Luca Pinello

24 papers A 1Journal 15Unranked 8
YearRankTypeTitle / Venue / Authors
2025 A conf
Cross-modality Matching and Prediction of Perturbation Responses with Labeled Gromov-Wasserstein Optimal Transport.
AISTATS
Jayoung Ryu, Charlotte Bunne, Luca Pinello, Aviv Regev, Romain Lopez
2023 J jnl
A survey on algorithms to characterize transcription factor binding sites.
Briefings Bioinform.
Manuel Tognon, Rosalba Giugno, Luca Pinello
2021 J jnl
GRAFIMO: Variant and haplotype aware motif scanning on pangenome graphs.
PLoS Comput. Biol.
Manuel Tognon, Vincenzo Bonnici, Erik Garrison, Rosalba Giugno, Luca Pinello
2021 J jnl
Motif-Raptor: a cell type-specific and transcription factor centric approach for post-GWAS prioritization of causal regulators.
Bioinform.
Qiuming Yao, Paolo Ferragina, Yakir Reshef, Guillaume Lettre, Daniel E. Bauer, Luca Pinello
2020 J jnl
CRISPRitz: rapid, high-throughput and variant-aware in silico off-target site identification for CRISPR genome editing.
Bioinform.
Samuele Cancellieri, Matthew C. Canver, Nicola Bombieri, Rosalba Giugno, Luca Pinello
2020 J jnl
Robust and Scalable Learning of Complex Intrinsic Dataset Geometry via ElPiGraph.
Entropy
Luca Albergante, Evgeny M. Mirkes, Jonathan Bac, Huidong Chen, Alexis Martin, Louis Faure, Emmanuel Barillot, Luca Pinello, Alexander N. Gorban, Andrei Yu. Zinovyev
2019 J jnl
12 Grand Challenges in Single-Cell Data Science.
PeerJ Prepr.
David Laehnemann, Johannes Köster, Ewa Szczurek, Davis J. McCarthy, Stephanie C. Hicks, Mark D. Robinson, Catalina A. Vallejos, Niko Beerenwinkel, Kieran R. Campbell, Ahmed Mahfouz, Luca Pinello, Pavel Skums, Alexandros Stamatakis, Camille Stephan-Otto Attolini, Samuel Aparicio, Jasmijn A. Baaijens, Marleen Balvert, Buys de Barbanson, Antonio Cappuccio, Giacomo Corleone, Bas E. Dutilh, Maria Florescu, Victor Guryev, Rens Holmer, Katharina Jahn, Thamar Jessurun Lobo, Emma M. Keizer, Indu Khatri, Szymon M. Kielbasa, Jan O. Korbel, Alexey M. Kozlov, Tzu-Hao Kuo, Boudewijn P. F. Lelieveldt, Ion I. Mandoiu, John C. Marioni, Tobias Marschall, Felix Mölder, Amir Niknejad, Lukasz Raczkowski, Marcel J. T. Reinders, Jeroen de Ridder, Antoine-Emmanuel Saliba, Antonios Somarakis, Oliver Stegle, Fabian J. Theis, Huan Yang, Alex Zelikovsky, Alice C. McHardy, Benjamin J. Raphael, Sohrab P. Shah, Alexander Schönhuth
2019 J jnl
DrugThatGene: integrative analysis to streamline the identification of druggable genes, pathways and protein complexes from CRISPR screens.
Bioinform.
Matthew C. Canver, Daniel E. Bauer, Takahiro Maeda, Luca Pinello
2018 J jnl
AmpUMI: design and analysis of unique molecular identifiers for deep amplicon sequencing.
Bioinform.
Kendell Clement, Rick Farouni, Daniel E. Bauer, Luca Pinello
2018 J jnl
Haystack: systematic analysis of the variation of epigenetic states and cell-type specific regulatory elements.
Bioinform.
Luca Pinello, Rick Farouni, Guo-Cheng Yuan
2018 J jnl
Robust and scalable learning of data manifolds with complex topologies via ElPiGraph.
CoRR
Luca Albergante, Evgeny M. Mirkes, Huidong Chen, Alexis Martin, Louis Faure, Emmanuel Barillot, Luca Pinello, Alexander N. Gorban, Andrei Yu. Zinovyev
2014 — conf
A New Feature Selection Methodology for K-mers Representation of DNA Sequences.
CIBB
Giosuè Lo Bosco, Luca Pinello
2014 J jnl
Applications of alignment-free methods in epigenomics.
Briefings Bioinform.
Luca Pinello, Giosuè Lo Bosco, Guo-Cheng Yuan
2013 J jnl
A methodology to assess the intrinsic discriminative ability of a distance function and its interplay with clustering algorithms for microarray data analysis.
BMC Bioinform.
Raffaele Giancarlo, Giosuè Lo Bosco, Luca Pinello, Filippo Utro
2011 — conf
A New Dissimilarity Measure for Clustering Seismic Signals.
ICIAP (2)
Francesco Benvegna, Antonino D'Alessandro, Giosuè Lo Bosco, Dario Luzio, Luca Pinello, Domenico Tegolo
2011 J jnl
A motif-independent metric for DNA sequence specificity.
BMC Bioinform.
Luca Pinello, Giosuè Lo Bosco, Bret M. Hanlon, Guo-Cheng Yuan
2011 J jnl
Multi Layer Analysis
CoRR
Luca Pinello
2010 — conf
Distance Functions, Clustering Algorithms and Microarray Data Analysis.
LION
Raffaele Giancarlo, Giosuè Lo Bosco, Luca Pinello
2010 — conf
The Three Steps of Clustering in the Post-Genomic Era: A Synopsis.
CIBB
Raffaele Giancarlo, Giosuè Lo Bosco, Luca Pinello, Filippo Utro
2009 — conf
A Fuzzy One Class Classifier for Multi Layer Model.
WILF
Giosuè Lo Bosco, Luca Pinello
2009 J jnl
A one class KNN for signal identification: a biological case study.
Int. J. Knowl. Eng. Soft Data Paradigms
Vito Di Gesù, Giosuè Lo Bosco, Luca Pinello
2008 — conf
A One Class Classifier for Signal Identification: A Biological Case Study.
KES (3)
Vito Di Gesù, Giosuè Lo Bosco, Luca Pinello
2008 — conf
Interval Length Analysis in Multi Layer Model.
CIBB
Vito Di Gesù, Giosuè Lo Bosco, Luca Pinello
2007 — conf
A New Multi-Layers Method to Analyze Gene Expression.
KES (3)
Davide F. V. Corona, Vito Di Gesù, Giosuè Lo Bosco, Luca Pinello, Guo-Cheng Yuan