Hyeon-Eui Kim, Lucila Ohno-Machado
2017	Misc	`conf`	Consumer Views of Electronic Health and Genetic Data Sharing: Findings of a National Survey. AMIA Katherine K. Kim, Lucila Ohno-Machado
2017	—	`conf`	Count Everything: Secure Count Query Framework Across Big Data Centers. CRI Xiaoqian Jiang, Claudiu Farcas, Benedict Paten, Mark Diekhans, Paul Avillach, Wallace Wadge, David Haussler, Lucila Ohno-Machado, Ida Sim
2017	J	`jnl`	Developing a framework for digital objects in the Big Data to Knowledge (BD2K) commons: Report from the Commons Framework Pilots workshop. J. Biomed. Informatics Kathleen M. Jagodnik, Simon Koplev, Sherry L. Jenkins, Lucila Ohno-Machado, Benedict Paten, Stephan C. Schürer, Michel Dumontier, Ruben Verborgh, Alex A. T. Bui, Peipei Ping, Neil J. McKenna, Ravi K. Madduri, Ajay Pillai, Avi Ma'ayan
2017	J	`jnl`	Education of informatics professionals and development of electronic information resources for clinicians, patients, health scientists, and study participants. J. Am. Medical Informatics Assoc. Lucila Ohno-Machado
2017	J	`jnl`	Electronic health records: usability and utilization by health care providers and patients. J. Am. Medical Informatics Assoc. Lucila Ohno-Machado
2017	J	`jnl`	Health information technology and patient safety. J. Am. Medical Informatics Assoc. Lucila Ohno-Machado
2017	Misc	`conf`	Honoring Patient's Data Sharing Preferences: Implementation Challenges. AMIA Elizabeth A. Bell, Diana Guijarro, Imho Jang, Wenhong Zhu, Tyler Bath, Gwangnoh Yun, Masud Rahman, Chao Jiang, Xiaoqian Jiang, Lucila Ohno-Machado, Hyeoneui Kim
2017	Misc	`conf`	Information Retrieval for Biomedical Datasets: The 2016 bioCADDIE Challenge. AMIA Kirk Roberts, Anupama E. Gururaj, Xiaoling Chen, Saeid Pournejati, Trevor Cohen, William R. Hersh, Dina Demner-Fushman, Lucila Ohno-Machado, Hua Xu
2017	J	`jnl`	Information retrieval for biomedical datasets: the 2016 bioCADDIE dataset retrieval challenge. Database J. Biol. Databases Curation Kirk Roberts, Anupama E. Gururaj, Xiaoling Chen, Saeid Pournejati, William R. Hersh, Dina Demner-Fushman, Lucila Ohno-Machado, Trevor Cohen, Hua Xu
2017	J	`jnl`	JAMIA is going green. J. Am. Medical Informatics Assoc. Lucila Ohno-Machado
2017	Misc	`conf`	MALTASE: a Mobile AppLication To improve patients' Access to their data Sharing preferencE. AMIA Chao Jiang, Xiaoqian Jiang, Shuang Wang, Diana Guijarro, Elizabeth A. Bell, Imho Jang, Gwangnoh Yun, Masud Rahman, Lucila Ohno-Machado, Hyeoneui Kim
2017	J	`jnl`	Mechanisms to protect the privacy of families when using the transmission disequilibrium test in genome-wide association studies. Bioinform. Meng Wang, Zhanglong Ji, Shuang Wang, Jihoon Kim, Hai Yang, Xiaoqian Jiang, Lucila Ohno-Machado
2017	Misc	`conf`	Meeting User Needs for a Data Discovery Index of Biomedical Big Data. AMIA Ram Dixit, Deevakar Rogith, Vidya Narayana, Mandana Salimi, Anupama E. Gururaj, Lucila Ohno-Machado, Hua Xu, Todd R. Johnson
2017	J	`jnl`	MiRIAD update: using alternative polyadenylation, protein interaction network analysis and additional species to enhance exploration of the role of intragenic miRNAs and their host genes. Database J. Biol. Databases Curation Christian Hinske, Felipe R. C. dos Santos, Daniel T. Ohara, Lucila Ohno-Machado, Simone Kreth, Pedro A. F. Galante
2017	J	`jnl`	PRINCESS: Privacy-protecting Rare disease International Network Collaboration via Encryption through Software guard extensionS. Bioinform. Feng Chen, Shuang Wang, Xiaoqian Jiang, Sijie Ding, Yao Lu, Jihoon Kim, Süleyman Cenk Sahinalp, Chisato Shimizu, Jane C. Burns, Victoria J. Wright, Eileen Png, Martin L. Hibberd, David D. Lloyd, Hai Yang, Amalio Telenti, Cinnamon S. Bloss, Dov Fox, Kristin E. Lauter, Lucila Ohno-Machado
2017	—	`conf`	Prerequisites for International Exchanges of Health Information for Record Research: Comparison of Australian, Austrian, Finnish, Swiss, and US Policies. MedInfo Hanna Suominen, Henning Müller, Lucila Ohno-Machado, Sanna Salanterä, Günter Schreier, Leif Hanlen
2017	Misc	`conf`	Project A-G-T-C: Adding Genetic Test data in Clinical data warehouse. AMIA Jonathan Wickes, Hyeoneui Kim, Hyun-Dae Kim, Jihoon Kim, Wenhong Zhu, Lucila Ohno-Machado, Olivier Harismendy
2017	Misc	`conf`	Self-Service Cohort Discovery across Five Academic Health Centers: Usage and User Evaluations of the University of California Research eXchange. AMIA Douglas S. Bell, Lisa Dahm, Nick R. Anderson, Ida Sim, Pralav P. Dessai, Marianne Zachariah, Lucila Ohno-Machado
2017	J	`jnl`	Understanding and mitigating the digital divide in health care. J. Am. Medical Informatics Assoc. Lucila Ohno-Machado
2017	Misc	`conf`	Using a Convolutional Neural Network for Automatic Medical Subject Headings (MeSH) Assignment. AMIA Wei Wei, Zhanglong Ji, Lucila Ohno-Machado
2017	J	`jnl`	Using health information technology for clinical decision support and predictive analytics. J. Am. Medical Informatics Assoc. Lucila Ohno-Machado
2017	J	`jnl`	iCONCUR: informed consent for clinical data and bio-sample use for research. J. Am. Medical Informatics Assoc. Hyeoneui Kim, Elizabeth A. Bell, Jihoon Kim, Amy M. Sitapati, Joe Ramsdell, Claudiu Farcas, Dexter Friedman, Stephanie Feudjio Feupe, Lucila Ohno-Machado
2016	Misc	`conf`	A Multi-Institutional Honest Broker in the Cloud. AMIA Claudiu Farcas, Tyler Bath, Paulina Paul, Antonios Koures, Lucila Ohno-Machado
2016	Misc	`conf`	A Scalable Dataset Indexing Infrastructure for the bioCADDIE Data Discovery System. AMIA Jeffrey S. Grethe, Ibrahim Burak Özyurt, Hua Xu, Xiaoling Chen, Ruiling Liu, Ergin Soysal, Anupama E. Gururaj, Hyeon-Eui Kim, Trevor Cohen, Todd R. Johnson, Mandana Salimi, Saeid Pournejati, Min Jiang, Claudiu Farcas, Alejandra N. González-Beltrán, Philippe Rocca-Serra, Muhamamd F. Amith, Cui Tao, Ian Fore, Ronald Margolis, George Alter, Susanna-Assunta Sansone, Lucila Ohno-Machado
2016	J	`jnl`	A message to the next generation of biomedical informatics professionals. J. Am. Medical Informatics Assoc. Lucila Ohno-Machado
2016	Misc	`conf`	An Integrated Privacy Preserving Collaborative Analytics Platform: The PCORnet pSCANNER-PopMedNet TM Software Suite. AMIA Michael E. Matheny, Dax M. Westerman, Laura Pearlman, Josh Gieringer, Xiaoqian Jiang, Claudiu Farcas, Tara K. Knight, Shuang Wang, Amy Perkins, Lucila Ohno-Machado, Bill Clarke, Daniella Meeker
2016	Misc	`conf`	An Online Delphi Consensus Panel for Prioritizing Person-Centered Outcomes Research Topics. AMIA Katherine K. Kim, Dmitry Khodyakov, Kate Marie, Marika Booth, Paul A. Heidenreich, Zhaoping Li, Michael K. Ong, Jane C. Burns, Daniella Meeker, Lucila Ohno-Machado
2016	J	`jnl`	Building systems that change clinical practice and advance health sciences research. J. Am. Medical Informatics Assoc. Lucila Ohno-Machado
2016	Misc	`conf`	Calibration of Predictive Models for Clinical Decision Making: Personalizing Prevention, Treatment, and Disease Progression. AMIA Lucila Ohno-Machado, George Hripcsak, Michael E. Matheny, Yuan Wu, Xiaoqian Jiang
2016	Misc	`conf`	Categorizing Clinical Data to Make it Easier for Patients to Indicate Their Data Sharing Preferences. AMIA Elizabeth A. Bell, Diana Guijarro, Hyeon-Eui Kim, Alexander Richardson, Jina Huh, Shuang Wang, Lucila Ohno-Machado
2016	J	`jnl`	Data and the clinical decision support loop. J. Am. Medical Informatics Assoc. Lucila Ohno-Machado
2016	J	`jnl`	Data-driven informatics tools targeting patients and providers. J. Am. Medical Informatics Assoc. Lucila Ohno-Machado
2016	Misc	`conf`	Developing a predictive model for discharge delay in the Post-Anesthesia Care Unit. AMIA Rodney A. Gabriel, Jihoon Kim, Lucila Ohno-Machado
2016	Misc	`conf`	Developing an Electronic Health Record-Based Cohort of Patients with Inflammatory Bowel Diseases for Observational Patient-Centered Outcomes Research. AMIA Siddharth Singh, Paulina Paul, Chun-Nan Hsu, Lucila Ohno-Machado
2016	Misc	`conf`	Development of DataMed, a Data Discovery Index Prototype by bioCADDIE: Laying the Groundwork for Biomedical Data Discovery. AMIA Hua Xu, Jeffrey S. Grethe, Xiaoling Chen, Ruiling Liu, Ergin Soysal, Anupama E. Gururaj, Yueling Li, Ibrahim Burak Özyurt, Hyeon-Eui Kim, Trevor Cohen, Todd R. Johnson, Mandana Salimi, Saeid Pournejati, Min Jiang, Claudiu Farcas, Alejandra N. González-Beltrán, Philippe Rocca-Serra, Muhamamd F. Amith, Cui Tao, Ian Fore, Ronald Margolis, George Alter, Susanna-Assunta Sansone, Lucila Ohno-Machado
2016	Misc	`conf`	Does Health Status Affect Patient Preferences for Sharing Clinical Data for Research? AMIA Imho Jang, Diana Guijarro, Jimmy Quach, Jihoon Kim, Hyeon-Eui Kim, Elizabeth A. Bell, Robert E. El-Kareh, Lucila Ohno-Machado
2016	Misc	`conf`	Ensembles of NLP Tools for Data Element Extraction from Clinical Notes. AMIA Tsung-Ting Kuo, Pallavi Rao, Cleo K. Maehara, Son Doan, Juan D. Chaparro, Michele E. Day, Claudiu Farcas, Lucila Ohno-Machado, Chun-Nan Hsu
2016	Misc	`conf`	Feasibility of Representing Data from Published Nursing Research Using the OMOP Common Data Model. AMIA Hyeon-Eui Kim, Jeeyae Choi, Imho Jang, Jimmy Quach, Lucila Ohno-Machado
2016	J	`jnl`	Prerequisites for International Exchanges of Health Information: Comparison of Australian, Austrian, Finnish, Swiss, and US Privacy Policies. CoRR Hanna Suominen, Henning Müller, Lucila Ohno-Machado, Sanna Salanterä, Günter Schreier, Leif Hanlen
2016	J	`jnl`	Secure Multi-pArty Computation Grid LOgistic REgression (SMAC-GLORE). BMC Medical Informatics Decis. Mak. Haoyi Shi, Chao Jiang, Wenrui Dai, Xiaoqian Jiang, Yuzhe Richard Tang, Lucila Ohno-Machado, Shuang Wang
2016	J	`jnl`	Using informatics to engage patients and healthcare providers. J. Am. Medical Informatics Assoc. Lucila Ohno-Machado
2016	Misc	`conf`	Using the hierarchical structure of the Medical Subject Headings (MeSH) for automatic MeSH term assignment. AMIA Wei Wei, Zhanglong Ji, Lucila Ohno-Machado
2016	J	`jnl`	VERTIcal Grid lOgistic regression (VERTIGO). J. Am. Medical Informatics Assoc. Yong Li, Xiaoqian Jiang, Shuang Wang, Hongkai Xiong, Lucila Ohno-Machado
2016	Misc	`conf`	iCONCUR: informed CONsent for Clinical data and biosample Use for Research. AMIA Lucila Ohno-Machado, Hyeon-Eui Kim, Elizabeth A. Bell, Xiaoqian Jiang, Dexter Friedman, Claudiu Farcas
2015	J	`jnl`	A journal's role in resource sharing and reproducibility. J. Am. Medical Informatics Assoc. Lucila Ohno-Machado
2015	J	`jnl`	A system to build distributed multivariate models and manage disparate data sharing policies: implementation in the scalable national network for effectiveness research. J. Am. Medical Informatics Assoc. Daniella Meeker, Xiaoqian Jiang, Michael E. Matheny, Claudiu Farcas, Michel D'Arcy, Laura Pearlman, Lavanya Nookala, Michele E. Day, Katherine K. Kim, Hyeoneui Kim, Aziz A. Boxwala, Robert E. El-Kareh, Grace Kuo, Frederic S. Resnic, Carl Kesselman, Lucila Ohno-Machado
2015	J	`jnl`	Choosing blindly but wisely: differentially private solicitation of DNA datasets for disease marker discovery. J. Am. Medical Informatics Assoc. Yongan Zhao, Xiaofeng Wang, Xiaoqian Jiang, Lucila Ohno-Machado, Haixu Tang
2015	J	`jnl`	Comparison of consumers' views on electronic data sharing for healthcare and research. J. Am. Medical Informatics Assoc. Katherine K. Kim, Jill G. Joseph, Lucila Ohno-Machado
2015	J	`jnl`	Grid multi-category response logistic models. BMC Medical Informatics Decis. Mak. Yuan Wu, Xiaoqian Jiang, Shuang Wang, Wenchao Jiang, Pinghao Li, Lucila Ohno-Machado
2015	J	`jnl`	Highlights. J. Am. Medical Informatics Assoc. Lucila Ohno-Machado
2015	J	`jnl`	Highlights. J. Am. Medical Informatics Assoc. Lucila Ohno-Machado
2015	J	`jnl`	Mining electronic health record data: finding the gold nuggets. J. Am. Medical Informatics Assoc. Lucila Ohno-Machado
2015	Misc	`conf`	Patient privacy and "de-identified" health records in the genomic era. AMIA Jessica D. Tenenbaum, Greg Biggers, Bradley A. Malin, Lucila Ohno-Machado, Leslie Wolf
2015	—	`ch.`	Preserving Genome Privacy in Research Studies. Medical Data Privacy Handbook Shuang Wang, Xiaoqian Jiang, Dov Fox, Lucila Ohno-Machado
2015	J	`jnl`	Special online issue focusing on patients and caregivers. J. Am. Medical Informatics Assoc. Lucila Ohno-Machado
2015	J	`jnl`	Tailoring informatics interventions to patients and healthcare providers. J. Am. Medical Informatics Assoc. Lucila Ohno-Machado
2015	Misc	`conf`	Transforming the National Department of Veterans Affairs Data Warehouse to the OMOP Common Data Model. AMIA Fern FitzHenry, Jesse Brannen, Jason N. Denton, Jonathan R. Nebeker, Scott L. DuVall, Freneka F. Minter, Jeffrey Scehnet, Brian C. Sauer, Lucila Ohno-Machado, Michael E. Matheny
2015	J	`jnl`	Trends in biomedical informatics: automated topic analysis of JAMIA articles. J. Am. Medical Informatics Assoc. Dong Han, Shuang Wang, Chao Jiang, Xiaoqian Jiang, Hyeon-Eui Kim, Jimeng Sun, Lucila Ohno-Machado
2015	J	`jnl`	Trends in informatics and journal peer-review processes. J. Am. Medical Informatics Assoc. Lucila Ohno-Machado
2015	J	`jnl`	WebDISCO: a web service for distributed cox model learning without patient-level data sharing. J. Am. Medical Informatics Assoc. Chia-Lun Lu, Shuang Wang, Zhanglong Ji, Yuan Wu, Li Xiong, Xiaoqian Jiang, Lucila Ohno-Machado
2014	Misc	`conf`	A Keyword Suggestion Strategy Based on Citation Networks. AMIA Wei Wei, Shuang Wang, Xiaoqian Jiang, Lucila Ohno-Machado
2014	J	`jnl`	A community assessment of privacy preserving techniques for human genomes. BMC Medical Informatics Decis. Mak. Xiaoqian Jiang, Yongan Zhao, Xiaofeng Fang, Bradley A. Malin, Shuang Wang, Lucila Ohno-Machado, Haixu Tang
2014	J	`jnl`	Brief communication: pSCANNER: patient-centered Scalable National Network for Effectiveness Research. J. Am. Medical Informatics Assoc. Lucila Ohno-Machado, Zia Agha, Douglas S. Bell, Lisa Dahm, Michele E. Day, Jason N. Doctor, Davera Gabriel, Maninder K. Kahlon, Katherine K. Kim, Michael A. Hogarth, Michael E. Matheny, Daniella Meeker, Jonathan R. Nebeker
2014	J	`jnl`	Data governance requirements for distributed clinical research networks: triangulating perspectives of diverse stakeholders. J. Am. Medical Informatics Assoc. Katherine K. Kim, Dennis K. Browe, Holly C. Logan, Roberta Holm, Lori Hack, Lucila Ohno-Machado
2014	J	`jnl`	Detecting inappropriate access to electronic health records using collaborative filtering. Mach. Learn. Aditya Krishna Menon, Xiaoqian Jiang, Jihoon Kim, Jaideep Vaidya, Lucila Ohno-Machado
2014	J	`jnl`	Disseminating informatics knowledge and training the next generation of leaders. J. Am. Medical Informatics Assoc. Lucila Ohno-Machado
2014	J	`jnl`	Focusing on the patient: mHealth, social media, electronic health records, and decision support systems. J. Am. Medical Informatics Assoc. Lucila Ohno-Machado
2014	J	`jnl`	HUGO: Hierarchical mUlti-reference Genome cOmpression for aligned reads. J. Am. Medical Informatics Assoc. Pinghao Li, Xiaoqian Jiang, Shuang Wang, Jihoon Kim, Hongkai Xiong, Lucila Ohno-Machado
2014	J	`jnl`	Informatics support for clinical decisions. J. Am. Medical Informatics Assoc. Lucila Ohno-Machado
2014	Misc	`conf`	Informatics without Borders: International Outreach of US-based Training Programs. AMIA Cynthia S. Gadd, Lucila Ohno-Machado, William R. Hersh, Rebecca S. Crowley
2014	J	`jnl`	MAGI: a Node.js web service for fast microRNA-Seq analysis in a GPU infrastructure. Bioinform. Jihoon Kim, Eric Levy, Alex Ferbrache, Petra Stepanowsky, Claudiu Farcas, Shuang Wang, Stefan Brunner, Tyler Bath, Yuan Wu, Lucila Ohno-Machado
2014	J	`jnl`	NIH's J. Am. Medical Informatics Assoc. Lucila Ohno-Machado
2014	J	`jnl`	Natural Language Processing in Biomedicine: A Unified System Architecture Overview. CoRR Son Doan, Mike Conway, Tu Minh Phuong, Lucila Ohno-Machado
2014	J	`jnl`	Networking the country to promote health and scientific discovery. J. Am. Medical Informatics Assoc. Lucila Ohno-Machado
2014	J	`jnl`	PhenDisco: phenotype discovery system for the database of genotypes and phenotypes. J. Am. Medical Informatics Assoc. Son Doan, Ko-Wei Lin, Mike Conway, Lucila Ohno-Machado, Alexander Hsieh, Stephanie Feudjio Feupe, Asher Garland, Mindy K. Ross, Xiaoqian Jiang, Seena Farzaneh, Rebecca Walker, Neda Alipanah, Jing Zhang, Hua Xu, Hyeoneui Kim
2014	Misc	`conf`	Predictive Analytics in Healthcare (HPA): Considerations and Challenges. AMIA Suchi Saria, Gabriel J. Escobar, Paul C. Tang, Lucila Ohno-Machado, Alex Dummett
2014	Misc	`conf`	Sharing My Health Data: A Survey of Data Sharing Preferences of Healthy Individuals. AMIA Elizabeth A. Bell, Lucila Ohno-Machado, María Adela Grando
2014	J	`jnl`	Structuring text and standardizing data for clinical and population health applications. J. Am. Medical Informatics Assoc. Lucila Ohno-Machado
2014	J	`jnl`	The role of scientific publication in times of change. J. Am. Medical Informatics Assoc. Lucila Ohno-Machado
2014	Misc	`conf`	Trends in Publication of Nursing Informatics Research. AMIA Hyeoneui Kim, Lucila Ohno-Machado, Janet Oh, Xiaoqian Jiang
2014	J	`jnl`	miRIAD - integrating microRNA inter- and intragenic data. Database J. Biol. Databases Curation Ludwig Christian G. Hinske, Gustavo S. França, Hugo A. M. Torres, Daniel T. Ohara, Camila Miranda Lopes-Ramos, Jens Heyn, Luiz F. L. Reis, Lucila Ohno-Machado, Simone Kreth, Pedro A. F. Galante
2013	J	`jnl`	Abstractions for genomics. Commun. ACM Vineet Bafna, Alin Deutsch, Andrew Heiberg, Christos Kozanitis, Lucila Ohno-Machado, George Varghese
2013	B	`conf`	An Adaptive Difference Distribution-Based Coding with Hierarchical Tree Structure for DNA Sequence Compression. DCC Wenrui Dai, Hongkai Xiong, Xiaoqian Jiang, Lucila Ohno-Machado
2013	—	`conf`	Biomedical CyberInfrastructure challenges. XSEDE Claudiu Farcas, Natasha Balac, Lucila Ohno-Machado
2013	C	`conf`	DELPHI: Data E-platform for personalized population health. Healthcom Yannis Katsis, Chaitanya K. Baru, Ted Chan, Sanjoy Dasgupta, Claudiu Farcas, William G. Griswold, Jeannie Huang, Lucila Ohno-Machado, Yannis Papakonstantinou, Fredric Raab, Kevin Patrick
2013	J	`jnl`	Data science and informatics: when it comes to biomedical data, is there a real distinction? J. Am. Medical Informatics Assoc. Lucila Ohno-Machado
2013	J	`jnl`	Differential-Private Data Publishing Through Component Analysis. Trans. Data Priv. Xiaoqian Jiang, Zhanglong Ji, Shuang Wang, Noman Mohammed, Samuel Cheng, Lucila Ohno-Machado
2013	J	`jnl`	EXpectation Propagation LOgistic REgRession (EXPLORER): Distributed privacy-preserving online model learning. J. Biomed. Informatics Shuang Wang, Xiaoqian Jiang, Yuan Wu, Lijuan Cui, Samuel Cheng, Lucila Ohno-Machado
2013	B	`conf`	Genome Sequence Compression with Distributed Source Coding. DCC Shuang Wang, Xiaoqian Jiang, Lijuan Cui, Wenrui Dai, Nikos Deligiannis, Pinghao Li, Hongkai Xiong, Samuel Cheng, Lucila Ohno-Machado
2013	J	`jnl`	Health surveillance using the internet and other sources of information. J. Am. Medical Informatics Assoc. Lucila Ohno-Machado
2013	J	`jnl`	Informatics that works for you. J. Am. Medical Informatics Assoc. Lucila Ohno-Machado
2013	J	`jnl`	Making it personal: translational bioinformatics. J. Am. Medical Informatics Assoc. Atul J. Butte, Lucila Ohno-Machado
2013	J	`jnl`	Natural language processing: algorithms and tools to extract computable information from EHRs and from the biomedical literature. J. Am. Medical Informatics Assoc. Lucila Ohno-Machado, Prakash M. Nadkarni, Kevin B. Johnson
2013	—	`conf`	Nucleotide sequence alignment using sparse coding and belief propagation. EMBC Aminmohammad Roozgard, Nafise Barzigar, Shuang Wang, Xiaoqian Jiang, Lucila Ohno-Machado, Samuel Cheng
2013	J	`jnl`	Privacy-preserving heterogeneous health data sharing. J. Am. Medical Informatics Assoc. Noman Mohammed, Xiaoqian Jiang, Rui Chen, Benjamin C. M. Fung, Lucila Ohno-Machado
2013	J	`jnl`	SHARE: system design and case studies for statistical health information release. J. Am. Medical Informatics Assoc. James J. Gardner, Li Xiong, Yonghui Xiao, Jingjing Gao, Andrew R. Post, Xiaoqian Jiang, Lucila Ohno-Machado
2013	J	`jnl`	Sharing data for the public good and protecting individual privacy: informatics solutions to combine different goals. J. Am. Medical Informatics Assoc. Lucila Ohno-Machado
2013	Misc	`conf`	Training the Informatics Research Workforce, Part 2. AMIA Valerie Florance, Perry L. Miller, Lucila Ohno-Machado, George Hripcsak, William R. Hersh, George Demiris
2013	J	`jnl`	WebGLORE: a Web service for Grid LOgistic REgression. Bioinform. Wenchao Jiang, Pinghao Li, Shuang Wang, Yuan Wu, Meng Xue, Lucila Ohno-Machado, Xiaoqian Jiang
2012	Misc	`conf`	A Collaborative Framework for Distributed Privacy-Preserving Support Vector Machine Learning. AMIA Jialan Que, Xiaoqian Jiang, Lucila Ohno-Machado
2012	—	`conf`	A Randomized Response Model for Privacy-Preserving Data Dissemination. HISB Xiaoqian Jiang, Shuang Wang, Zhanglong Ji, Lucila Ohno-Machado, Li Xiong
2012	—	`conf`	A Robust Feature Selection Method for Novel Pre-microRNA Identification Using a Combination of Nucleotide-Structure Triplets. HISB Petra Stepanowsky, Jihoon Kim, Lucila Ohno-Machado
2012	J	`jnl`	A patient-driven adaptive prediction technique to improve personalized risk estimation for clinical decision support. J. Am. Medical Informatics Assoc. Xiaoqian Jiang, Aziz A. Boxwala, Robert E. El-Kareh, Jihoon Kim, Lucila Ohno-Machado
2012	J	`jnl`	An improved model for predicting postoperative nausea and vomiting in ambulatory surgery patients using physician-modifiable risk factors. J. Am. Medical Informatics Assoc. Pankaj Sarin, Richard D. Urman, Lucila Ohno-Machado
2012	J	`jnl`	Big science, big data, and a big role for biomedical informatics. J. Am. Medical Informatics Assoc. Lucila Ohno-Machado
2012	—	`conf`	Building an Ontology of Phenotypes for Existing GWAS Studies. HISB Neda Alipanah, Hyeoneui Kim, Lucila Ohno-Machado
2012	J	`jnl`	Calibrating predictive model estimates to support personalized medicine. J. Am. Medical Informatics Assoc. Xiaoqian Jiang, Melanie Osl, Jihoon Kim, Lucila Ohno-Machado
2012	J	`jnl`	Careers in informatics: a diversity of options with an abundance of jobs. J. Am. Medical Informatics Assoc. Lucila Ohno-Machado
2012	J	`jnl`	Computer-based safety surveillance and patient-centered health records. J. Am. Medical Informatics Assoc. Lucila Ohno-Machado
2012	J	`jnl`	Cost-effectiveness of informatics and health IT: impact on finances and quality of care. J. Am. Medical Informatics Assoc. Lucila Ohno-Machado
2012	J	`jnl`	Enhancing Twitter Data Analysis with Simple Semantic Filtering: Example in Tracking Influenza-Like Illnesses CoRR Son Doan, Lucila Ohno-Machado, Nigel Collier
2012	—	`conf`	Enhancing Twitter Data Analysis with Simple Semantic Filtering: Example in Tracking Influenza-Like Illnesses. HISB Son Doan, Lucila Ohno-Machado, Nigel Collier
2012	J	`jnl`	Grid Binary LOgistic REgression (GLORE): building shared models without sharing data. J. Am. Medical Informatics Assoc. Yuan Wu, Xiaoqian Jiang, Jihoon Kim, Lucila Ohno-Machado
2012	Misc	`conf`	Identifying Age Variables in dbGaP using Natural Language Processing. AMIA Alexander Hsieh, Michael Conway, Hyeoneui Kim, Lucila Ohno-Machado
2012	J	`jnl`	Informatics 2.0: implications of social media, mobile health, and patient-reported outcomes for healthcare and individual privacy. J. Am. Medical Informatics Assoc. Lucila Ohno-Machado
2012	J	`jnl`	Informatics research to enable clinically relevant, personalized genomic medicine. J. Am. Medical Informatics Assoc. Lucila Ohno-Machado
2012	Misc	`conf`	Institutional Privacy-preserving Distributed binary Logistic Regression (IPDLR). AMIA Yuan Wu, Xiaoqian Jiang, Lucila Ohno-Machado
2012	J	`jnl`	Predicting accurate probabilities with a ranking loss CoRR Aditya Krishna Menon, Xiaoqian Jiang, Shankar Vembu, Charles Elkan, Lucila Ohno-Machado
2012	A*	`conf`	Predicting accurate probabilities with a ranking loss. ICML Aditya Krishna Menon, Xiaoqian Jiang, Shankar Vembu, Charles Elkan, Lucila Ohno-Machado
2012	—	`conf`	Privacy-Preserving Biometric System for Secure Fingerprint Authentication. HISB Shuang Wang, Xiaoqian Jiang, Lucila Ohno-Machado, Lijuan Cui, Samuel Cheng, Hongkai Xiong
2012	J	`jnl`	Reviewing social media use by clinicians. J. Am. Medical Informatics Assoc. Marcio von Muhlen, Lucila Ohno-Machado
2012	—	`conf`	SecUre Privacy-presERving Medical Image CompRessiOn (SUPERMICRO). HISB Shuang Wang, Xiaoqian Jiang, Lucila Ohno-Machado, Lijuan Cui, Samuel Cheng
2012	Misc	`conf`	Selecting Cases for Whom Additional Tests Can Improve Prognostication. AMIA Xiaoqian Jiang, Jihoon Kim, Yuan Wu, Lucila Ohno-Machado
2012	Misc	`conf`	Sharing Facebook Data For Research: Are College Students Willing to Donate their Data? AMIA Myoung Lah, Karen Calfas, James H. Fowler, Lucila Ohno-Machado
2012	J	`jnl`	Where do we stand in the maze of health information systems? J. Am. Medical Informatics Assoc. Lucila Ohno-Machado
2012	J	`jnl`	iDASH: integrating data for analysis, anonymization, and sharing. J. Am. Medical Informatics Assoc. Lucila Ohno-Machado, Vineet Bafna, Aziz A. Boxwala, Brian E. Chapman, Wendy Webber Chapman, Kamalika Chaudhuri, Michele E. Day, Claudiu Farcas, Nathaniel D. Heintzman, Xiaoqian Jiang, Hyeoneui Kim, Jihoon Kim, Michael E. Matheny, Frederic S. Resnic, Staal Amund Vinterbo
2011	J	`jnl`	A hybrid open-access model to bridge the publishing divide and reach out to a broader community. J. Am. Medical Informatics Assoc. Lucila Ohno-Machado
2011	J	`jnl`	A new J. Am. Medical Informatics Assoc. Lucila Ohno-Machado
2011	J	`jnl`	AnyExpress: Integrated toolkit for analysis of cross-platform gene expression data using a fast interval matching algorithm. BMC Bioinform. Jihoon Kim, Kiltesh Patel, Hyunchul Jung, Winston Patrick Kuo, Lucila Ohno-Machado
2011	J	`jnl`	Biomedical informatics: how we got here and where we are headed. J. Am. Medical Informatics Assoc. Lucila Ohno-Machado
2011	J	`jnl`	Electronic health records and computer-based clinical decision support: are we there yet? J. Am. Medical Informatics Assoc. Lucila Ohno-Machado
2011	J	`jnl`	Evaluation of informatics systems: beyond RCTs and beyond the hospital. J. Am. Medical Informatics Assoc. Harold P. Lehmann, Lucila Ohno-Machado
2011	J	`jnl`	Informatics is about algorithms, systems, people, and social networks. J. Am. Medical Informatics Assoc. Lucila Ohno-Machado
2011	J	`jnl`	Innovative approaches to support patient decision making, improve safety, and enable large-scale clinical research. J. Am. Medical Informatics Assoc. Lucila Ohno-Machado
2011	J	`jnl`	Natural language processing: an introduction. J. Am. Medical Informatics Assoc. Prakash M. Nadkarni, Lucila Ohno-Machado, Wendy Webber Chapman
2011	J	`jnl`	Realizing the full potential of electronic health records: the role of natural language processing. J. Am. Medical Informatics Assoc. Lucila Ohno-Machado
2011	J	`jnl`	Translational bioinformatics: linking knowledge across biological and clinical realms. J. Am. Medical Informatics Assoc. Indra Neil Sarkar, Atul J. Butte, Yves A. Lussier, Peter Tarczy-Hornoch, Lucila Ohno-Machado
2011	J	`jnl`	Trends in biomedical informatics: most cited topics from recent years. J. Am. Medical Informatics Assoc. Hyeoneui Kim, Xiaoqian Jiang, Jihoon Kim, Lucila Ohno-Machado
2011	J	`jnl`	Use of electronic health record systems for decision support. J. Am. Medical Informatics Assoc. Lucila Ohno-Machado
2011	J	`jnl`	Using statistical and machine learning to help institutions detect suspicious access to electronic health records. J. Am. Medical Informatics Assoc. Aziz A. Boxwala, Jihoon Kim, Janice M. Grillo, Lucila Ohno-Machado
2011	J	`jnl`	What's new in informatics. J. Am. Medical Informatics Assoc. Lucila Ohno-Machado
2010	J	`jnl`	Assessing the quality of annotations in asthma gene expression experiments. BMC Bioinform. Ronilda Lacson, Michael Mbagwu, Hisham Yousif, Lucila Ohno-Machado
2010	J	`jnl`	Automating pressure ulcer risk assessment using documented patient data. Int. J. Medical Informatics Hyeoneui Kim, Jeeyae Choi, Sarah A. Thompson, Lindsay Meeker, Patricia C. Dykes, Denise Goldsmith, Lucila Ohno-Machado
2010	J	`jnl`	DSGeo: Software tools for cross-platform analysis of gene expression data in GEO. J. Biomed. Informatics Ronilda Lacson, Erik Pitzer, Jihoon Kim, Pedro A. F. Galante, Christian Hinske, Lucila Ohno-Machado
2010	J	`jnl`	Smart medical environment at the point of care: Auto-tracking clinical interventions at the bed side using RFID technology. Comput. Biol. Medicine Kumiko Ohashi, Sakiko Ota, Lucila Ohno-Machado, Hiroshi Tanaka
2009	J	`jnl`	Editorial: Outstanding Submissions to the AMIA Annual Symposium Now Featured in JAMIA. J. Am. Medical Informatics Assoc. Lucila Ohno-Machado, Randolph A. Miller
2009	J	`jnl`	Evaluation of a large-scale biomedical data annotation initiative. BMC Bioinform. Ronilda Lacson, Erik Pitzer, Christian Hinske, Pedro A. F. Galante, Lucila Ohno-Machado
2009	J	`jnl`	Special Features: Presentation of the 2008 Morris F. Collen Award to Robert A. Greenes. J. Am. Medical Informatics Assoc. Lucila Ohno-Machado, Donald Ellison, Edward H. Shortliffe
2009	J	`jnl`	Towards large-scale sample annotation in gene expression repositories. BMC Bioinform. Erik Pitzer, Ronilda Lacson, Christian Hinske, Jihoon Kim, Pedro A. F. Galante, Lucila Ohno-Machado
2009	J	`jnl`	Using ambient intelligence for physiological monitoring. J. Ambient Intell. Smart Environ. Dorothy Curtis, Jacob Bailey, Esteban J. Pino, Thomas O. Stair, Staal Amund Vinterbo, Jason Waterman, Eugene Shih, John V. Guttag, Robert A. Greenes, Lucila Ohno-Machado
2008	J	`jnl`	Application of Information Technology: SMART - An Integrated Wireless System for Monitoring Unattended Patients. J. Am. Medical Informatics Assoc. Dorothy Curtis, Esteban J. Pino, Jacob Bailey, Eugene Shih, Jason Waterman, Staal Amund Vinterbo, Thomas O. Stair, John V. Guttag, Robert A. Greenes, Lucila Ohno-Machado
2008	Misc	`conf`	Comparison of RFID Systems for Tracking Clinical Interventions at the Bedside. AMIA Kumiko Ohashi, Sakiko Ota, Lucila Ohno-Machado, Hiroshi Tanaka
2008	Misc	`conf`	Improving Calibration of Logistic Regression Models by Local Estimates. AMIA Melanie Osl, Lucila Ohno-Machado, Christian Baumgartner, Bernhard Tilg, Stephan Dreiseitl
2008	—	`conf`	Physiological signal monitoring in the waiting areas of an emergency room. BODYNETS Dorothy Curtis, Eugene Shih, Jason Waterman, John V. Guttag, Jacob Bailey, Thomas O. Stair, Robert A. Greenes, Lucila Ohno-Machado
2007	J	`jnl`	Automatic correspondence of tags and genes (ACTG): a tool for the analysis of SAGE, MPSS and SBS data. Bioinform. Pedro A. F. Galante, Jeff Trimarchi, Constance L. Cepko, Sandro J. de Souza, Lucila Ohno-Machado, Winston Patrick Kuo
2007	J	`jnl`	Effects of SVM parameter optimization on discrimination and calibration for post-procedural PCI mortality. J. Biomed. Informatics Michael E. Matheny, Frederic S. Resnic, Nipun Arora, Lucila Ohno-Machado
2007	J	`jnl`	Modeling Cancer: Integration of "omics" Information in Dynamic Systems. J. Bioinform. Comput. Biol. Beatriz Stransky, Junior Barrera, Lucila Ohno-Machado, Sandro J. de Souza
2007	Misc	`conf`	Rare Adverse Event Monitoring of Medical Devices with the Use of an Automated Surveillance Tool. AMIA Michael E. Matheny, Nipun Arora, Lucila Ohno-Machado, Frederic S. Resnic
2006	J	`jnl`	Approximation properties of haplotype tagging. BMC Bioinform. Staal Amund Vinterbo, Stephan Dreiseitl, Lucila Ohno-Machado
2006	J	`jnl`	Representation in stochastic search for phylogenetic tree reconstruction. J. Biomed. Informatics Griffin M. Weber, Lucila Ohno-Machado, Stuart M. Shieber
2006	J	`jnl`	Research Paper: Monitoring Device Safety in Interventional Cardiology. J. Am. Medical Informatics Assoc. Michael E. Matheny, Lucila Ohno-Machado, Frederic S. Resnic
2005	J	`jnl`	A global goodness-of-fit test for receiver operating characteristic curve analysis via the bootstrap method. J. Biomed. Informatics Kelly H. Zou, Frederic S. Resnic, Ion-Florin Talos, Daniel Goldberg-Zimring, Jui G. Bhagwat, Steven Haker, Ron Kikinis, Ferenc A. Jolesz, Lucila Ohno-Machado
2005	J	`jnl`	Clinical machine learning. J. Biomed. Informatics Lucila Ohno-Machado
2005	A	`conf`	Combining Classifiers Using Their Receiver Operating Characteristics and Maximum Likelihood Estimation. MICCAI Steven Haker, William M. Wells III, Simon K. Warfield, Ion-Florin Talos, Jui G. Bhagwat, Daniel Goldberg-Zimring, Asim Mian, Lucila Ohno-Machado, Kelly H. Zou
2005	Misc	`conf`	Demonstration of SMART (Scalable Medical Alert Response Technology). AMIA Jason Waterman, Dorothy Curtis, Michel Goraczko, Eugene Shih, Pankaj Sarin, Esteban J. Pino, Lucila Ohno-Machado, Robert A. Greenes, John V. Guttag, Thomas O. Stair
2005	J	`jnl`	Discrimination and calibration of mortality risk prediction models in interventional cardiology. J. Biomed. Informatics Michael E. Matheny, Lucila Ohno-Machado, Frederic S. Resnic
2005	Misc	`conf`	Exploration of a Bayesian Updating Tool to Provide Real-Time Safety Monitoring for New Medical Devices. AMIA Michael E. Matheny, Lucila Ohno-Machado, Frederic S. Resnic
2005	Misc	`conf`	Real-Time ECG Algorithms for Ambulatory Patient Monitoring. AMIA Esteban J. Pino, Lucila Ohno-Machado, Eduardo P. Wiechmann, Dorothy Curtis
2005	J	`jnl`	Small, fuzzy and interpretable gene expression based classifiers. Bioinform. Staal Amund Vinterbo, Eun-Young Kim, Lucila Ohno-Machado
2005	J	`jnl`	The use of receiver operating characteristic curves in biomedical informatics. J. Biomed. Informatics Thomas A. Lasko, Jui G. Bhagwat, Kelly H. Zou, Lucila Ohno-Machado
2005	Misc	`conf`	Training Health Informatics Professionals in Brazil: Rationale for the Development of a New Certificate Program. AMIA Heimar F. Marin, Eduardo Massad, Eduardo P. Marques, Raymundo S. Azevedo, Lucila Ohno-Machado
2005	Misc	`conf`	WLAN PDA to improve efficiency in patient care documentation. AMIA Tomohiro Sawa, Takashi Funahara, Hirokazu Nagatani, Masaharu Okahara, Keiko Sase, Yoshinori Nakata, Lucila Ohno-Machado
2004	J	`jnl`	A greedy algorithm for supervised discretization. J. Biomed. Informatics Richard Butterworth, Dan A. Simovici, Gustavo S. Santos, Lucila Ohno-Machado
2004	J	`jnl`	A primer on gene expression and microarrays for machine learning researchers. J. Biomed. Informatics Winston Patrick Kuo, Eun-Young Kim, Jeff Trimarchi, Tor-Kristian Jenssen, Staal Amund Vinterbo, Lucila Ohno-Machado
2004	J	`jnl`	Diagnostic accuracy of chest X-rays acquired using a digital camera for low-cost teleradiology. Int. J. Medical Informatics Agnieszka Szot, Francine L. Jacobson, Samson Munn, Darius Jazayeri, Edward Nardell, David Harrison, Ralph Drosten, Lucila Ohno-Machado, Laura M. Smeaton, Hamish S. F. Fraser
2004	—	`conf`	International Training in Health Informatics: A Brazilian Experience. MedInfo Heimar F. Marin, Eduardo Massad, Eduardo P. Marques, Lucila Ohno-Machado
2004	J	`jnl`	Multivariate selection of genetic markers in diagnostic classification. Artif. Intell. Medicine Griffin M. Weber, Staal Amund Vinterbo, Lucila Ohno-Machado
2004	J	`jnl`	Protecting patient privacy by quantifiable control of disclosures in disseminated databases. Int. J. Medical Informatics Lucila Ohno-Machado, Paulo Sérgio Panse Silveira, Staal Amund Vinterbo
2004	J	`jnl`	Research on machine learning issues in biomedical informatics modeling. J. Biomed. Informatics Lucila Ohno-Machado
2004	J	`jnl`	The Goodman-Kruskal coefficient and its applications in genetic diagnosis of cancer. IEEE Trans. Biomed. Eng. Szymon Jaroszewicz, Dan A. Simovici, Winston Patrick Kuo, Lucila Ohno-Machado
2003	J	`jnl`	A neural network-based similarity index for clustering DNA microarray data. Comput. Biol. Medicine Tomohiro Sawa, Lucila Ohno-Machado
2003	J	`jnl`	An Epicurean learning approach to gene-expression data classification. Artif. Intell. Medicine Andreas Alexander Albrecht, Staal Amund Vinterbo, Lucila Ohno-Machado
2003	Misc	`conf`	Classification of Movement States in Parkinson's Disease Using a Wearable Ambulatory Monitor. AMIA David A. Klapper, Joshua Weaver, Hubert Fernandez, Lucila Ohno-Machado
2003	Misc	`conf`	Preoperative Information Management System using Wireless PDAs. AMIA Tomohiro Sawa, Masaharu Okahara, Masayuki Santo, Ulrich Schmidt, Yoshinori Nakata, Shigeho Morita, Lucila Ohno-Machado
2003	—	`conf`	Stochastic Algorithms for Gene Expression Analysis (Invited Talk). SAGA Lucila Ohno-Machado, Winston Patrick Kuo
2002	C	`conf`	A Simulated Annealing and Resampling Method for Training Perceptrons to Classify Gene-Expression Data. ICANN Andreas Alexander Albrecht, Staal Amund Vinterbo, C. K. Wong, Lucila Ohno-Machado
2002	J	`jnl`	Analysis of matched mRNA measurements from two different microarray technologies. Bioinform. Winston Patrick Kuo, Tor-Kristian Jenssen, Atul J. Butte, Lucila Ohno-Machado, Isaac S. Kohane
2002	Misc	`conf`	Building an asynchronous web-based tool for machine learning classification. AMIA Griffin M. Weber, Staal Amund Vinterbo, Lucila Ohno-Machado
2002	J	`jnl`	Classification of gene expression data using fuzzy logic. J. Intell. Fuzzy Syst. Lucila Ohno-Machado, Staal Amund Vinterbo, Griffin M. Weber
2002	Misc	`conf`	Comparing imperfect measurements with the Bland-Altman technique: application in gene expression analysis. AMIA Lucila Ohno-Machado, Staal Amund Vinterbo, Stephan Dreiseitl, Tor-Kristian Jenssen, Winston Patrick Kuo
2002	J	`jnl`	Disambiguation Data: Extracting Information from Anonymized Sources. J. Am. Medical Informatics Assoc. Stephan Dreiseitl, Staal Amund Vinterbo, Lucila Ohno-Machado
2002	J	`jnl`	Effects of Data Anonymization by Cell Suppression on Descriptive Statistics and Predictive Modeling Performance. J. Am. Medical Informatics Assoc. Lucila Ohno-Machado, Staal Amund Vinterbo, Stephan Dreiseitl
2002	Misc	`conf`	Evaluation of the Diagnostic Accuracy of Chest X-rays Acquired Using a Digital Camera for Low-cost Teleradiology. AMIA Agnieszka Szot, Darius Jazayeri, Francine L. Jacobson, Lucila Ohno-Machado, Laura M. Smeaton, Hamish Fraser
2002	Misc	`conf`	Gene expression levels in different stages of progression in oral squamous cell carcinoma. AMIA Winston Patrick Kuo, Tor-Kristian Jenssen, Peter J. Park, Mark W. Lingen, Rifat Hasina, Lucila Ohno-Machado
2002	J	`jnl`	Generation of Dynamically Configured Check Lists for Intra-Operative Problems: Using a Set Covering Algorithm. J. Am. Medical Informatics Assoc. Tomohiro Sawa, Lucila Ohno-Machado
2002	J	`jnl`	Logistic regression and artificial neural network classification models: a methodology review. J. Biomed. Informatics Stephan Dreiseitl, Lucila Ohno-Machado
2002	Misc	`conf`	Open source handheld-based EMR for paramedics working in rural areas. AMIA Vishwanath Anantraman, Tarjei S. Mikkelsen, Reshma Khilnani, Vikram S. Kumar, Alex Pentland, Lucila Ohno-Machado
2002	Misc	`conf`	Pharmacokinetic Simulation of Muscle Relaxants: Prediction of Onset Based on Potency. AMIA Tomohiro Sawa, Yoshinori Nakata, Tetsuya Sakamoto, Kunio Suwa, Shigeho Morita, Lucila Ohno-Machado
2002	Misc	`conf`	Providing context-sensitive decision-support based on WHO guidelines. AMIA Heta N. Ray, Aziz A. Boxwala, Vishwanath Anantraman, Lucila Ohno-Machado
2002	Misc	`conf`	Training in Medical Informatics in Northeastern Brazil. AMIA Lucila Ohno-Machado, Heimar F. Marin, Eduardo P. Marques, Eduardo Massad, Marivan S. Abrahao, Hamish S. F. Fraser
2002	J	`jnl`	Visualization and evaluation of clusters for exploratory analysis of gene expression data. J. Biomed. Informatics Ju-Han Kim, Isaac S. Kohane, Lucila Ohno-Machado
2001	J	`jnl`	A Comparison of Machine Learning Methods for the Diagnosis of Pigmented Skin Lesions. J. Biomed. Informatics Stephan Dreiseitl, Lucila Ohno-Machado, Harald Kittler, Staal Amund Vinterbo, Holger Billhardt, Michael Binder
2001	Misc	`conf`	Disambiguation data: extracting information from anonymized sources. AMIA Stephan Dreiseitl, Staal Amund Vinterbo, Lucila Ohno-Machado
2001	Misc	`conf`	Effects of data anonymization by cell suppression on descriptive statistics and predictive modeling performance. AMIA Lucila Ohno-Machado, Staal Amund Vinterbo, Stephan Dreiseitl
2001	Misc	`conf`	Finding appropriate clinical trials: evaluating encoded eligibility criteria with incomplete data. AMIA Nachman Ash, Omolola Ogunyemi, Qing T. Zeng, Lucila Ohno-Machado
2001	Misc	`conf`	Generation of dynamically configured check lists for intra-operative problems using a set of covering algorithms. AMIA Tomohiro Sawa, Lucila Ohno-Machado
2001	Misc	`conf`	Hiding information by cell suppression. AMIA Staal Amund Vinterbo, Lucila Ohno-Machado, Stephan Dreiseitl
2001	Misc	`conf`	International Training in Medical Informatics: The Second Year of the Brazil/USA Project. AMIA Vishwanath Anantraman, Griffin M. Weber, Hamish Fraser, Heimar F. Marin, Eduardo P. Marques, Eduardo Massad, Lucila Ohno-Machado
2001	J	`jnl`	Modeling Medical Prognosis: Survival Analysis Techniques. J. Biomed. Informatics Lucila Ohno-Machado
2001	—	`conf`	Training in Medical Informatics: Combining Onsite and Online Instruction. MedInfo Lucila Ohno-Machado, Heimar F. Marin, Eduardo P. Marques, Eduardo Massad, Robert A. Greenes
2001	Misc	`conf`	Unsupervised Learning from Complex Data: The Matrix Incision Tree Algorithm. Pacific Symposium on Biocomputing Ju-Han Kim, Lucila Ohno-Machado, Isaac S. Kohane
2001	J	`jnl`	Using patient-reportable clinical history factors to predict myocardial infarction. Comput. Biol. Medicine Samuel J. Wang, Lucila Ohno-Machado, Hamish S. F. Fraser, R. Lee Kennedy
2000	J	`jnl`	A genetic algorithm approach to multi-disorder diagnosis. Artif. Intell. Medicine Staal Amund Vinterbo, Lucila Ohno-Machado
2000	Misc	`conf`	Building knowledge in a complex preterm birth problem domain. AMIA Linda K. Goodwin, Sean Maher, Lucila Ohno-Machado, Mary Ann Iannacchione, Patrick Crockett, Stephan Dreiseitl, Staal Amund Vinterbo, W. Edward Hammond
2000	Misc	`conf`	Decision trees and fuzzy logic: a comparison of models for the selection of measles vaccination strategies in Brazil. AMIA Lucila Ohno-Machado, Ronilda Lacson, Eduardo Massad
2000	Misc	`conf`	Development and evaluation of models to predict death and myocardial infarction following coronary angioplasty and stenting. AMIA Frederic S. Resnic, Jeffrey J. Popma, Lucila Ohno-Machado
2000	Misc	`conf`	First Steps Towards Implementing an International Training Program in Medical Informatics: The Brazil/USA Project. AMIA Lucila Ohno-Machado, Aziz A. Boxwala, Hamish Fraser, Robert A. Greenes, Isaac S. Kohane, Heimar F. Marin, Eduardo P. Marques, Eduardo Massad, Beatriz H. Rocha, Roberto A. Rocha, Laura M. Smeaton, Peter Szolovits
2000	Misc	`conf`	GLIF3: the evolution of a guideline representation format. AMIA Mor Peleg, Aziz A. Boxwala, Omolola Ogunyemi, Qing T. Zeng, Samson W. Tu, Ronilda Lacson, Elmer V. Bernstam, Nachman Ash, Peter Mork, Lucila Ohno-Machado, Edward H. Shortliffe, Robert A. Greenes
2000	Misc	`conf`	Major complications after angioplasty in patients with chronic renal failure: a comparison of predictive models. AMIA Ronilda C. Lacson, Lucila Ohno-Machado
2000	Misc	`conf`	Risk stratification in heart failure using artificial neural networks. AMIA Felipe Atienza, Nieves Martínez-Alzamora, José A. De Velasco, Stephan Dreiseitl, Lucila Ohno-Machado
2000	Misc	`conf`	Using electronic data to predict the probability of true bacteremia from positive blood cultures. AMIA Samuel J. Wang, Gilad J. Kuperman, Lucila Ohno-Machado, Andrew B. Onderdonk, Heidi Sandige, David W. Bates
1999	Misc	`conf`	A framework and tools for authoring, editing, documenting, sharing, searching, navigating, and executing computer-based clinical guidelines. AMIA Robert A. Greenes, Aziz A. Boxwala, William N. Sloan, Lucila Ohno-Machado, Stephan R. A. Deibel
1999	Misc	`conf`	A genetic algorithm to select variables in logistic regression: example in the domain of myocardial infarction. AMIA Staal Amund Vinterbo, Lucila Ohno-Machado
1999	Misc	`conf`	Clinical Data Processing Tools: A Machine Learning Resource. AMIA Lucila Ohno-Machado, Staal Amund Vinterbo, Aleksander Øhrn, Stephan Dreiseitl
1999	Misc	`conf`	Decision support for clinical trial eligibility determination in breast cancer. AMIA Lucila Ohno-Machado, Samuel J. Wang, Perry Mar, Aziz A. Boxwala
1999	Misc	`conf`	Enhancing Arden Syntax for Clinical Trial Eligibility Criteria. AMIA Samuel J. Wang, Lucila Ohno-Machado, Perry Mar, Aziz A. Boxwala, Robert A. Greenes
1999	Misc	`conf`	Evaluating variable selection methods for diagnosis of myocardial infarction. AMIA Stephan Dreiseitl, Lucila Ohno-Machado, Staal Amund Vinterbo
1999	Misc	`conf`	Evaluation of Guidelines to Help Patients Recognize Myocardial Infarction. AMIA Hamish S. F. Fraser, Lucila Ohno-Machado, Vincent Carey, Gregory Sharp, Shapur Naimi
1999	Misc	`conf`	HealthAware: A Consumer Health Information Destination Which Links to a Health Care Delivery Network. AMIA Sandra Kogan, Lucila Ohno-Machado, Aziz A. Boxwala, Jeanne Guillemin, Jeannie Tam, Kathleen Keefe, Thomas DiCesare, Jonathan L. Schaffer, Robert A. Greenes
1999	Misc	`conf`	Self-Organizing Maps for Visualization of Medical Data Sets. AMIA Stephan Dreiseitl, Lucila Ohno-Machado
1999	Misc	`conf`	The C-Index as a Selection Tool in Decision Tree Construction: An Example in Myocardial Infarction. AMIA Gregory Sharp, Lucila Ohno-Machado, Hamish Fraser
1999	J	`jnl`	Using Boolean reasoning to anonymize databases. Artif. Intell. Medicine Aleksander Øhrn, Lucila Ohno-Machado
1998	Misc	`conf`	Building manageable rough set classifiers. AMIA Aleksander Øhrn, Lucila Ohno-Machado, Todd Rowland
1998	Misc	`conf`	Comparison of multiple prediction models for ambulation following spinal cord injury. AMIA Todd Rowland, Lucila Ohno-Machado, Aleksander Øhrn
1998	—	`conf`	Diagnosing Breast Cancer from FNAs: Variable Relevance in Neural Network and Logistic Regression Models. MedInfo Lucila Ohno-Machado, Donald Bialek
1998	Misc	`conf`	Improving machine learning performance by removing redundant cases in medical data sets. AMIA Lucila Ohno-Machado, Hamish S. F. Fraser, Aleksander Øhrn
1998	Misc	`conf`	Linking Health Education and Health Care Service Information via the WWW: The HealthAware Project. AMIA Lucila Ohno-Machado, Aziz A. Boxwala, Jeanne Guillemin, Kathy Keefe, Gregory Sharp, Todd Rowland, John P. Ehresman, Jeannie Tam, Luke Sato, Robert A. Greenes
1998	J	`jnl`	Research Paper: The GuideLine Interchange Format: A Model for Representing Guidelines. J. Am. Medical Informatics Assoc. Lucila Ohno-Machado, John H. Gennari, Shawn N. Murphy, Nilesh L. Jain, Samson W. Tu, Diane E. Oliver, Edward Pattison-Gordon, Robert A. Greenes, Edward H. Shortliffe, G. Octo Barnett
1997	J	`jnl`	A comparison of Cox proportional hazards and artificial neural network models for medical prognosis. Comput. Biol. Medicine Lucila Ohno-Machado
1997	Misc	`conf`	A virtual repository approach to clinical and utilization studies: application in mammography as alternative to a national database. AMIA Lucila Ohno-Machado, Aziz A. Boxwala, John P. Ehresman, Darrell N. Smith, Robert A. Greenes
1997	J	`jnl`	Modular Neural Networks for Medical Prognosis: Quantifying the Benefits of Combining Neural Networks for Survival Prediction. Connect. Sci. Lucila Ohno-Machado, Mark A. Musen
1997	J	`jnl`	Sequential versus standard neural networks for pattern recognition: An example using the domain of coronary heart disease. Comput. Biol. Medicine Lucila Ohno-Machado, Mark A. Musen
1995	—	`conf`	Learning Rare Categories in Backpropagation. SBIA Lucila Ohno-Machado, Mark A. Musen