Luca Denti

14 papers B 1Journal 8Unranked 2
YearRankTypeTitle / Venue / Authors
2025 J jnl
Differential analysis of alternative splicing events in gene regions using residual neural networks.
Neural Comput. Appl.
Simone Ciccolella, Luca Denti, Jorge Avila Cartes, Gianluca Della Vedova, Yuri Pirola, Raffaella Rizzi, Paola Bonizzoni
2025 B conf
Pangenome Graph Indexing via the Multidollar-BWT.
SEA
Davide Cozzi, Brian Riccardi, Luca Denti, Simone Ciccolella, Kunihiko Sadakane, Paola Bonizzoni
2024 J jnl
Differential quantification of alternative splicing events on spliced pangenome graphs.
PLoS Comput. Biol.
Simone Ciccolella, Davide Cozzi, Gianluca Della Vedova, Stephen Njuguna Kuria, Paola Bonizzoni, Luca Denti
2024 J jnl
PangeBlocks: customized construction of pangenome graphs via maximal blocks.
BMC Bioinform.
Jorge Avila Cartes, Paola Bonizzoni, Simone Ciccolella, Gianluca Della Vedova, Luca Denti
2024 J jnl
RecGraph: recombination-aware alignment of sequences to variation graphs.
Bioinform.
Jorge Avila Cartes, Paola Bonizzoni, Simone Ciccolella, Gianluca Della Vedova, Luca Denti, Xavier Didelot, Davide Cesare Monti, Yuri Pirola
2023 — conf
ESGq: Alternative Splicing Events Quantification across Conditions based on Event Splicing Graphs.
ITAT
Davide Cozzi, Paola Bonizzoni, Luca Denti
2021 J jnl
MALVIRUS: an integrated application for viral variant analysis.
BMC Bioinform.
Simone Ciccolella, Luca Denti, Paola Bonizzoni, Gianluca Della Vedova, Yuri Pirola, Marco Previtali
2021 J jnl
Shark: fishing relevant reads in an RNA-Seq sample.
Bioinform.
Luca Denti, Yuri Pirola, Marco Previtali, Tamara Ceccato, Gianluca Della Vedova, Raffaella Rizzi, Paola Bonizzoni
2021 J jnl
Triplet-based similarity score for fully multilabeled trees with poly-occurring labels.
Bioinform.
Simone Ciccolella, Giulia Bernardini, Luca Denti, Paola Bonizzoni, Marco Previtali, Gianluca Della Vedova
2020 — —
Algorithms for analyzing genetic variability from Next-Generation Sequencing data.
Luca Denti
2019 — ch.
Graph Theory and Definitions.
Encyclopedia of Bioinformatics and Computational Biology (1)
Stefano Beretta, Luca Denti, Marco Previtali
2019 — ch.
Network Properties.
Encyclopedia of Bioinformatics and Computational Biology (1)
Stefano Beretta, Luca Denti, Marco Previtali
2018 J jnl
ASGAL: aligning RNA-Seq data to a splicing graph to detect novel alternative splicing events.
BMC Bioinform.
Luca Denti, Raffaella Rizzi, Stefano Beretta, Gianluca Della Vedova, Marco Previtali, Paola Bonizzoni
2017 — conf
Mapping RNA-seq Data to a Transcript Graph via Approximate Pattern Matching to a Hypertext.
AlCoB
Stefano Beretta, Paola Bonizzoni, Luca Denti, Marco Previtali, Raffaella Rizzi